SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7288

Length: 2248 nt

UniGene Fasta

>sp_v3.0_unigene7288
ATACACTAGTAAGGAGGATTGCTAGATAACCCATTCCACACCCCACTTTTCTGTTAGTCTGATTACTCTAAACCTTCGGTACATCATCTCTTGTTTCTTTCTATCTGTTTTCTGCAGTTTTTCCAAGAGGTGCCGTGCAAGCACATGCACCTTGACCATGCAATTGGACGCACATAAACATATTCTTTGATTGTTCTGTTCCTTTCCCCTGTTGGGACTTGCTTTCGTTCACTTAAAATCGCTTCCTTCTCATTTGGGTTCTTCTTCTGCTTCTTGCTTAGTCATTTGGGTACTCTCTAAAATTTGTTATCCTCACTTGTTTTCGGCATCCTTACCTGGGTCCTTCTCGGAATTGTTTGTTTTCACTCGGTTCCTGCTTCAGAATTTATTGCCCTCACTTGGGCTCTGCTCTGAGTTGTGTTTTCTCAATTGGGTTCTGCTTGAAATTCATTCTTCTTGCCTGGCTTCAACTGAGAATTGATTATTTATCCCTATTTGGAGATCTAGCTACACCTGATCATCCCTTGGTGGCAATCCAAAGTACGGTGTTCTCCACTGTTGGGGAAATTTGTGTATTGCGTTGATATGTTCTAACTTGCAGGGATTTTTAAGGCTTGAAGATCCAAATCCTGTCATAATTGGGTCAGCCTTCTGTTGCAGCACATGGGGAGATTTAGTATTCAAGTGTTGCTACTAGTTCTCAGCTGCATTGGTGAGGTTGGGCTGGCATTCTTCTACGGAAGACATGAAACAGTCAGGGAGGTCAAGACCTTTGGCTCTCTGTCGGAGCAGCAGGAGGATTGCAAGCATAACGGAGCAATGCCATTGAGGCCTCATAGAGTGTCTATTGCTGAATTTGGGGCAGTTGGTGATGGAGTCACTGTTAATACACTCGCCTTTCAAAATGCTATTTTCTACCTTAACACCTTTGCCGATAAGGGTGGAGCACAACTCTTTGTGCCAGCAGGAAAATGGTTGACTGGAAGCTTCAATCTAACAAGTCACCTTACGCTGTACTTGGACACTGGGGCTGTAATCCTTGGATCGCAGGACTCAAAAGATTGGCCAGTCATTAACCCCTTACCCTCATATGGTCGAGGCAGGGAACTGCCAGGTGGAAGGCACAACAGTTTGATACATGGGTACAATTTGACGGATGTTGTAATAACAGGCGATAATGGAACAATTGATGGTCAAGGAGCTGTTTGGTGGGGTTGGTTCCGTAATAAAACACTAGATTTCACTCGTCCGCATCTTGTGGAATTGCAGGACTCACAAGATATTATTATTGCAAATTTGACTTTCTTGAACTCGCCTTTTTGGACCATCCACCCGATATACTGCAGTAACGTCCGCATTCAGAATCTTACAATCATCTCTCCTCTTGATTCACCTAACACAGATGGCATTGATCCAGATTCAAGCTCTGATGTGTGCATAGAGGACTGTTACATTAGCTGTGGCGATGATGTCATTTCCATCAAAAGTGGTTGGGATGAGTATGGTATTACTTATGGGCGCCCTAGCTCCAATATTATTATCCGTCGTGTGATTGGACAAACACATACAAGTTCTGGTCTTGCTTTGGGCAGTGAAATGTCTGGTGGCATCAAAGGTGTCCATGCTCAAGACATTCAGATTTTCAACTCAAGAAGAGGCCTGAGAATAAAAACAGCCCCAGGCAGGGGCGGTTATGTGAGGGATGTCTACATATCCAATGTTACAATGAAGAATGTGAGCGTTGGTATTGTCTTTACTGGACTTTATGGTGATCATCCTGATGATAGATATGATCCAAATGCTCTTCCAGATATACAAAGAATAACATTTAAGGACATCCTCGGTGATGAAATCAAAACTGCAGGTTCCGTAGAAGGCATTCAAAATGCTCCCTTCAAAGATATTTGCTTATCAAACATTCAGTTCAATGTTACCACAGAGCCTTTCTGGAACTGTTCATACGTGGGAGGATTCTCGGAGTCAGTGTATCCTGAACCATGTACAGAGCTTCAGCCCCAAATCCCTCATGACTCGCCAGTATGTTATTCTTCTTATGTCAGCAGCACATGTAAGGAAATTTAGAATAAAGCCAGTTTATAATCTACGTGTATTTGATTTTGTTCTTTAATGAGTTGTAGATTGATTCAGGAATCCCGTTATTTATGTATTTTGCGGAGAATTTTGTACTGTGGTCAGTGAAATGGAAGTTTTTACCACTCAATAATATTCTAGTTGTCTCCCGGATACT

Ace file of the UniGene sp_v3.0_unigene7288

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9TA63_RICCO	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Polygalacturonase, putative	-	-	1.147e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polygalacturonase.	EC:3.2.1.15	-	3.608e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040		3.608e-13	%
Sma3	Starch and sucrose metabolism	00500		3.608e-13	%
Sma3	Metabolic pathways	01100		3.608e-13	%
Sma3	Galacturan 1,4-alpha-galacturonidase.	EC:3.2.1.67	-	3.19e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	3.19e-09	%
Sma3	Starch and sucrose metabolism	00500	3.19e-09	%
Sma3	Metabolic pathways	01100	3.19e-09	%

Source	Gene names
Sma3	6J23.27; 8F2.19; AT3g62110/T17J13_70; AT4g23500; AT4g23820; AT4g33440; At1g19170; At2g23900; At3g06770; At3g16850; At3g42950; At3g48950; At3g61490; At3g62110; At4g23500; At4g23820; At4g23820/F9D16.290; At4g33440; At5g41870; At5g49215; B1040D09.13-1; B1040

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G62110.1	Pectin lyase-like superfamily protein chr3:22997313-22999503 REVERSE LENGTH=471	63%
RefSeq	Arabidopsis thaliana	NP_567126.1	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002301554.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg:

Fln protein: MGRFSIQVLLLVLSCIGEVGLAFFYGRHETVREVKTFGSLSEQQEDCKHNGAMPLRPHRVSIAEFGAVGDGVTVNTLAFQNAIFYLNTFADKGGAQLFVPAGKWLTGSFNLTSHLTLYLDTGAVILGSQDSKDWPVINPLPSYGRGRELPGGRHNSLIHGYNLTDVVITGDNGTIDGQGAVWWGWFRNKTLDFTRPHLVELQDSQDIIIANLTFLNSPFWTIHPIYCSNVRIQNLTIISPLDSPNTDGIDPDSSSDVCIEDCYISCGDDVISIKSGWDEYGITYGRPSSNIIIRRVIGQTHTSSGLALGSEMSGGIKGVHAQDIQIFNSRRGLRIKTAPGRGGYVRDVYISNVTMKNVSVGIVFTGLYGDHPDDRYDPNALPDIQRITFKDILGDEIKTAGSVEGIQNAPFKDICLSNIQFNVTTEPFWNCSYVGGFSESVYPEPCTELQPQIPHDSPVCYSSYVSSTCKEI*

Protein Length: 474

Fln nts: ATACACTAGTAAGGAGGATTGCTAGATAACCCATTCCACACCCCACTTTTCTGTTAGTCTGATTACTCTAAACCTTCGGTACATCATCTCTTGTTTCTTTCTATCTGTTTTCTGCAGTTTTTCCAAGAGGTGCCGTGCAAGCACATGCACCTTGACCATGCAATTGGACGCACATAAACATATTCTTTGATTGTTCTGTTCCTTTCCCCTGTTGGGACTTGCTTTCGTTCACTTAAAATCGCTTCCTTCTCATTTGGGTTCTTCTTCTGCTTCTTGCTTAGTCATTTGGGTACTCTCTAAAATTTGTTATCCTCACTTGTTTTCGGCATCCTTACCTGGGTCCTTCTCGGAATTGTTTGTTTTCACTCGGTTCCTGCTTCAGAATTTATTGCCCTCACTTGGGCTCTGCTCTGAGTTGTGTTTTCTCAATTGGGTTCTGCTTGAAATTCATTCTTCTTGCCTGGCTTCAACTGAGAATTGATTATTTATCCCTATTTGGAGATCTAGCTACACCTGATCATCCCTTGGTGGCAATCCAAAGTACGGTGTTCTCCACTGTTGGGGAAATTTGTGTATTGCGTTGATATGTTCTAACTTGCAGGGATTTTTAAGGCTTGAAGATCCAAATCCTGTCATAATTGGGTCAGCCTTCTGTTGCAGCAC_-_ATGGGGAGATTTAGTATTCAAGTGTTGCTACTAGTTCTCAGCTGCATTGGTGAGGTTGGGCTGGCATTCTTCTACGGAAGACATGAAACAGTCAGGGAGGTCAAGACCTTTGGCTCTCTGTCGGAGCAGCAGGAGGATTGCAAGCATAACGGAGCAATGCCATTGAGGCCTCATAGAGTGTCTATTGCTGAATTTGGGGCAGTTGGTGATGGAGTCACTGTTAATACACTCGCCTTTCAAAATGCTATTTTCTACCTTAACACCTTTGCCGATAAGGGTGGAGCACAACTCTTTGTGCCAGCAGGAAAATGGTTGACTGGAAGCTTCAATCTAACAAGTCACCTTACGCTGTACTTGGACACTGGGGCTGTAATCCTTGGATCGCAGGACTCAAAAGATTGGCCAGTCATTAACCCCTTACCCTCATATGGTCGAGGCAGGGAACTGCCAGGTGGAAGGCACAACAGTTTGATACATGGGTACAATTTGACGGATGTTGTAATAACAGGCGATAATGGAACAATTGATGGTCAAGGAGCTGTTTGGTGGGGTTGGTTCCGTAATAAAACACTAGATTTCACTCGTCCGCATCTTGTGGAATTGCAGGACTCACAAGATATTATTATTGCAAATTTGACTTTCTTGAACTCGCCTTTTTGGACCATCCACCCGATATACTGCAGTAACGTCCGCATTCAGAATCTTACAATCATCTCTCCTCTTGATTCACCTAACACAGATGGCATTGATCCAGATTCAAGCTCTGATGTGTGCATAGAGGACTGTTACATTAGCTGTGGCGATGATGTCATTTCCATCAAAAGTGGTTGGGATGAGTATGGTATTACTTATGGGCGCCCTAGCTCCAATATTATTATCCGTCGTGTGATTGGACAAACACATACAAGTTCTGGTCTTGCTTTGGGCAGTGAAATGTCTGGTGGCATCAAAGGTGTCCATGCTCAAGACATTCAGATTTTCAACTCAAGAAGAGGCCTGAGAATAAAAACAGCCCCAGGCAGGGGCGGTTATGTGAGGGATGTCTACATATCCAATGTTACAATGAAGAATGTGAGCGTTGGTATTGTCTTTACTGGACTTTATGGTGATCATCCTGATGATAGATATGATCCAAATGCTCTTCCAGATATACAAAGAATAACATTTAAGGACATCCTCGGTGATGAAATCAAAACTGCAGGTTCCGTAGAAGGCATTCAAAATGCTCCCTTCAAAGATATTTGCTTATCAAACATTCAGTTCAATGTTACCACAGAGCCTTTCTGGAACTGTTCATACGTGGGAGGATTCTCGGAGTCAGTGTATCCTGAACCATGTACAGAGCTTCAGCCCCAAATCCCTCATGACTCGCCAGTATGTTATTCTTCTTATGTCAGCAGCACATGTAAGGAAATTTAG___AATAAAGCCAGTTTATAATCTACGTGTATTTGATTTTGTTCTTTAATGAGTTGTAGATTGATTCAGGAATCCCGTTATTTATGTATTTTGCGGAGAATTTTGTACTGTGGTCAGTGAAATGGAAGTTTTTACCACTCAATAATATTCTAGTTGTCTCCCGGATACT

Fln Alignment:

Contig7288___RPHRVSIAEFGAVGDGVTVNTLAFQNAIFYLNTFADKGGAQLFVPAGKWLTGSFNLTSHLTLYLDTGAVILGSQDSKDWPVINPLPSYGRGRELPGGRHNSLIHGYNLTDVVITGDNGTIDGQGAVWWGWFRNKTLDFTRPHLVELQDSQDIIIANLTFLNSPFWTIHPIYCSNVRIQNLTIISPLDSPNTDGIDPDSSSDVCIEDCYISCGDDVISIKSGWDEYGITYGRPSSNIIIRRVIGQTHTSSGLALGSEMSGGIKGVHAQDIQIFNSRRGLRIKTAPGRGGYVRDVYISNVTMKNVSVGIVFTGLYGDHPDDRYDPNALPDIQRITFKDILGDEIKTAGSVEGIQNAPFKDICLSNIQFNVTTEPF---WNCSYVGGFSESVYPEPCTELQPQIPHDSPVCYSSYVSSTCKE
B8LQW0______________RAQSVSIAEFGGVGDGTTVNTEAFRKAIEHLSEFSETGGGQLYIPPGRWLTGSFNLTDHFTLYLHKEAVILGSQDLEDWPLIPPLPSYGMGRDAPGPRYSSLINGYNLTDVVITGDNGTIDGQGAIWWQKFHKKILKNTRGYLVELMYSKDIIISNLTFLNSPAWNLHPVYSSNILIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIQAINSETGIRIKTSPGRGGFVKDIFVNRMTMVNMKWAFTMTGSYGSHPDNKYDPNALPAVERISYSNIVATNVSVAGKLDGIANAPFKDICLTNVTITMAAKSKKYPWNCTYIHGLSNAVYPQPCSLLEERPAEGDAFCPSPQELDTTEE

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
316	16	83			0.994512
335		87		12	0.992554
404		87		12	0.992554
569			12	87	0.992554
630	10	90			0.90298
633			10	90	0.90298
634		90	10		0.90298
792	11		88		0.923564
1014	11		88		0.923564
1015			11	88	0.923564
1017		88	11		0.923564
1053	12	87			0.992554
1055		87		12	0.992554
1111	16	83			0.994512
1115			83	16	0.994512
1131	16			83	0.994512
1133			16	83	0.994512
1135	83		16		0.994512
1159	14		85		0.993533
1160	14			85	0.993533
1620	25	75			0.996473
1664		25	75		0.996473
1666	75			25	0.996473
2236		20		80	0.995493
2238		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain