SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7317

Length: 3917 nt

UniGene Fasta

>sp_v3.0_unigene7317
TACATTGGGGACACATCCCAGCAGTTTACTTATTTGAAGTCCATTTGTCCATTTGTCGACCTATGTGAACAGGCTCGATATGAAGATCAGTCGGCCATGAATATGTGATGCAAAAGCTTTCATGGTTTCCTTATCGATGCGGTCATCTATAAATACTCTAGAATCCATGCAAAATTCTCAAAAAGTCATTGGAATTGTCTCCTAATAAGATAATACTAGGGCAAACAGTGCGATCTATTCTGTATCCGTGTTGGTCTTGATTTCAAAATTAACCTGGCCATGTTCTGCTCATAGAAATTCTTAATTCCGTCTGTGGCGTTTGAAACTCGGCTTTTCTCTGTTCTGCCTCCGGTTCCAATACCAGTGGATATCTTTAGGCCTGATTGGCAGACTCTGGAGATTTGTAGGGTTTAATTGGTAAACAGTGGATATTTGTAGGTCATATTGGCAGTGTTGAGAATTTTCTGTATGTTTATGCTTCCTATTAGTTGGAAAAAATAAATGATTGGTGTATGAGAAGATTGTTTGATTTATAGTGAAGCTCGGGCAATGGAGATAGCGAATCCTGTTGAAATCCCCTGTAAGCTTTCTAATAATATTGCCGATCTCGCCAAATCCCCTGATTTTGGCAAAGGCCAAAGACCGAAGGGAAGGGAAATGGCAGCGAATTCGAAGAAATCGAGACCTTCTGCTTTTCGTGATTTTCCTGTGGGCTGCGGAAGGAATGCACCTGCGATGACCAGAGAAGATTTGGCAGTCAAGCAGGCTTCTTTGGAGGATCATATAGTACCGGTGAAAGGAGATGCCGATGCGAGAAATTCAGGGGAAGGTGAGGGTTTGAAAGCGAGGAAACTGGAAGGCAAACAAGCTTTAACCTTGTTGGAAAATGGTGAAAAGTTGGAAGAGTCAGGTGATGTTATGCCTGTACAGTCTGTAGCCGAGCAGCCTGCATCCGAAACCAAAATACAGAAGAGAAAAGACGCTGAAGGTGATCAGCTGCCATCAAAATCTGAAGCAAAACAATCAACAGCAAAGGATGTAAAAGCAGATGGTGATGAGGGTGTTATGCCAGCAAATCCTGAAGCCAGGCAATTGACACCCAAGGCGAAAAGTGAGAGAAAAGAAAACGATGAAGAGGGTGTTGTGTCATCGAAGGCTGAAGCGAAACAATCTGCAGCCAAGGTGAAATTTGACACAAAAATAGATGATGTTGTCCCCTCAAAGTCTGAAGCCAAACAATCAGTACCCAAGGGGAAAATTGATAGAAAAGTAGATGGTAAAGAGGGTGCCATGCCAGCAAAACCCGAAGTCAAGCAATTGACACCCAAGGTGAAGATTGCCAGAAGATTAGACGATGATGATGGTGGTGAGTCATCAAAGCCTGAAACCAAACACTCGGCAATGAAGGCGAAAATTGACAGGAAAGGAGATAATGAAAGGGGTGTTATGGTGTCCAAGCCTGAAGTAAAACAGCCTACACCTAAGAAGATGAGACCTGACAAAGGAAATGGTGAAGAGGACAATCTACCAGCAAAGTCTGAAGCCAAACAAGCTGCATCTAAGATAAAAATTGACAAGAAACGTGATGGTGAGGGGGATGAAAGTGTTACTCCTTCAAATCGGGTAACTAAGAAAGTTGTACAGAAGAAAAATAATGTCAAGGAAGGAGAAGGTGAAGGTGAAGGTGATTCGCGGCCTTCACAAAGTCAACAGGTGAAGAAAAAGATTACGAAGAAGAATGATGCAGGGGAGCGTGTTGCACCCTCTACATCTAAATACAAAAAAACTGCACCCAAAGTAGAGAGATCTGACCAAGATACTGCAACAAAAATGCAAGCGTTGGACAGTGAGGAACCAGTTCCAATGGACTCAGAGACAACTCCCGTTAAGAAGCAGAATTATCTAGAGGATCAGGAGGAACCAGAAACAGATTTGACACCACTAGATATCACTGAACCGGGCAGCAAGAAGCGGAAGAAAGCTCCTCCGAACAAGAATAAACGTAGTGGCAAGAAAACTATGGTATTCCGTTCCAATGACGGAGACAATGTTGGTTCAGCAGTCTCTGATAGGAAGAAAGTGAAGGATGTACTTACGACATATGATGCTCTGCGTCGAAACTTCCTGGTGGAGGATGAAGCTAGCAAGGCAGGTGCAGGTAGTGGTGGTGGTGTGAAACGATCTGATTTAAAGGCAGGGACAATGATGTTAGAGAAAGGGTTGTGGCTTAATCGGGACAGAAAGATAGTAGGATCTGTTCCAGGAGTCCAATCTGGTGATCATTTTTTCTTTAGAATGGAGTTGTGTATACTTGGCTTGCATGGTCAGGTGCAGGCTGGAATAGATTATATTGGTGCAAACAACAGTGAGTGGAATGATCCAGTTGCAATCAGTATTATAGCATCTGGTGGGTATGAAGATGATGAAGATGATGGTGGAGAAACATTGGTTTACACAGGGCAGGGAGGAAATAGCAAGTTGGATAAGAAACAGAATGATGATCAGAAACTAGAAAGGGGGAATCTTGCCCTTGAGCGAAGCAAGCATCATGGAGTTGAAGTTAGAGTGATTCGAGGTATTAAGGACAATGCTAGTCCTTCTGGAAAGATTTATGTATATGATGGTCTCTACAAGGTTGAAGATTCATGGTTGGATAAAGGGAAGTCAGGATATGGTGTGTTCAAGTACAGGTTAGAGAGGTTACCGGGCCAGCCCGAGCTAGCATCTAATATACTGAAGTCTGCTGTCAAATGGAAGTCCAACCCATCTCTCAGGCATGGTCTCATTAATCCAGATATTTCGTCAAAGAGGGATAACTTACCTGTCTATCTTGTGAATGATGTTGACGATTCCGAAGGCCCAAAAAACTTTGAGTACGTTAGCAAAGTAAGCTATTCAAATTCTGTTTCCAAGCTTCTTGAGCCATCTGAAGGTTGTGATTGCAAGGGAAGCTGTGGTTTCAGTGACAAATGTTCATGTTTTCAACTGAATGGAAGAGATATGGCATATACTCAAAACGGGATTCTTGTTAAGTGGAGACCTTTAATCTATGAATGTGGTGAGCATTGCAGGTGTCATCAAACTTGCCGAAATAGAGTGTCTCAAAAAGGTCCAAAGTTCCATTTGGAAGTGTTTAGAAAAGATAATGGCGGATGGGGTGTGCGATCTTGGGACCCAATTCCAGGTGGTAGTTTTATTTGTGAATATGTTGGTGAAGTTTTGTTAGATGAGGAGATAGATCGACAGTTTGAGGAAAATCAGTACGTTCTAAATGCAAGCCGTTCCCAGGAAAATTCAACAGACTGGGGTAATATTTCTGATATCCTCCCTGAAAAGAAACAAGATGGTTCTAGTGCAGCTCCTCTTGAGTTGAAGTTTACTATAAATGCCAAGGAAATGGGGAATGTTGCTCGCTTCATCAATCACAGTTGTTCTCCTAATGCTTTCCTGCAAAGTGTCCTTTCTGACCATCAAGATTCTAGGTTTCCCCACATCATGCTTTTTTCGATAGAACATATTCCTCCGTTAACAGAATTGACAGTTGACTATGGAGTGACTGATATGCAGACCACATAGTGAGGACATTAACGAAAATAGGATTATGTGAAACTGGAAACATGCCTATTGATGTGGTTCAATATATTTTGAAGGAAATTTTATTAAAGATTATAGGAAATCATTTCAACTTCAGAGAGGCAAGTGTCTCCTGAACATCTGTTTTGATATGAGACTCTTTATTATCTTGTTGTACTTGCAACCACTGAAGCAAGTGATTAATCAAAGTGGTTTGGGCACTGTTTTTGCTCTTGCAAGAAGTCGTTAGTTTAGATAGCTCCAATTTCTGATGTGTTGATGTATTTTTTCTTTGAATGCTGTCATGGCCTAATTGGTAAAGATTATATTGTTTTTATCAACTA

Ace file of the UniGene sp_v3.0_unigene7317

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone-lysine n-methyltransferase, suvh, putative n=1 Tax=Ricinus communis RepID=B9SHW2_RICCO	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Sma3	SET domain protein	-	-	7.183e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	3.147e-19	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		3.147e-19	%

Source	Gene names
Sma3	AT4G13460; At1g73100; At2g33290; At4g13460; At5g04940; F3N23.30; F4P9.6; GSVIVT00006194001; GSVIVT00013493001; GSVIVT00014209001; GSVIVT00020373001; GSVIVT00023351001; GSVIVT00033960001; GSVIVT00037955001; GSVIVT00037956001; LOC_Os11g03700; LOC_Os11g38900

Source	GOs	Term	Type	Identity
Sma3	chromosome, centromeric region	GO:0000775	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nuclear heterochromatin	GO:0005720	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-
Sma3	histone methylation	GO:0016571	Biological Process	-
Sma3	regulation of gene expression, epigenetic	GO:0040029	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Pre-SET zinc-binding sub-group	IPR003606	-	-
Sma3	Post-SET domain	IPR003616	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G13460.1	SDG22, SUVH9, SET22 SU(VAR)3-9 homolog 9 chr4:7824653-7826605 REVERSE LENGTH=650	45%
RefSeq	Arabidopsis thaliana	NP_193082.1	putative histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002315593.1	SET domain-containing protein, partial [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA49

Fln msg: your sequence is longer than subject: 1009 - 332

Fln protein: MEIANPVEIPCKLSNNIADLAKSPDFGKGQRPKGREMAANSKKSRPSAFRDFPVGCGRNAPAMTREDLAVKQASLEDHIVPVKGDADARNSGEGEGLKARKLEGKQALTLLENGEKLEESGDVMPVQSVAEQPASETKIQKRKDAEGDQLPSKSEAKQSTAKDVKADGDEGVMPANPEARQLTPKAKSERKENDEEGVVSSKAEAKQSAAKVKFDTKIDDVVPSKSEAKQSVPKGKIDRKVDGKEGAMPAKPEVKQLTPKVKIARRLDDDDGGESSKPETKHSAMKAKIDRKGDNERGVMVSKPEVKQPTPKKMRPDKGNGEEDNLPAKSEAKQAASKIKIDKKRDGEGDESVTPSNRVTKKVVQKKNNVKEGEGEGEGDSRPSQSQQVKKKITKKNDAGERVAPSTSKYKKTAPKVERSDQDTATKMQALDSEEPVPMDSETTPVKKQNYLEDQEEPETDLTPLDITEPGSKKRKKAPPNKNKRSGKKTMVFRSNDGDNVGSAVSDRKKVKDVLTTYDALRRNFLVEDEASKAGAGSGGGVKRSDLKAGTMMLEKGLWLNRDRKIVGSVPGVQSGDHFFFRMELCILGLHGQVQAGIDYIGANNSEWNDPVAISIIASGGYEDDEDDGGETLVYTGQGGNSKLDKKQNDDQKLERGNLALERSKHHGVEVRVIRGIKDNASPSGKIYVYDGLYKVEDSWLDKGKSGYGVFKYRLERLPGQPELASNILKSAVKWKSNPSLRHGLINPDISSKRDNLPVYLVNDVDDSEGPKNFEYVSKVSYSNSVSKLLEPSEGCDCKGSCGFSDKCSCFQLNGRDMAYTQNGILVKWRPLIYECGEHCRCHQTCRNRVSQKGPKFHLEVFRKDNGGWGVRSWDPIPGGSFICEYVGEVLLDEEIDRQFEENQYVLNASRSQENSTDWGNISDILPEKKQDGSSAAPLELKFTINAKEMGNVARFINHSCSPNAFLQSVLSDHQDSRFPHIMLFSIEHIPPLTELTVDYGVTDMQTT*

Protein Length: 1010

Fln nts: TACATTGGGGACACATCCCAGCAGTTTACTTATTTGAAGTCCATTTGTCCATTTGTCGACCTATGTGAACAGGCTCGATATGAAGATCAGTCGGCCATGAATATGTGATGCAAAAGCTTTCATGGTTTCCTTATCGATGCGGTCATCTATAAATACTCTAGAATCCATGCAAAATTCTCAAAAAGTCATTGGAATTGTCTCCTAATAAGATAATACTAGGGCAAACAGTGCGATCTATTCTGTATCCGTGTTGGTCTTGATTTCAAAATTAACCTGGCCATGTTCTGCTCATAGAAATTCTTAATTCCGTCTGTGGCGTTTGAAACTCGGCTTTTCTCTGTTCTGCCTCCGGTTCCAATACCAGTGGATATCTTTAGGCCTGATTGGCAGACTCTGGAGATTTGTAGGGTTTAATTGGTAAACAGTGGATATTTGTAGGTCATATTGGCAGTGTTGAGAATTTTCTGTATGTTTATGCTTCCTATTAGTTGGAAAAAATAAATGATTGGTGTATGAGAAGATTGTTTGATTTATAGTGAAGCTCGGGCA_-_ATGGAGATAGCGAATCCTGTTGAAATCCCCTGTAAGCTTTCTAATAATATTGCCGATCTCGCCAAATCCCCTGATTTTGGCAAAGGCCAAAGACCGAAGGGAAGGGAAATGGCAGCGAATTCGAAGAAATCGAGACCTTCTGCTTTTCGTGATTTTCCTGTGGGCTGCGGAAGGAATGCACCTGCGATGACCAGAGAAGATTTGGCAGTCAAGCAGGCTTCTTTGGAGGATCATATAGTACCGGTGAAAGGAGATGCCGATGCGAGAAATTCAGGGGAAGGTGAGGGTTTGAAAGCGAGGAAACTGGAAGGCAAACAAGCTTTAACCTTGTTGGAAAATGGTGAAAAGTTGGAAGAGTCAGGTGATGTTATGCCTGTACAGTCTGTAGCCGAGCAGCCTGCATCCGAAACCAAAATACAGAAGAGAAAAGACGCTGAAGGTGATCAGCTGCCATCAAAATCTGAAGCAAAACAATCAACAGCAAAGGATGTAAAAGCAGATGGTGATGAGGGTGTTATGCCAGCAAATCCTGAAGCCAGGCAATTGACACCCAAGGCGAAAAGTGAGAGAAAAGAAAACGATGAAGAGGGTGTTGTGTCATCGAAGGCTGAAGCGAAACAATCTGCAGCCAAGGTGAAATTTGACACAAAAATAGATGATGTTGTCCCCTCAAAGTCTGAAGCCAAACAATCAGTACCCAAGGGGAAAATTGATAGAAAAGTAGATGGTAAAGAGGGTGCCATGCCAGCAAAACCCGAAGTCAAGCAATTGACACCCAAGGTGAAGATTGCCAGAAGATTAGACGATGATGATGGTGGTGAGTCATCAAAGCCTGAAACCAAACACTCGGCAATGAAGGCGAAAATTGACAGGAAAGGAGATAATGAAAGGGGTGTTATGGTGTCCAAGCCTGAAGTAAAACAGCCTACACCTAAGAAGATGAGACCTGACAAAGGAAATGGTGAAGAGGACAATCTACCAGCAAAGTCTGAAGCCAAACAAGCTGCATCTAAGATAAAAATTGACAAGAAACGTGATGGTGAGGGGGATGAAAGTGTTACTCCTTCAAATCGGGTAACTAAGAAAGTTGTACAGAAGAAAAATAATGTCAAGGAAGGAGAAGGTGAAGGTGAAGGTGATTCGCGGCCTTCACAAAGTCAACAGGTGAAGAAAAAGATTACGAAGAAGAATGATGCAGGGGAGCGTGTTGCACCCTCTACATCTAAATACAAAAAAACTGCACCCAAAGTAGAGAGATCTGACCAAGATACTGCAACAAAAATGCAAGCGTTGGACAGTGAGGAACCAGTTCCAATGGACTCAGAGACAACTCCCGTTAAGAAGCAGAATTATCTAGAGGATCAGGAGGAACCAGAAACAGATTTGACACCACTAGATATCACTGAACCGGGCAGCAAGAAGCGGAAGAAAGCTCCTCCGAACAAGAATAAACGTAGTGGCAAGAAAACTATGGTATTCCGTTCCAATGACGGAGACAATGTTGGTTCAGCAGTCTCTGATAGGAAGAAAGTGAAGGATGTACTTACGACATATGATGCTCTGCGTCGAAACTTCCTGGTGGAGGATGAAGCTAGCAAGGCAGGTGCAGGTAGTGGTGGTGGTGTGAAACGATCTGATTTAAAGGCAGGGACAATGATGTTAGAGAAAGGGTTGTGGCTTAATCGGGACAGAAAGATAGTAGGATCTGTTCCAGGAGTCCAATCTGGTGATCATTTTTTCTTTAGAATGGAGTTGTGTATACTTGGCTTGCATGGTCAGGTGCAGGCTGGAATAGATTATATTGGTGCAAACAACAGTGAGTGGAATGATCCAGTTGCAATCAGTATTATAGCATCTGGTGGGTATGAAGATGATGAAGATGATGGTGGAGAAACATTGGTTTACACAGGGCAGGGAGGAAATAGCAAGTTGGATAAGAAACAGAATGATGATCAGAAACTAGAAAGGGGGAATCTTGCCCTTGAGCGAAGCAAGCATCATGGAGTTGAAGTTAGAGTGATTCGAGGTATTAAGGACAATGCTAGTCCTTCTGGAAAGATTTATGTATATGATGGTCTCTACAAGGTTGAAGATTCATGGTTGGATAAAGGGAAGTCAGGATATGGTGTGTTCAAGTACAGGTTAGAGAGGTTACCGGGCCAGCCCGAGCTAGCATCTAATATACTGAAGTCTGCTGTCAAATGGAAGTCCAACCCATCTCTCAGGCATGGTCTCATTAATCCAGATATTTCGTCAAAGAGGGATAACTTACCTGTCTATCTTGTGAATGATGTTGACGATTCCGAAGGCCCAAAAAACTTTGAGTACGTTAGCAAAGTAAGCTATTCAAATTCTGTTTCCAAGCTTCTTGAGCCATCTGAAGGTTGTGATTGCAAGGGAAGCTGTGGTTTCAGTGACAAATGTTCATGTTTTCAACTGAATGGAAGAGATATGGCATATACTCAAAACGGGATTCTTGTTAAGTGGAGACCTTTAATCTATGAATGTGGTGAGCATTGCAGGTGTCATCAAACTTGCCGAAATAGAGTGTCTCAAAAAGGTCCAAAGTTCCATTTGGAAGTGTTTAGAAAAGATAATGGCGGATGGGGTGTGCGATCTTGGGACCCAATTCCAGGTGGTAGTTTTATTTGTGAATATGTTGGTGAAGTTTTGTTAGATGAGGAGATAGATCGACAGTTTGAGGAAAATCAGTACGTTCTAAATGCAAGCCGTTCCCAGGAAAATTCAACAGACTGGGGTAATATTTCTGATATCCTCCCTGAAAAGAAACAAGATGGTTCTAGTGCAGCTCCTCTTGAGTTGAAGTTTACTATAAATGCCAAGGAAATGGGGAATGTTGCTCGCTTCATCAATCACAGTTGTTCTCCTAATGCTTTCCTGCAAAGTGTCCTTTCTGACCATCAAGATTCTAGGTTTCCCCACATCATGCTTTTTTCGATAGAACATATTCCTCCGTTAACAGAATTGACAGTTGACTATGGAGTGACTGATATGCAGACCACATAG___TGAGGACATTAACGAAAATAGGATTATGTGAAACTGGAAACATGCCTATTGATGTGGTTCAATATATTTTGAAGGAAATTTTATTAAAGATTATAGGAAATCATTTCAACTTCAGAGAGGCAAGTGTCTCCTGAACATCTGTTTTGATATGAGACTCTTTATTATCTTGTTGTACTTGCAACCACTGAAGCAAGTGATTAATCAAAGTGGTTTGGGCACTGTTTTTGCTCTTGCAAGAAGTCGTTAGTTTAGATAGCTCCAATTTCTGATGTGTTGATGTATTTTTTCTTTGAATGCTGTCATGGCCTAATTGGTAAAGATTATATTGTTTTTATCAACTA

Fln Alignment:

Contig7317___EGCDCKGSCGFSDKCSCFQLNGRDMAYTQNGILVKWR------PLIYECGEHCRCHQTCRNRVSQKGPKFHLEVFRKDNGGWGVRSWDPIPGGSFICEYVGEVLLDEEI-DRQFEENQYVLNASRS
D5AA49______________EGCPC-------NKFRVYTEDGR-ISFTDGNCDTQFEGLNGGPPLVMECGPACRCGSSCRNRVSQRGLAVRVAVVRHPRKGWSLHSLEPITRGAFVCEYAGELLTTVEARERQRHYDDAIVNKHNS

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
294	33		66		0.997452
316	33		66		0.997452
389	50		50		1.0
904	14		85		0.993533
978	83		16		0.994512
979		16	83		0.994512
981		83		16	0.994512
983		83	16		0.994512
1004		83		16	0.994512
1466	33			66	0.997452
1467	66	33			0.997452
1469	66			33	0.997452
1470	66			33	0.997452
1572			33	66	0.997452
1574	66		33		0.997452
1720	80		20		0.995493
1781	75			25	0.996473
1782	75			25	0.996473
2291		85		14	0.993533
2292		14		85	0.993533
2418	10		90		0.90298
2419	90	10			0.90298
2421			90	10	0.90298
2422	90			10	0.90298
2436	11		88		0.923564
2437		11	88		0.923564
2439			88	11	0.923564
2459	85		14		0.993533
2583	83		16		0.994512
3431			12	87	0.992554
3858	10			90	0.90298
3859	88			11	0.923564
3860	12			87	0.992554

SSRs (tot: 2)

Start position	End position	Sequence	Length
1669	1688	GAAGGT GAAGGT GAAGGT GA	20
2162	2173	GTG GTG GTG GTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain