SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7290

Length: 2033 nt

UniGene Fasta

>sp_v3.0_unigene7290
TTCGGCACGAGGAAATCAATTAACATGTATGGGTCACGAGTCATAAGAGACCACGTATTGATCAGGGTTGCTATCCAATCAAGCTGAATGCCTCAGAAACATGGACCGAGTTGTTTATTGGGAGCTGATATATTCGTAGTAGCAGAGGTTGAGAACGTACTTTCAATAGCAGAGGAGCATCAGCATCAGTGATATGTGCCCACCTATAGGTGCTTGCATAAGTACCAGTACGACTTGTACACATAGGGAAGGTTGAACGTGCATACTCTAGTTGAGTTGTTGAATCGAGAAAACTAATTCTCCATATAGTGGGGTTGAGATTGCATTGCCAGAGTCGAGTTCATGGGCCATGTTGTTCAAAACGGGGTGTTGTCATCTTTTTTTTACAAGGTTGAGTTTTGTTTGAGAGATCTAGAAGAAAACAAGCATCAAACTCACATCTTCAGTAGATTATAAATCAAGTGTGGACAGCGATACATATCTCAGATTGGGTGGTTGTACACGAATCGTCACCAGCTGAGCAGATCTCTAGGGCAGCTGTGCAGAGGTGGAAGGACAACATGCTATGAACACAATCTCTTGGGGACATTTACTACAAGCAGTGAAGGAGGCTAAGCATCATAATTAAAAGCAAATTCACAGAGGCTCAAACCAGAGATATTTGATCGAGGAATGTATGCTGGACCTGTGGGATGGTTTGGAGGCAAGGAGGCTGAATTTGCTGTGGGAATCAGATCAGCATTGATGCAAAAGAACAACTTAAATTCTTCCCAGAGAAACAAGTTTCCTCAGGGTACATGCCTATATCTTTATGCAGGAGCTGGAATAGTAAAAGGCTCTATGCCATCTTCCGAATGGCAAGAACTTGACCTGAAGGCAAGCCAGTTTGAAGAGTTATTTCAGCCTAGCAATGCCTTACAGAAGTCTCCCAATATCAGCGGAATATGGGCATCTCTCAGTGTCAAGGACTGATATTGGCTTGGATTCTGCATATCACTCTGATCAAGGTTGTCATCAGTCAGGACTCAGAGCTGCTACCCATCACCTGCATGTGGATTTACCTCTCATATTGATGAACTCTGGCATGCATTTCATTCTCTTGGATATGGGAGACAATCAGATGTATCAGCTGCAAAAGTGATATCAATCTGAACACTAGACCAAATCTCCTAGCTTAAAGCTGTTATTCAGTGCCCACTTTAATGGGTTCCACTATATTTTTTCTCAAACCAGATCAACCCCCAAGAATTTCAAAATGAGGTATCAAATCAACAATTGATCAGGTTAACCATTGTGGGTATGTTATGCTGTATGACATTACTTTGCCTGCTACTAATGATAATATTTCAGATTGATGACTATTGATACTCCTTCAGAGCAACATAGGGCCTTTCGGCCGTGTAAACTTTCACTGTGCTTTCAGAGAACTCATTTAGTGGCATTTCACAGCATCAGAATTTGAAATGCTTTGAATGGTTCAGATACCTTGATATCAAGGCAGAACGTTATTCAAAGTTAATAAGATTGTACCCATCCTATTCTGCCAAAAGCTTGAGTAATGGATTGCATAAAGAAGAACTGATTTTAATCCAACAAGCCAACGAGTGTTCTTTATTTGTTGGCAGCCTTAGAACTGCCCAGGAGGCATATGCAGGGTTATTATTTACTAGACATATTAGCTAGCCAACCGTCCCAGAAATTCTCATATAAATGTGGTTAAGAAAAAGTCGTCTATTAACAAACTATTGGATTGAAGAATTAAAGGTCGTTTATAACAAATTGCTGGATTGAAGAACTAATATCAGTGGCTACCTTACCGAAGAACCCAGTTTGATCAGTTTGGTCCTTTGGCTAAGGATCCACATCCATGTATAAGAGATTTGGTCAACAAGAAAGGTGAAAAAAAAGGTTCTGTACAGGGCATGCCGTACTATGTTCTACTTGTCAGGTGAATCAGTGACAGGTTTTACTTTGATGTAGAAATTCAGGCCACGTCTTTGGAAGCTCATATTTTCAAGTTTCAACTGAATTTT

Ace file of the UniGene sp_v3.0_unigene7290

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isochorismate synthase n=1 Tax=Micromonas sp. RCC299 RepID=C1E747_MICSR	-	-	2.0e-20	35%
FL-Next	sp=Isochorismate synthase 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	Isochorismate synthase	-	-	1.653e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Isochorismate synthase.	EC:5.4.4.2	-	4.413e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Ubiquinone and other terpenoid-quinone biosynthesis	00130	4.413e-12	%
Sma3	Biosynthesis of siderophore group nonribosomal peptides	01053	4.413e-12	%
Sma3	Biosynthesis of phenylpropanoids	01061	4.413e-12	%
Sma3	Biosynthesis of plant hormones	01070	4.413e-12	%
Sma3	Metabolic pathways	01100	4.413e-12	%
Sma3	Biosynthesis of secondary metabolites	01110	4.413e-12	%

Source	Gene names
Sma3	At1g18870; At1g74710; F1M20.39; F25A4.31; F6A14.3; GSVIVT00000099001; ICS; ICS1; ICS2; OsI_31053; OsJ_29067; PHYPADRAFT_118465; POPTRDRAFT_569985; RCOM_1513750; VITISV_021244;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	isochorismate synthase activity	GO:0008909	Molecular Function	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	salicylic acid biosynthetic process	GO:0009697	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-
Sma3	phylloquinone biosynthetic process	GO:0042372	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Isochorismate synthase	IPR004561	-	-
Sma3	ADC synthase	IPR005801	-	-
Sma3	Chorismate binding, C-terminal	IPR015890	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G18870.1	ICS2, ATICS2 isochorismate synthase 2 chr1:6515486-6519176 FORWARD LENGTH=562	6.0e-20	55%
RefSeq	Arabidopsis thaliana	NP_001154351.1	Isochorismate synthase 2 [Arabidopsis thaliana]	6.0e-20	55%
RefSeq	Populus trichocarpa	XP_002317989.1	isochorismate synthase [Populus trichocarpa]	1.0e-21	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9M9V6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 324 - 562

Fln protein: FGTRKSINMYGSRVIRDHVLIRVAIQSS*MPQKHGPSCLLGADIFVVAEVENVLSIAEEHQHQ*YVPTYRCLHKYQYDLYT*GRLNVHTLVELLNREN*FSI*WG*DCIARVEFMGHVVQNGVLSSFFYKVEFCLRDLEENKHQTHIFSRL*IKCGQRYISQIGWLYTNRHQLSRSLGQLCRGGRTTCYEHNLLGTFTTSSEGG*AS*LKANSQRLKPEIFDRGMYAGPVGWFGGKEAEFAVGIRSALMQKNNLNSSQRNKFPQGTCLYLYAGAGIVKGSMPSSEWQELDLKASQFEELFQPSNALQKSPNISGIWASLSVKD*

Protein Length: 325

Fln nts: TTCGGCACGAGGAAATCAATTAACATGTATGGGTCACGAGTCATAAGAGACCACGTATTGATCAGGGTTGCTATCCAATCAAGCTGAATGCCTCAGAAACATGGACCGAGTTGTTTATTGGGAGCTGATATATTCGTAGTAGCAGAGGTTGAGAACGTACTTTCAATAGCAGAGGAGCATCAGCATCAGTGATATGTGCCCACCTATAGGTGCTTGCATAAGTACCAGTACGACTTGTACACATAGGGAAGGTTGAACGTGCATACTCTAGTTGAGTTGTTGAATCGAGAAAACTAATTCTCCATATAGTGGGGTTGAGATTGCATTGCCAGAGTCGAGTTCATGGGCCATGTTGTTCAAAACGGGGTGTTGTCATCTTTTTTTTACAAGGTTGAGTTTTGTTTGAGAGATCTAGAAGAAAACAAGCATCAAACTCACATCTTCAGTAGATTATAAATCAAGTGTGGACAGCGATACATATCTCAGATTGGGTGGTTGTACACGAATCGTCACCAGCTGAGCAGATCTCTAGGGCAGCTGTGCAGAGGTGGAAGGACAACATGCTATGAACACAATCTCTTGGGGACATTTACTACAAGCAGTGAAGGAGGCTAAGCATCATAATTAAAAGCAAATTCACAGAGGCTCAAACCAGAGATATTTGATCGAGGAATGTATGCTGGACCTGTGGGATGGTTTGGAGGCAAGGAGGCTGAATTTGCTGTGGGAATCAGATCAGCATTGATGCAAAAGAACAACTTAAATTCTTCCCAGAGAAACAAGTTTCCTCAGGGTACATGCCTATATCTTTATGCAGGAGCTGGAATAGTAAAAGGCTCTATGCCATCTTCCGAATGGCAAGAACTTGACCTGAAGGCAAGCCAGTTTGAAGAGTTATTTCAGCCTAGCAATGCCTTACAGAAGTCTCCCAATATCAGCGGAATATGGGCATCTCTCAGTGTCAAGGACTGA___TATTGGCTTGGATTCTGCATATCACTCTGATCAAGGTTGTCATCAGTCAGGACTCAGAGCTGCTACCCATCACCTGCATGTGGATTTACCTCTCATATTGATGAACTCTGGCATGCATTTCATTCTCTTGGATATGGGAGACAATCAGATGTATCAGCTGCAAAAGTGATATCAATCTGAACACTAGACCAAATCTCCTAGCTTAAAGCTGTTATTCAGTGCCCACTTTAATGGGTTCCACTATATTTTTTCTCAAACCAGATCAACCCCCAAGAATTTCAAAATGAGGTATCAAATCAACAATTGATCAGGTTAACCATTGTGGGTATGTTATGCTGTATGACATTACTTTGCCTGCTACTAATGATAATATTTCAGATTGATGACTATTGATACTCCTTCAGAGCAACATAGGGCCTTTCGGCCGTGTAAACTTTCACTGTGCTTTCAGAGAACTCATTTAGTGGCATTTCACAGCATCAGAATTTGAAATGCTTTGAATGGTTCAGATACCTTGATATCAAGGCAGAACGTTATTCAAAGTTAATAAGATTGTACCCATCCTATTCTGCCAAAAGCTTGAGTAATGGATTGCATAAAGAAGAACTGATTTTAATCCAACAAGCCAACGAGTGTTCTTTATTTGTTGGCAGCCTTAGAACTGCCCAGGAGGCATATGCAGGGTTATTATTTACTAGACATATTAGCTAGCCAACCGTCCCAGAAATTCTCATATAAATGTGGTTAAGAAAAAGTCGTCTATTAACAAACTATTGGATTGAAGAATTAAAGGTCGTTTATAACAAATTGCTGGATTGAAGAACTAATATCAGTGGCTACCTTACCGAAGAACCCAGTTTGATCAGTTTGGTCCTTTGGCTAAGGATCCACATCCATGTATAAGAGATTTGGTCAACAAGAAAGGTGAAAAAAAAGGTTCTGTACAGGGCATGCCGTACTATGTTCTACTTGTCAGGTGAATCAGTGACAGGTTTTACTTTGATGTAGAAATTCAGGCCACGTCTTTGGAAGCTCATATTTTCAAGTTTCAACTGAATTTT

Fln Alignment:

Contig7290___EIFDRGMYAGPVGWFGGKEAEFAVGIRSALMQKNNLNSSQRNKFPQGTCLYLYAGAGIVKGSMPSSEWQELDLKASQFEELFQPSNALQ
Q9M9V6______________ESFDRGMYAGPIGFFGGGESEFSVGIRSALVEK-------------GLGALIYAGTGIVSGSNPSSEWNELELKISQFTKSLEHESALQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1558	75		25		0.996473
1617	75		25		0.996473
1623		25		75	0.996473
1696		85		14	0.993533
1882	86		13		0.999973

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain