SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7307

Length: 2761 nt

UniGene Fasta

>sp_v3.0_unigene7307
CGTCGTGACCTTGGCTGTCACTCAGTGTCTTTGTGAGTTGTGCTTTCTGGCGATGGCTTCCGCATGAAATATACTATCAAAATTTCCCATTTTTCTGCCCAATTTTCAGCAATTAAGTACCGATTTAAGTCCCCTCAGCTTCACACACGCAGTCCGAGCTTTAAATCGGCGTGATATTCATCTAACTCGGTGCAAAATTCCTCTCTCTGCAACCCCGAGTCGTTTCGCTCGTTGAAAATCCAGACACCCTCAATTGTTTTCACAAAATCGCAGTTTTACTAATGTGCAGAGGGTTCGATCATCGGACCTAATGGTTTGGGTTCCAAAAGAAGCCCTTGAAGCAGCTATCGCTGACAGCCATTGAGATTGGTTTGATCAGTCTTCAAAAAATTTCTGCAGTTCAATTATCACCTACCAGGCTTCTGCTATTGCTGCTTGAAGTTGGCATGGACACCACAACAAGCAGTGGCCTATGGCAGTCTACATCAATACAGTATCATTCAGTCAATGAAAATCCTCTGTCAAGTGAACCTCATTTGCAAATTATCCACCAACAGCAACGGCATTGCTATGGAAGTACAAGTCAGGGCGAATTTCCACTAGCGGCCAGTCCCTCCATTGTTCTACATGTGCTTACTGAATGTAATCTGGATCCACAAGACCTTGCCAGTCTGGAGGCTTCATCTCGGTTCTTTAGACAACCAGCAAACTTTTCCCCCGACTTTAATCTATCTATATCTGAACTTGCAGCATTGGACATGTGCCAAAGCAGAGCTGTATTCAAGCCCATGACACAATCAGAGAGAGAAACTATGAAAGAAAGATGCGGAGGTTCTTGGAAGTTGGTATTGCGGTTCTTGATAGCCGGGGAAACATGCTACAGGCGTGAAAAGTGTCAGGCCATAGCTGGTCCTGGTCATAGTGTAGTGGTAACCAAATCTGGTGCAGTTTATACATTCGGCTCTAACAACTCTGGACAGCTTGGCCATGGGACAACAGAAGAAGAATGGCGTCCAAGACTGATCAGGTCTCTTCAGGGGATTCGTATTATCCAGGCAACCGCAGGAGCAGGGCGTACAATGCTTATTAGTGATATAGGACAAGTTTATGCGTTTGGGAAAGACTCTTTTGGTGACTCAGAGTATGTGGTTGATGGCTCTAGGACTGCCACTACTCCCCAGCTGGTGGAGTCTTTGAAAGGAATTTTCGCAGTTCAAGCAGTTATTGGTAATTTTTTCACTGCTGTTCTTTCACGAGAGGGTAGAGTTTACACATTCTCTTGGGGTTCAGAGGCAACTCTTGGTCATCAAACTGAGCCGCATGATCAGGAACCACATTTGCTGAAAGGTGATCTGGAGAATGTTCCTGTGGTACAAATTGCAGCAGGCTATTGTTATTTGTTAGCTCTCACCTGTCAGCCCAGTGGCATGTCAGTATATTCTGTTGGTTGCGGCTTAGGAGGCAAGCTCGGACATGGTTCTAGAACAGATGAAAAGTATCCCCGGAAGATTGAACAATTTAAACATTTGAAGTTAGAGCCAGTTGTGATAGCGGCTGGGGCATGGCATGCTGCTGTTGTGGGCAAAGATGGACGAGTATGTACATGGGGATGGGGTCGATATGGTTGTCTAGGTCATGGAAATGAAGAATGTGAAACTGTTCCTAAGGTTGTGGAATCACTTCTACGAGTGAAGGCAGTTCACGTGACTACAGGTGATTATACCACATTTGTTGTGGCTGAAAATGGGGATGTCTATTCTTTTGGGTGTGGAGAGTCATCAAGCCTTGGGCACCACATGGGCACGGCAACTGAAGGCCAGGCTCAGAGACATGCAAATCTGCTAAGGCCAGAACTAGTGGTTTCATTGAAGCAGAGGCGGGAACGGGTTGTCCAGATCAGTCTGACAAACTCAATATTCTGGAATGCTCACACATTTGCCTTGACAGAGTCGGCAAAACTTTACGCATTCGGAGCTGGAGACAAAGGGCAGCTTGGGACAGAGCTCCTTGCCTATCAAAGCGAGAGGGGAAATCCAGAACTTGTTGATATTGATTTAAATTAAAGAATATTGTCTTATTTTGCTTGTCTGTCCAAATTCAGTTGAAGCCTATTGTTGCCTCCAATTCTCATCTAACATGTATAGTCTTTCATCCCTTGTTTCTGTCTTTCCAAGTAGATAATACTAGTTGGAACTGGTCGAGAGAATTGTCAACTTTCCTTTTGAAACTGGTCTGGTATTCCTTGAACAGGTTTTCTATCATCAGGGAATGGGAGTACACTACCTGGCACAAGGCAATTCATCACATTTTTTCCAAGCAAGGACTACAAAATTGGGTAACTGTTTGATCTGGAAAATTGTAACCCAGATTTTGCAGTTTGGTAACTTGACATACTGATGAAAAGGTGGAAAGGTCTGCTTACTCCCATAGATATTTTTCATAATGGTAGGCAGAATGCAAATTCCATGATTTGGTATTCTTTTATTCATAGCTGGATTGTGCCCCTCAACTCGTTCAAAATTATGGTAACTTACAAAAATAGAGCCCTTATCTGTCTTTGCCTATAGGATTCCCTTGTGGTAAAATGTATTTATTATAAAAGAAGACTATTCTAACGGGCTTATGTAAACCCTAACATGTGATCTCCCGACTATAAGAGCACGTGTAAATACTTACATTCAATAAAGGAAAATGCTAGGTTAAAAAGGAGATTACGATACTGTACATGCTGTACACTATTTTATCAGATATATATATAAGA

Ace file of the UniGene sp_v3.0_unigene7307

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins	-	-	5.0e-13	23%
FL-Next	tr=Os12g0284000 protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	76%

Source	Gene names
Sma3	At3g26100; GSVIVT00030704001; LOC_Os12g18650; OJ1568_B05.16; Os02g0597000; Os12g0284000; OsI_07916; OsI_38005; OsJ_07379; OsJ_35777; POPTRDRAFT_1100674; POPTRDRAFT_569586; RCOM_1083010; VITISV_008041;

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G26100.2	-	71%
RefSeq	Arabidopsis thaliana	NP_974362.1	regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002321983.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: Q2QTS8

Fln msg:

Fln protein: MDTTTSSGLWQSTSIQYHSVNENPLSSEPHLQIIHQQQRHCYGSTSQGEFPLAASPSIVLHVLTECNLDPQDLASLEASSRFFRQPANFSPDFNLSISELAALDMCQSRAVFKPMTQSERETMKERCGGSWKLVLRFLIAGETCYRREKCQAIAGPGHSVVVTKSGAVYTFGSNNSGQLGHGTTEEEWRPRLIRSLQGIRIIQATAGAGRTMLISDIGQVYAFGKDSFGDSEYVVDGSRTATTPQLVESLKGIFAVQAVIGNFFTAVLSREGRVYTFSWGSEATLGHQTEPHDQEPHLLKGDLENVPVVQIAAGYCYLLALTCQPSGMSVYSVGCGLGGKLGHGSRTDEKYPRKIEQFKHLKLEPVVIAAGAWHAAVVGKDGRVCTWGWGRYGCLGHGNEECETVPKVVESLLRVKAVHVTTGDYTTFVVAENGDVYSFGCGESSSLGHHMGTATEGQAQRHANLLRPELVVSLKQRRERVVQISLTNSIFWNAHTFALTESAKLYAFGAGDKGQLGTELLAYQSERGNPELVDIDLN*

Protein Length: 540

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTCTTTGTGAGTTGTGCTTTCTGGCGATGGCTTCCGCATGAAATATACTATCAAAATTTCCCATTTTTCTGCCCAATTTTCAGCAATTAAGTACCGATTTAAGTCCCCTCAGCTTCACACACGCAGTCCGAGCTTTAAATCGGCGTGATATTCATCTAACTCGGTGCAAAATTCCTCTCTCTGCAACCCCGAGTCGTTTCGCTCGTTGAAAATCCAGACACCCTCAATTGTTTTCACAAAATCGCAGTTTTACTAATGTGCAGAGGGTTCGATCATCGGACCTAATGGTTTGGGTTCCAAAAGAAGCCCTTGAAGCAGCTATCGCTGACAGCCATTGAGATTGGTTTGATCAGTCTTCAAAAAATTTCTGCAGTTCAATTATCACCTACCAGGCTTCTGCTATTGCTGCTTGAAGTTGGC_-_ATGGACACCACAACAAGCAGTGGCCTATGGCAGTCTACATCAATACAGTATCATTCAGTCAATGAAAATCCTCTGTCAAGTGAACCTCATTTGCAAATTATCCACCAACAGCAACGGCATTGCTATGGAAGTACAAGTCAGGGCGAATTTCCACTAGCGGCCAGTCCCTCCATTGTTCTACATGTGCTTACTGAATGTAATCTGGATCCACAAGACCTTGCCAGTCTGGAGGCTTCATCTCGGTTCTTTAGACAACCAGCAAACTTTTCCCCCGACTTTAATCTATCTATATCTGAACTTGCAGCATTGGACATGTGCCAAAGCAGAGCTGTATTCAAGCCCATGACACAATCAGAGAGAGAAACTATGAAAGAAAGATGCGGAGGTTCTTGGAAGTTGGTATTGCGGTTCTTGATAGCCGGGGAAACATGCTACAGGCGTGAAAAGTGTCAGGCCATAGCTGGTCCTGGTCATAGTGTAGTGGTAACCAAATCTGGTGCAGTTTATACATTCGGCTCTAACAACTCTGGACAGCTTGGCCATGGGACAACAGAAGAAGAATGGCGTCCAAGACTGATCAGGTCTCTTCAGGGGATTCGTATTATCCAGGCAACCGCAGGAGCAGGGCGTACAATGCTTATTAGTGATATAGGACAAGTTTATGCGTTTGGGAAAGACTCTTTTGGTGACTCAGAGTATGTGGTTGATGGCTCTAGGACTGCCACTACTCCCCAGCTGGTGGAGTCTTTGAAAGGAATTTTCGCAGTTCAAGCAGTTATTGGTAATTTTTTCACTGCTGTTCTTTCACGAGAGGGTAGAGTTTACACATTCTCTTGGGGTTCAGAGGCAACTCTTGGTCATCAAACTGAGCCGCATGATCAGGAACCACATTTGCTGAAAGGTGATCTGGAGAATGTTCCTGTGGTACAAATTGCAGCAGGCTATTGTTATTTGTTAGCTCTCACCTGTCAGCCCAGTGGCATGTCAGTATATTCTGTTGGTTGCGGCTTAGGAGGCAAGCTCGGACATGGTTCTAGAACAGATGAAAAGTATCCCCGGAAGATTGAACAATTTAAACATTTGAAGTTAGAGCCAGTTGTGATAGCGGCTGGGGCATGGCATGCTGCTGTTGTGGGCAAAGATGGACGAGTATGTACATGGGGATGGGGTCGATATGGTTGTCTAGGTCATGGAAATGAAGAATGTGAAACTGTTCCTAAGGTTGTGGAATCACTTCTACGAGTGAAGGCAGTTCACGTGACTACAGGTGATTATACCACATTTGTTGTGGCTGAAAATGGGGATGTCTATTCTTTTGGGTGTGGAGAGTCATCAAGCCTTGGGCACCACATGGGCACGGCAACTGAAGGCCAGGCTCAGAGACATGCAAATCTGCTAAGGCCAGAACTAGTGGTTTCATTGAAGCAGAGGCGGGAACGGGTTGTCCAGATCAGTCTGACAAACTCAATATTCTGGAATGCTCACACATTTGCCTTGACAGAGTCGGCAAAACTTTACGCATTCGGAGCTGGAGACAAAGGGCAGCTTGGGACAGAGCTCCTTGCCTATCAAAGCGAGAGGGGAAATCCAGAACTTGTTGATATTGATTTAAATTAA___AGAATATTGTCTTATTTTGCTTGTCTGTCCAAATTCAGTTGAAGCCTATTGTTGCCTCCAATTCTCATCTAACATGTATAGTCTTTCATCCCTTGTTTCTGTCTTTCCAAGTAGATAATACTAGTTGGAACTGGTCGAGAGAATTGTCAACTTTCCTTTTGAAACTGGTCTGGTATTCCTTGAACAGGTTTTCTATCATCAGGGAATGGGAGTACACTACCTGGCACAAGGCAATTCATCACATTTTTTCCAAGCAAGGACTACAAAATTGGGTAACTGTTTGATCTGGAAAATTGTAACCCAGATTTTGCAGTTTGGTAACTTGACATACTGATGAAAAGGTGGAAAGGTCTGCTTACTCCCATAGATATTTTTCATAATGGTAGGCAGAATGCAAATTCCATGATTTGGTATTCTTTTATTCATAGCTGGATTGTGCCCCTCAACTCGTTCAAAATTATGGTAACTTACAAAAATAGAGCCCTTATCTGTCTTTGCCTATAGGATTCCCTTGTGGTAAAATGTATTTATTATAAAAGAAGACTATTCTAACGGGCTTATGTAAACCCTAACATGTGATCTCCCGACTATAAGAGCACGTGTAAATACTTACATTCAATAAAGGAAAATGCTAGGTTAAAAAGGAGATTACGATACTGTACATGCTGTACACTATTTTATCAGATATATATATAAGA

Fln Alignment:

Contig7307___MDTTTSSGLWQSTSIQYHSVNENPLSS-EPHLQIIHQQQRHCYGSTSQGEFPLAASPSIVLHVLTECNLDPQDLASLEASSRFFRQPANFSPDFNLSISELAALDMCQSRAVFKPMTQSERETMKERCGGSWKLVLRFLIAGETCYRREKCQAIAGPGHSVVVTKSGAVYTFGSNNSGQLGHGTTEEEWRPRLIRSLQGIRIIQATAGAGRTMLISDIGQVYAFGKDSFGDSEYVVDGSRTATTPQLVESLKGIFAVQAVIGNFFTAVLSREGRVYTFSWGSEATLGHQTEPHDQEPHLLKGDLENVPVVQIAAGYCYLLALTCQPSGMSVYSVXXXXXXXXXXXSRTDEKYPRKIEQFKHLKLEPVVIAAGAWHAAVVGKDGRVCTWGWGRYGCLGHGNEECETVPKVVESLLRVKAVHVTTGDYTTFVVAENGDVYSFGCGESSSLGHHMGTATEGQAQRHANLLRPELVVSLKQRRERVVQISLTNSIFWNAHTFALTESAKLYAFGAGDKGQLGTELLAYQSERGNPELVDIDLN
Q2QTS8______________MDATTSSGA--SSSLPLHLIIDDALALVSPLQQSFQRSQRHCFGGSAPGEFPLAANPSIVLHVLTSCNLEPDDLAHLEATCSFFRKPANFPPDFQLSMSELAALDMCQKRAIFKPMTQQEREMFKQRCGGSWKLVLRFIMAGEACCRREKSQAIAGPGHSIAVTTSGAVYTFGSNSSGQLGHGSLEEEWRPRIIRSLQGIRIIQAAAGAGRTMLVSDAGRVYAFGKDSFGEVEYAAQGSRVVTTPQLVESLKDIYIVQAAIGNFFTAVLSREGHVYTFSWGNDMKLGHQTEPNDVQPHLLAGPLENIPVVQIAAGYCYLLALACQPSGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQFQALNIQPVVVAAGAWHAAVVGKDGRVCTWGWGRYGCLGHGNEECESVPKVVESLVNVRAVHVATGDYTTFVVSDKGDVYSFGCGESSSLGHN--TITEGN-NRHTNVLSPELVTSLKRTNERVAQISLTNSIYWNAHTFALTDSGKLYAFGAGDKGQLGTELVAQESERGTPERVEIDLS

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
156	16		83		0.994512
341	16		83		0.994512
345		83		16	0.994512
467		16		83	0.994512
650	20		80		0.995493
714	33			66	0.997452
728	66			33	0.997452
851	25			75	0.996473
855			75	25	0.996473
1001			80	20	0.995493
1002	80		20		0.995493
1003	80		20		0.995493
1140		80		20	0.995493
1506		10	90		0.90298
1507			90	10	0.90298
1612	62		37		1.0
1840		16		83	0.994512
1847	83		16		0.994512
1927		42		57	1.0
2030			85	14	0.993533
2043			12	87	0.992554
2045		12	87		0.992554
2046			12	87	0.992554
2050		12		87	0.992554
2051	87	12			0.992554
2055	87		12		0.992554
2056		12		87	0.992554
2058			12	87	0.992554
2059	87			12	0.992554
2060	87	12			0.992554
2062		12		87	0.992554
2064	75	12			0.975346
2507		77		22	0.999999
2508		11		88	0.923564
2680		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain