SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7310

Length: 3009 nt

UniGene Fasta

>sp_v3.0_unigene7310
ATGGGGGCTTTTCCCTGTCGATCACCTTTAACTTTCTAAGCCCTCTTTCTTCGTGAATCTTCTCCATTCTGGTGCGTGTCCTTCACGGGTAGCGGCGCAGTGCCGCTATCGCATAATCAATTATATACCACTGAATACAAAATATTTATTCAAAAATCCCAAACGAAAGTCCCACTCTCCCACCAAGTCCTTCTCAAAATAGAACAAAACAGAGGTACATTGTGTACCTCCCTCTGAAAATATTTCATGCTGTTTAGCGGATGAATTCTGAACTGCAACATCGACATTCTAGTTTCAAGGTTTCTTCTGGTGATATTCAGTCACCATAACTGCAGCAGGAGTATTGAACAAAGGCTATAAAGAATATATGTAGCAGTGAAATTTTAGATCAGGATGCTTAAAGAAAGCTTATTTTGATTTGCTGCTTGAGGTTGGAATCTTTGAAATGGTAGTTCTGTTAATGGTTGGAGAGTTGCTTATGGAGTTTGTACAATAGTAGCTAGGAGCCTTCAGCTTTGAGACAGACATCCTGGAGAAATGTCCAACATGCATGGGGCTACGACATCAGATGTTGAACGTGCAGAGGAAATAAAGGCTATTGCTAATGCAGCATTTCAAGCTCACAAATTTTCCCGAGCCATAGAGCTCTATTCTGAAGCCATTGAGTTGAACAGTCAGAATGCAGTTTATTGGGCAAATCGTGCATTTGCACATACAAAGTTGGAGGAGTATGGAAGTGCTATTCAGGATGCAACAAAAGCTGTTGAAATTGATCCTAAATATACGAAGGGGTACTACCGGAGAGGTGCTGCATATCTAGCCATGGGCAAATTCAAGGAAGCACTAAAAGATTTTCAGCAGGTTAAGAGAATTTGTCCAAATGATCCTGATGCGACCAAGAAGCTTAAAGAAGCCGAGAAAGCAGTCCAAAAACTTAGATTTATTGAGGCCATCTCAGTGAATGATCTTGAGAATCATTCTGTTGTTGAGTCCATCGATTTTCGTTCAATAGAGGTAGAGCCACAGTATGCTGGTGCTAGAATAGAAGGAGAAAATGTAACATTGGAATTTATAAAGCAAATGATGGATGAGTTCAAGAATCAGAAAAATATACACAGAAGGTATGCATTTCAAATATTATTGCAAGTAAAGGATTTGCTGGAGGTGATGCCATCACTGGTTGACATTAATATTCCAAACGGAAAGCAATTCACTGTTTGTGGTGACATCCATGGTCAGTATTATGACCTTTTGAACATCTTTGAGATTAATGGGCTTCCTTCAGAGGACAATCCTTATCTTTTTAATGGTGATTTTGTTGATCGAGGATCATTTTCAGTTGAAGTCATACTTGTGCTATTCGCATTCAAGTGTATGTGTCCAACTGGACTCTATCTTGCAAGAGGAAATCATGAAAGCAGGAGTATGAACAAGATTTATGGTTTTGAGGGTGAAGTCAAATCCAAGTACAGTGAAAGCATGGTTGAGCTTTTCGCTGAAGTGTTTTGCTGCTTGCCTTTGGCTCATGTCCTCAATGACAAGATTTTTGTTGTCCATGGTGGTCTTTTTAGTGTTGATGGTATAAAACTTGATGATATCAAAGCAATTGATCGATTCCGAGAGCCACCTGAAGAGGGTCTGATGTGTGAAATACTTTGGAGTGATCCACAGCCTCGTAAAGGGCGTGGGCCCAGCAAACGAGGTGTTGGTTTGTCTTTTGGAGAAGATGTGACCAAAAGGTTTCTCCAAGAAAACAATCTTGAGCTGGTGGTCAGGTCTCATGAAGTTAAAGAGGAAGGTTATGAAATTGAACATGATGGCAAACTTATTACGGTTTTCTCAGCTCCAAACTACTGTGACCAGATGGGTAACAAGGGTGCGTTCATAAGGTTTAAGGCCCCAGAACTCAAGCCAGAAATTATCTCATTTTCTGCTGTGCCACATCCTGATGTAAGGCCCATGGCATATGCAAATAATTTCCTGAGGCTTTTCTCCTAATCACCGGAAGGTTTATTTAAGTGTTTGAACACATCGGCACCAGAAGGTTTATTCTCGAGGTTGAACACTTCCGTGTTCCTCTTTTAGATGACTGATGAATCCAAGATATTAATTTATTGTGTGTCCACTTCTTGGTAACACTAGAGATATTTCTATCACTTGATATTTAAGGATAACATTGTGCATGCTTGCTCTTGTTCAGTAAAGGTCAGGGGGTTGAATGATTTGCAGAAGTCATTTAAGAAAATCTATGCTTATTGACTGCTGTCCTGAATTCTCTGGTTGCTTATATTATTGGTGTCTGTTGCTGGAGGTTGTTAAAAGGACTCATGATCTGTTGTCATGTAATATTTTTGAATAATACGGTCATTTTTCCAGGTCCCATATTCCTAAAATTTGTTGGGATGTTCGGACCTGAGGCAGGCATGCACTCGATTGTAAATTCATTTTGGAAATGTTCATTTTTCTTCCCTTTGAGGTGTTTTCAAAATGAGATATATTTCTGCTATTTGCGGACGAGGGTCCCTGTATATGCTGTGGGAAATCTTTAGCACGTCGTGACCTTGGCTGTCACTCTGTTCCTTATTTCTGGCATATGGTGTTGTTTCTCGCATTGTACAGCACTCATCGTTTTCAATGTGGAAAATAGAGTGTCAATAGGAATGTGAAACATTACCTGTGGAATGTGAACCTGGAACTAACTGAGAGATTGTGAAATGTGGAATGTGAACATGGAACTAACTGAGACAATAAAAGGTATAGCTGTCTATGGAGAGGATGCCAAACCTATTCATAGGTGTCTAGTACGCACTGAAGTGCAGAATATAGCCATAGTAGCTATCATTACTGCAGACTACAACGTGAAATGTGGTTAGTTTGCAATAGACAGAATCCTATACATGTTCATGGATAAGGGCTTATACACTTGAGCAGAAATGTCTTTCTATGTATCAATTTTCTTAATAGATCCATCTGATAAGTATTTTCTTAGAACTAAAAAAAAAAAAAAAA

Ace file of the UniGene sp_v3.0_unigene7310

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Isoform 2 of Serine/threonine-protein phosphatase 5 n=1 Tax=Solanum lycopersicum RepID=Q84K11-2	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	PPP domain	IPR013235	-	-
Sma3	Protein phosphatase 5	IPR011236	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G42810.2	-	67%
RefSeq	Arabidopsis thaliana	NP_565985.1	serine/threonine-protein phosphatase 5 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002320408.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRV6

Fln msg:

Fln protein: MSNMHGATTSDVERAEEIKAIANAAFQAHKFSRAIELYSEAIELNSQNAVYWANRAFAHTKLEEYGSAIQDATKAVEIDPKYTKGYYRRGAAYLAMGKFKEALKDFQQVKRICPNDPDATKKLKEAEKAVQKLRFIEAISVNDLENHSVVESIDFRSIEVEPQYAGARIEGENVTLEFIKQMMDEFKNQKNIHRRYAFQILLQVKDLLEVMPSLVDINIPNGKQFTVCGDIHGQYYDLLNIFEINGLPSEDNPYLFNGDFVDRGSFSVEVILVLFAFKCMCPTGLYLARGNHESRSMNKIYGFEGEVKSKYSESMVELFAEVFCCLPLAHVLNDKIFVVHGGLFSVDGIKLDDIKAIDRFREPPEEGLMCEILWSDPQPRKGRGPSKRGVGLSFGEDVTKRFLQENNLELVVRSHEVKEEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFKAPELKPEIISFSAVPHPDVRPMAYANNFLRLFS*

Protein Length: 488

Fln nts: ATGGGGGCTTTTCCCTGTCGATCACCTTTAACTTTCTAAGCCCTCTTTCTTCGTGAATCTTCTCCATTCTGGTGCGTGTCCTTCACGGGTAGCGGCGCAGTGCCGCTATCGCATAATCAATTATATACCACTGAATACAAAATATTTATTCAAAAATCCCAAACGAAAGTCCCACTCTCCCACCAAGTCCTTCTCAAAATAGAACAAAACAGAGGTACATTGTGTACCTCCCTCTGAAAATATTTCATGCTGTTTAGCGGATGAATTCTGAACTGCAACATCGACATTCTAGTTTCAAGGTTTCTTCTGGTGATATTCAGTCACCATAACTGCAGCAGGAGTATTGAACAAAGGCTATAAAGAATATATGTAGCAGTGAAATTTTAGATCAGGATGCTTAAAGAAAGCTTATTTTGATTTGCTGCTTGAGGTTGGAATCTTTGAAATGGTAGTTCTGTTAATGGTTGGAGAGTTGCTTATGGAGTTTGTACAATAGTAGCTAGGAGCCTTCAGCTTTGAGACAGACATCCTGGAGAA_-_ATGTCCAACATGCATGGGGCTACGACATCAGATGTTGAACGTGCAGAGGAAATAAAGGCTATTGCTAATGCAGCATTTCAAGCTCACAAATTTTCCCGAGCCATAGAGCTCTATTCTGAAGCCATTGAGTTGAACAGTCAGAATGCAGTTTATTGGGCAAATCGTGCATTTGCACATACAAAGTTGGAGGAGTATGGAAGTGCTATTCAGGATGCAACAAAAGCTGTTGAAATTGATCCTAAATATACGAAGGGGTACTACCGGAGAGGTGCTGCATATCTAGCCATGGGCAAATTCAAGGAAGCACTAAAAGATTTTCAGCAGGTTAAGAGAATTTGTCCAAATGATCCTGATGCGACCAAGAAGCTTAAAGAAGCCGAGAAAGCAGTCCAAAAACTTAGATTTATTGAGGCCATCTCAGTGAATGATCTTGAGAATCATTCTGTTGTTGAGTCCATCGATTTTCGTTCAATAGAGGTAGAGCCACAGTATGCTGGTGCTAGAATAGAAGGAGAAAATGTAACATTGGAATTTATAAAGCAAATGATGGATGAGTTCAAGAATCAGAAAAATATACACAGAAGGTATGCATTTCAAATATTATTGCAAGTAAAGGATTTGCTGGAGGTGATGCCATCACTGGTTGACATTAATATTCCAAACGGAAAGCAATTCACTGTTTGTGGTGACATCCATGGTCAGTATTATGACCTTTTGAACATCTTTGAGATTAATGGGCTTCCTTCAGAGGACAATCCTTATCTTTTTAATGGTGATTTTGTTGATCGAGGATCATTTTCAGTTGAAGTCATACTTGTGCTATTCGCATTCAAGTGTATGTGTCCAACTGGACTCTATCTTGCAAGAGGAAATCATGAAAGCAGGAGTATGAACAAGATTTATGGTTTTGAGGGTGAAGTCAAATCCAAGTACAGTGAAAGCATGGTTGAGCTTTTCGCTGAAGTGTTTTGCTGCTTGCCTTTGGCTCATGTCCTCAATGACAAGATTTTTGTTGTCCATGGTGGTCTTTTTAGTGTTGATGGTATAAAACTTGATGATATCAAAGCAATTGATCGATTCCGAGAGCCACCTGAAGAGGGTCTGATGTGTGAAATACTTTGGAGTGATCCACAGCCTCGTAAAGGGCGTGGGCCCAGCAAACGAGGTGTTGGTTTGTCTTTTGGAGAAGATGTGACCAAAAGGTTTCTCCAAGAAAACAATCTTGAGCTGGTGGTCAGGTCTCATGAAGTTAAAGAGGAAGGTTATGAAATTGAACATGATGGCAAACTTATTACGGTTTTCTCAGCTCCAAACTACTGTGACCAGATGGGTAACAAGGGTGCGTTCATAAGGTTTAAGGCCCCAGAACTCAAGCCAGAAATTATCTCATTTTCTGCTGTGCCACATCCTGATGTAAGGCCCATGGCATATGCAAATAATTTCCTGAGGCTTTTCTCCTAA___TCACCGGAAGGTTTATTTAAGTGTTTGAACACATCGGCACCAGAAGGTTTATTCTCGAGGTTGAACACTTCCGTGTTCCTCTTTTAGATGACTGATGAATCCAAGATATTAATTTATTGTGTGTCCACTTCTTGGTAACACTAGAGATATTTCTATCACTTGATATTTAAGGATAACATTGTGCATGCTTGCTCTTGTTCAGTAAAGGTCAGGGGGTTGAATGATTTGCAGAAGTCATTTAAGAAAATCTATGCTTATTGACTGCTGTCCTGAATTCTCTGGTTGCTTATATTATTGGTGTCTGTTGCTGGAGGTTGTTAAAAGGACTCATGATCTGTTGTCATGTAATATTTTTGAATAATACGGTCATTTTTCCAGGTCCCATATTCCTAAAATTTGTTGGGATGTTCGGACCTGAGGCAGGCATGCACTCGATTGTAAATTCATTTTGGAAATGTTCATTTTTCTTCCCTTTGAGGTGTTTTCAAAATGAGATATATTTCTGCTATTTGCGGACGAGGGTCCCTGTATATGCTGTGGGAAATCTTTAGCACGTCGTGACCTTGGCTGTCACTCTGTTCCTTATTTCTGGCATATGGTGTTGTTTCTCGCATTGTACAGCACTCATCGTTTTCAATGTGGAAAATAGAGTGTCAATAGGAATGTGAAACATTACCTGTGGAATGTGAACCTGGAACTAACTGAGAGATTGTGAAATGTGGAATGTGAACATGGAACTAACTGAGACAATAAAAGGTATAGCTGTCTATGGAGAGGATGCCAAACCTATTCATAGGTGTCTAGTACGCACTGAAGTGCAGAATATAGCCATAGTAGCTATCATTACTGCAGACTACAACGTGAAATGTGGTTAGTTTGCAATAGACAGAATCCTATACATGTTCATGGATAAGGGCTTATACACTTGAGCAGAAATGTCTTTCTATGTATCAATTTTCTTAATAGATCCATCTGATAAGTATTTTCTTAGAACTAAAAAAAAAAAAAAAA

Fln Alignment:

Contig7310___MSNMHGATTSDVERAEEIKAIANAAFQAHKFSRAIELYSEAIELNSQNAVYWANRAFAHTKLEEYGSAIQDATKAVEIDPKYTKGYYRRGAAYLAMGKFKEALKDFQQVKRICPNDPDATKKLKEAEKAVQKLRFIEAISVNDLENHSVVESIDFRSIEVEPQYAGARIEGENVTLEFIKQMMDEFKNQKNIHRRYAFQILLQVKDLLEVMPSLVDINIPNGKQFTVCGDIHGQYYDLLNIFEINGLPSEDNPYLFNGDFVDRGSFSVEVILVLFAFKCMCPTGLYLARGNHESRSMNKIYGFEGEVKSKYSESMVELFAEVFCCLPLAHVLNDKIFVVHGGLFSVDGIKLDDIKAIDRFREPPEEGLMCEILWSDPQPRKGRGPSKRGVGLSFGEDVTKRFLQENNLELVVRSHEVKEEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFKAPELKPEIISFSAVPHPDVRPMAYANNFLRLFS
B8LRV6______________MSNMHGAMTSDIERAEEIKAIANAAFQAHKFSRAIELYSQAIELNSQNAVYWANRAFAHTKLEEYGSAIQDATTAVEIDAKYTKGYYRRGAAYLAMGKFKEALKDFQQVKKICPNDPDATKKLKECEKAVQKLRFIEAISVNDLENHSVVDSIDFRSIEVEPQYAGARIEGENVTLEFIKKMMDDFKNQKNIHKRYAFQILLQVRDLLEVMPSLIDISVPNGKQFTVCGDIHGQYYDLLNIFEINGLPSEDNPYLFNGDFVDRGSFSVEVILVLFAFKCMCPTGLYLSRGNHESRSMNKIYGFEGEVKSKYNESMVELFAEVFCCLPLAHVLNDKIFVVHGGLFSVDGVKLDDIRAINRFREPPEEGLMCEILWSDPQPRKGRGPSKRGVGLSFGEDVTKRFLQENNLELVVRSHEVKEEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFKAPELKPEIISFSAVPHPDVRPMAYANNFLRLFS

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
266	75		25		0.996473
467		20		80	0.995493
482	16			83	0.994512
483			83	16	0.994512
485	83			16	0.994512
905		14	85		0.993533
906	14	85			0.993533
982	10	90			0.90298
983		10		90	0.90298
984	10		90		0.90298
1070	90	10			0.90298
1079			88	11	0.923564
1081	88	11			0.923564
1086	88			11	0.923564
1132	10			90	0.90298
1133	10			90	0.90298
1136	90			10	0.90298
1137	90	10			0.90298
1506	10		90		0.90298
1525	11		88		0.923564
1528		88		11	0.923564
1550	28			71	1.0
1551		28		71	1.0
1552	28		71		1.0
1605	25		75		0.996473
1837	20		80		0.995493
1838		20		80	0.995493
2006	10	90			0.90298
2007			90	10	0.90298
2009	90		10		0.90298
2010	90		10		0.90298
2515	33		66		0.997452
2555		57	42		1.0
2558	28	57		14	1.0
2561			57	42	1.0
2562	57		42		1.0
2563		57	42		1.0
2564		57	42		1.0
2566			42	57	1.0
2570			42	57	1.0
2572			42	57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain