SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7303

Length: 1625 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7303

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	perakine reductase [Rauvolfia serpentina]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60680.1	NAD(P)-linked oxidoreductase superfamily protein chr1:22347824-22349236 REVERSE LENGTH=346	59%
RefSeq	Arabidopsis thaliana	NP_176267.3	NAD(P)-linked oxidoreductase-like protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002319637.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKC0

Fln msg:

Fln protein: MAADSVVVPRRKLGTQGLEVSALGLGCSGLSGAYGTYTSEEDTVFLFQHAFNRGITFFDTADLYGDFTNEILVGKGLKHLPRDKIQLATKFGAVIKDNSIVEIVGTAEYVRKACEASLQRLDVEYIDLYYQHRVDKRVPIEETVGEMKKLVEEGKVKYIGLCEVSVDTLRRAHAVHPITAVQYEWSLWSRDIENEIIPACRELGIGIVPYSPLGRGFFSGKALTEINYEKTRWTGHPRFQPENLAKNKILFDRVSYIADKNKCTPAQLALAWVVHQGDDVVPIPGTTKIKNLDENIGSLGLKLSAQDLEEIAAAVPENEVAGSRSKYMENTWKFSNTPLPSEV*

Protein Length: 345

Fln nts: ATGGGAGATAACGTCCATTATAATGTTCAGATATGATACGACAGCCACTTTAAAGGTCTATTCCTCAAATTGATTTGGCAAACCACATTTTCGCATTGAGAATCTTAATTCAACGCTGTACCCAGAACATTGGAGGACCTGCGCCTTCCCAGGAAGATAGAAAAGTATCTCTGCAACATTTAATTTTATTGCG_-_ATGGCTGCCGATTCCGTGGTTGTTCCTCGACGCAAGCTCGGCACACAAGGCTTGGAGGTTTCAGCATTAGGTCTTGGATGCTCGGGGCTTTCAGGGGCATATGGTACATATACGTCGGAGGAAGATACCGTTTTTTTATTTCAGCATGCCTTCAATCGAGGAATCACATTTTTTGACACTGCCGACCTGTACGGTGATTTTACCAATGAAATATTGGTTGGGAAGGGCTTGAAACACTTGCCTAGAGACAAAATTCAGCTTGCCACAAAGTTTGGAGCTGTGATAAAGGATAACTCAATTGTTGAAATTGTTGGCACTGCTGAATATGTGAGGAAGGCTTGTGAAGCTAGCCTGCAACGCCTGGATGTCGAATACATCGACTTATACTACCAGCATCGCGTAGACAAAAGAGTTCCCATTGAAGAAACGGTAGGGGAAATGAAGAAGCTTGTGGAAGAGGGAAAAGTAAAGTACATTGGACTTTGCGAAGTCAGCGTTGACACCCTACGAAGAGCCCATGCTGTACATCCCATCACTGCAGTTCAGTATGAGTGGTCTTTATGGTCTAGGGACATTGAAAATGAAATAATCCCCGCATGCAGGGAGCTTGGTATTGGGATTGTTCCTTATAGCCCACTAGGTCGGGGCTTTTTCTCGGGGAAAGCATTGACAGAAATAAATTATGAGAAAACACGATGGACTGGTCATCCAAGGTTTCAACCGGAGAATCTGGCAAAAAACAAGATTCTATTTGACCGTGTTTCATATATCGCGGACAAGAATAAATGCACCCCAGCACAACTTGCATTGGCATGGGTTGTTCATCAAGGGGATGATGTTGTTCCAATTCCAGGAACAACGAAAATCAAGAATCTAGATGAAAACATAGGGTCATTGGGTTTGAAGCTTTCAGCCCAAGACCTTGAAGAGATTGCTGCTGCAGTTCCTGAAAATGAAGTTGCTGGTTCAAGATCGAAATACATGGAGAATACATGGAAGTTTTCTAACACCCCACTTCCAAGTGAGGTCTAG___GTATAACCAAGTTACAACAGTGTAAATAATTGAACAAAGTTAAGTTTGCTAAAATTAAAAATGGTATACTATGTATACGAGATTGGTATGCTAATTAACATAGGAAGGGGACAACTAGTAATGGTTTATATGTTATTATGGAGCTCTAAATTGCTTCAAGGGATTCAGAGTTTTTTCGATCCCCAAAAGGAATGCCACTAGATTCTCTTTCCATTTGGAGAGTGAAGACTCTAAATAGTATTCATGTAGCATTTAAACTAGTATCTGGACAAGGTTACGTGTGCTGACAATGAGAAACTAATGCCAAACTCGTGGTGCAGATATAAAGTTATAGTTTATGGTGTAACTTCTGTCAAGATTTAAAGTTTTCAGAAATAGGAATTAGAGAGCAGTTGTGAGG

Fln Alignment:

Contig7303___MAADSVVVPRRKLGTQGLEVXXXXXXXXXXXXXXXTYTSEEDTVFLFQHAFNRGITFFDTADLYGDFTNEILVGKGLKHLPRDKIQLATKFGAVIKDNSIVEIVGTAEYVRKACEASLQRLDVEYIDLYYQHRVDKRVPIEETVGEMKKLVEEGKVKYIGLCEVSVDTLRRAHAVHPITAVQYEWSLWSRDIENEIIPACRELGIGIVPYSPLGRGFFSGKALTEINYEKTRWTGHPRFQPENLAKNKILFDRVSYIADKNKCTPAQLALAWVVHQGDDVVPIPGTTKIKNLDENIGSLGLKLSAQDLEEIAAAVPENEVAGSRSKYMENTWKFSNTPLP
B8LKC0______________MAAVSVVVPRRKLGTQGLEVSALGLGCSGLSGAYGTYTSEEDTIFLFQHAFNRGITFFDTADMYGHFTNEILVGKGLKHLPRDKIQLATKFGAVIKEDLSFEIVGTAEYVRKACEASLQRLDVEYIDLYYQHRVDKRVPIEETIGEMKKLVEEGKIKYIGLCEVSVDTLRRAHAVHPITAVQYEWSLWSRELENEIIPTCRELGIGVVPYSPLGRGFFSGKALTEINYENTRWSDHPRFQPENLAKNKILFDRISYLADKNKCTPAQLALAWIVRQGDDVVPIPGTTKIKNLDENIGSLSLKLSAQDLEEIAAAVPENEVAGSRSKYMENTWKFSNTPFP

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
1296			80	20	0.995493
1512	7	92			0.999664
1577	11		88		0.923564
1581	14	85			0.993533
1582	14			85	0.993533
1583	14			85	0.993533
1584	14	85			0.993533
1585	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain