SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7280

Length: 3500 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene7280
CCTCGTCTTCGTAGTATGTTCTCGCCTGTTCGATACGCAGATCGGCCGTTCTTCATTATATATAGTAAAATTCGTCATCTTCTGCCAGAAAGACCCAGATCCAAACGGTACCAAAACAATATTCATGAAATTGGGTTTAGGGTTTCCGGATCAGGCATTAAAGGCGCAAGCTTTGTTTTCGTGAAGTCCTTCAATTCCTTTTTTCATGGCTTTATTAAACCACGGACTTGCATTCTGCTGAAGAGATTGTTCAAACGGTCCCGATCGATCCAGAATTTGTAAATTAGGTTTTCGTATGAAGTTCTGGAATCCTCATCTTTTATTCTAAAAAGCATTCTTTTTTGTTATGTTTTGGCATCGTAATTGTTTGCTCTGCGTTAGCGGTTTAAATCGGTTCTGGATCGGTCAAAATCTCTAGTTTATCAAGATTCATGTCCTGAGCTTACTCAATCTCTGAAGATGGGGTCTAGCACGAGAATTCTTTTGGTGATATTTACATTGTTTATCGCCATATGCCCTGCATTGTGCTCGGTGTGCAGCATAGATCTGGGGTCTGAATCGATGAAAGTTGCAGTGGTGCATCTAAAGCCCGGGCAGAGCCCAATTTCCATAGCGATAAATGAAATGTCGAAGCGGAAAAGCCCTGCCCTCGTGGCATTCAATGGAGGAGACCGCCTGGTCGCCGAAGAAGCCGCCGGGATCTCTGCCCGCTACCCTGATAAGGTCATCGTGCAGGTTAGAGACATGGTTGGTAAATCTTACAACCAGGTTAAAGCTCTTATAGATTCACTATATCTTCCATATGACATAGTTGAAGATTCTAGAGGTGCTGCTGGCATTAGGGTAGATAATGACGGTAAATCAGTTTATACTGTAGAGGAGTTGGTTTCCATGATTTTGAGTTATGGTAGGCATTTGGCGGAGTACCATACCAAAGTCCCTATCAAGGATGCTGTGATTAGCGTGCCACCTTTCTTTGGCCAAGCTGAGAGGAGTGGTATCATTCAAGCAGCTCAGCTTGCTGGCCTCAATGTATTATCTTTGATCAACGAGCATTCTGGTGCAGCTATTCAGTATGGGATTGACAAGGATTTCACAAATGCATCTCGGCATGTTGTGTTTTATGACATGGGTTCTAACAGCGCTTATGCTGCTCTTGTTTATTTCTCTGCATATACGACAAAGGAGCATGGGAAGAGTATTTCGGCTAACCAATTCCAGGTCAAAGATGTCAGATGGAAGGCAAATCTTGGCGGGCAAACTATGGAAATGCGTCTTGTTGAGCATTTTGCTGATGAATTTAATAGGCAAGTTGGGAATGGTATAGATGTGCGGAAATCTCCTAAAGCAATGGCTAAGTTGAAGAAACAAATTAAGCGCACCAAAGAAATCCTTAGTGCTAATAATGAGGCCCCTCTATCAGTTGAATCAATTTATGAGGATCGTGATTTCAGGAGTACCATAACGCGGCAGAAATTTGAAGAGCTTTGTGGGGATCTGTTTGAGGAGGCACTTTTGCCTGTAAAGGAAATTCTTAAGCATTCTGGCTTGAAGGTGGAAGACCTTTATGCTGTAGAGTTGATAGGTGGAGCGACTCGCATGCCGAAATTGCAGGCATTGCTCCAAGAATTTCTTGGCAGAAAAGACTTAGATAAGCATCTTGATGCTGATGAAGCTGTAGTGCTCGGATCAGCACTTCATGCTGCAAATTTGAGTGATGGAATCAAGCTAACCCGCAAGTTAGGAATGATTGATGGTGCAACATATGGTATCATACTTGAATTGAATAGTCCTGAACTAGATAATGAAGAAAGTAATCAACAAGTACTTATCCCAAGGATGAAGAAGCTTCCGAGCAAGGCATTCAAGTCTGTAAAGTATAGCAAGGACTTTGAAGTTTCACTTCAATATGATCCTTCTGATATACTACCACCAGGGATTTCCTCTAACAAAATTGCAACTTACCACGTTTCAGGCTTAACTGATACCTACACAAAGTATGCAACACGAAACCTCTCTGCACCGATAAAGACAAACTTACACTTTTCCCTGAGCAGAAGTGGTGTGGTATCATTTGATCGTGCTGAGACTGTAATAGAAGTTTCAGAATGGGTTGATGTTCCAGTGAAGAATTTAACAGCTGAAAATTCAACCTCAATTTTGTCCAATGCATCATCTGAATCAAGTACAAGTCCAACGAGCTCTAGTGAAAAGGAAGAAGGCAACTTAAAGGGCGAGGGATTTGAGAATAATGCTACAACTCCTGAAAATGTAACTCAAGATTCAAAGCCCGTAACTGAAAAGAAATTGAGAAAAAGAACTTTTAGAGTTCCTCTCAAGGTAATGGATGCTACTGATGGTCCTGGAAGAGCCCTCTCTAAAGAATCATTTGTAGAAGCTGGAGTTAGGCTTTCAGATCTGAATCGGAAAGATGCAGAGAGGAAAAGGACAGCTGAACTTAAAAATAGCCTCGAGGAATACATCTATTCTACTAAAGAAAAGTTGGACTCATCTGAGGACATTGAGAAAGTCTCAACTCAAGAACAGCGTAGCTCCTTCAAAGACAAACTTGACGAGGCTCAAGAATGGTTGTACATGGATGGAGAGGATGCTTCTGCAGATGAATTTGAAAAACACCTTGATTCACTGAAAACAACTGGAGGGGAAATATTTTTCAGATTGAAGGAACTGAGTGCTCGACCTGTAGCGGGTAAATATGTTCGGGAATATCTTGATGGATTGCATAAGACATTAGGTGAATGGGAGAAAACCAAACCTTGGATTGCCTCATCGTATAAAAATGAGATTTTGGATGAAGTGGATAAGATAAAGAAATGGCTTGATGAGAATGAAGCTAAACAGGCCAAAACTCCAGGATACATGGTTCCCATCTTCACATCTGATGAAGTATATGGAAAAGTTGGAAAGCTTCAAGAGAAGGTGCTTAAGATCAGCAATATCCCTAGGCCAAAGCCAAAGGTTGAAAAACCTCCAAAAAATGACTCTGTCAAGGCTGACAACCAAGATGATGGCAGATCCACTTCCAGCAACAGCACAGATAACGAAGCTGCTGGAGAAACGACACGTGAACCAAGTGAATCTGAAGGACACTCACAGGGAGAAAAGATACATGAACCAAGTGAATCTGAAGGACACTCAGAGGGATCAAATGGCGAACAAGATGCCAACGAGGAACCTTTTGATGAACTATGAAAGGAGCAAGAAATTTCAAAAATATGCAAGACCTACGTACAATTAGGGTGCAGAAATTGTTAGTGAATGTACAGAAAGTGTTTGGCAGGGCTCATGTCACCGTCGATTTTGATAAACATCATTTTTTCCTGTCTTACATTCCGGCAGTAGGCAGTGGGATGCATCCTATGTAACCCACAAATGGTCTCTTTTGTAAACGTACAATATTCGAAAGCAAGACCAGTCTTTTGGTCACTAATACTGGTCAAACATTTATAACATTTCTGATTATATTTTCAGGGAAAAAA

Ace file of the UniGene sp_v3.0_unigene7280 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hypoxia up-regulated 1 [Arabidopsis thaliana] gb\|AEE83781.1\| hypoxia up-regulated 1 [Arabidopsis thaliana]	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%

Source	Gene names
Sma3	AT4g16650; AT4g16660; At4g16660; GSVIVT00006855001; GSVIVT00026731001; GSVIVT00032542001; Hsp70; OJ1038_A06.19; OJ1311_H06.29; Os02g0710900; OsI_08658; OsJ_08115; PHYPADRAFT_120722; POPTRDRAFT_560245; POPTRDRAFT_824995; RCOM_0673570; dl4350w; dl4355w;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3		IPR004348	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G16660.1	heat shock protein 70 (Hsp 70) family protein chr4:9377225-9381232 FORWARD LENGTH=867	61%
RefSeq	Arabidopsis thaliana	NP_567510.1	hypoxia up-regulated 1 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002308826.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRY5

Fln msg: your sequence is longer than subject: 918 - 652

Fln protein: MGSSTRILLVIFTLFIAICPALCSVCSIDLGSESMKVAVVHLKPGQSPISIAINEMSKRKSPALVAFNGGDRLVAEEAAGISARYPDKVIVQVRDMVGKSYNQVKALIDSLYLPYDIVEDSRGAAGIRVDNDGKSVYTVEELVSMILSYGRHLAEYHTKVPIKDAVISVPPFFGQAERSGIIQAAQLAGLNVLSLINEHSGAAIQYGIDKDFTNASRHVVFYDMGSNSAYAALVYFSAYTTKEHGKSISANQFQVKDVRWKANLGGQTMEMRLVEHFADEFNRQVGNGIDVRKSPKAMAKLKKQIKRTKEILSANNEAPLSVESIYEDRDFRSTITRQKFEELCGDLFEEALLPVKEILKHSGLKVEDLYAVELIGGATRMPKLQALLQEFLGRKDLDKHLDADEAVVLGSALHAANLSDGIKLTRKLGMIDGATYGIILELNSPELDNEESNQQVLIPRMKKLPSKAFKSVKYSKDFEVSLQYDPSDILPPGISSNKIATYHVSGLTDTYTKYATRNLSAPIKTNLHFSLSRSGVVSFDRAETVIEVSEWVDVPVKNLTAENSTSILSNASSESSTSPTSSSEKEEGNLKGEGFENNATTPENVTQDSKPVTEKKLRKRTFRVPLKVMDATDGPGRALSKESFVEAGVRLSDLNRKDAERKRTAELKNSLEEYIYSTKEKLDSSEDIEKVSTQEQRSSFKDKLDEAQEWLYMDGEDASADEFEKHLDSLKTTGGEIFFRLKELSARPVAGKYVREYLDGLHKTLGEWEKTKPWIASSYKNEILDEVDKIKKWLDENEAKQAKTPGYMVPIFTSDEVYGKVGKLQEKVLKISNIPRPKPKVEKPPKNDSVKADNQDDGRSTSSNSTDNEAAGETTREPSESEGHSQGEKIHEPSESEGHSEGSNGEQDANEEPFDEL*

Protein Length: 919

Fln nts: CCTCGTCTTCGTAGTATGTTCTCGCCTGTTCGATACGCAGATCGGCCGTTCTTCATTATATATAGTAAAATTCGTCATCTTCTGCCAGAAAGACCCAGATCCAAACGGTACCAAAACAATATTCATGAAATTGGGTTTAGGGTTTCCGGATCAGGCATTAAAGGCGCAAGCTTTGTTTTCGTGAAGTCCTTCAATTCCTTTTTTCATGGCTTTATTAAACCACGGACTTGCATTCTGCTGAAGAGATTGTTCAAACGGTCCCGATCGATCCAGAATTTGTAAATTAGGTTTTCGTATGAAGTTCTGGAATCCTCATCTTTTATTCTAAAAAGCATTCTTTTTTGTTATGTTTTGGCATCGTAATTGTTTGCTCTGCGTTAGCGGTTTAAATCGGTTCTGGATCGGTCAAAATCTCTAGTTTATCAAGATTCATGTCCTGAGCTTACTCAATCTCTGAAG_-_ATGGGGTCTAGCACGAGAATTCTTTTGGTGATATTTACATTGTTTATCGCCATATGCCCTGCATTGTGCTCGGTGTGCAGCATAGATCTGGGGTCTGAATCGATGAAAGTTGCAGTGGTGCATCTAAAGCCCGGGCAGAGCCCAATTTCCATAGCGATAAATGAAATGTCGAAGCGGAAAAGCCCTGCCCTCGTGGCATTCAATGGAGGAGACCGCCTGGTCGCCGAAGAAGCCGCCGGGATCTCTGCCCGCTACCCTGATAAGGTCATCGTGCAGGTTAGAGACATGGTTGGTAAATCTTACAACCAGGTTAAAGCTCTTATAGATTCACTATATCTTCCATATGACATAGTTGAAGATTCTAGAGGTGCTGCTGGCATTAGGGTAGATAATGACGGTAAATCAGTTTATACTGTAGAGGAGTTGGTTTCCATGATTTTGAGTTATGGTAGGCATTTGGCGGAGTACCATACCAAAGTCCCTATCAAGGATGCTGTGATTAGCGTGCCACCTTTCTTTGGCCAAGCTGAGAGGAGTGGTATCATTCAAGCAGCTCAGCTTGCTGGCCTCAATGTATTATCTTTGATCAACGAGCATTCTGGTGCAGCTATTCAGTATGGGATTGACAAGGATTTCACAAATGCATCTCGGCATGTTGTGTTTTATGACATGGGTTCTAACAGCGCTTATGCTGCTCTTGTTTATTTCTCTGCATATACGACAAAGGAGCATGGGAAGAGTATTTCGGCTAACCAATTCCAGGTCAAAGATGTCAGATGGAAGGCAAATCTTGGCGGGCAAACTATGGAAATGCGTCTTGTTGAGCATTTTGCTGATGAATTTAATAGGCAAGTTGGGAATGGTATAGATGTGCGGAAATCTCCTAAAGCAATGGCTAAGTTGAAGAAACAAATTAAGCGCACCAAAGAAATCCTTAGTGCTAATAATGAGGCCCCTCTATCAGTTGAATCAATTTATGAGGATCGTGATTTCAGGAGTACCATAACGCGGCAGAAATTTGAAGAGCTTTGTGGGGATCTGTTTGAGGAGGCACTTTTGCCTGTAAAGGAAATTCTTAAGCATTCTGGCTTGAAGGTGGAAGACCTTTATGCTGTAGAGTTGATAGGTGGAGCGACTCGCATGCCGAAATTGCAGGCATTGCTCCAAGAATTTCTTGGCAGAAAAGACTTAGATAAGCATCTTGATGCTGATGAAGCTGTAGTGCTCGGATCAGCACTTCATGCTGCAAATTTGAGTGATGGAATCAAGCTAACCCGCAAGTTAGGAATGATTGATGGTGCAACATATGGTATCATACTTGAATTGAATAGTCCTGAACTAGATAATGAAGAAAGTAATCAACAAGTACTTATCCCAAGGATGAAGAAGCTTCCGAGCAAGGCATTCAAGTCTGTAAAGTATAGCAAGGACTTTGAAGTTTCACTTCAATATGATCCTTCTGATATACTACCACCAGGGATTTCCTCTAACAAAATTGCAACTTACCACGTTTCAGGCTTAACTGATACCTACACAAAGTATGCAACACGAAACCTCTCTGCACCGATAAAGACAAACTTACACTTTTCCCTGAGCAGAAGTGGTGTGGTATCATTTGATCGTGCTGAGACTGTAATAGAAGTTTCAGAATGGGTTGATGTTCCAGTGAAGAATTTAACAGCTGAAAATTCAACCTCAATTTTGTCCAATGCATCATCTGAATCAAGTACAAGTCCAACGAGCTCTAGTGAAAAGGAAGAAGGCAACTTAAAGGGCGAGGGATTTGAGAATAATGCTACAACTCCTGAAAATGTAACTCAAGATTCAAAGCCCGTAACTGAAAAGAAATTGAGAAAAAGAACTTTTAGAGTTCCTCTCAAGGTAATGGATGCTACTGATGGTCCTGGAAGAGCCCTCTCTAAAGAATCATTTGTAGAAGCTGGAGTTAGGCTTTCAGATCTGAATCGGAAAGATGCAGAGAGGAAAAGGACAGCTGAACTTAAAAATAGCCTCGAGGAATACATCTATTCTACTAAAGAAAAGTTGGACTCATCTGAGGACATTGAGAAAGTCTCAACTCAAGAACAGCGTAGCTCCTTCAAAGACAAACTTGACGAGGCTCAAGAATGGTTGTACATGGATGGAGAGGATGCTTCTGCAGATGAATTTGAAAAACACCTTGATTCACTGAAAACAACTGGAGGGGAAATATTTTTCAGATTGAAGGAACTGAGTGCTCGACCTGTAGCGGGTAAATATGTTCGGGAATATCTTGATGGATTGCATAAGACATTAGGTGAATGGGAGAAAACCAAACCTTGGATTGCCTCATCGTATAAAAATGAGATTTTGGATGAAGTGGATAAGATAAAGAAATGGCTTGATGAGAATGAAGCTAAACAGGCCAAAACTCCAGGATACATGGTTCCCATCTTCACATCTGATGAAGTATATGGAAAAGTTGGAAAGCTTCAAGAGAAGGTGCTTAAGATCAGCAATATCCCTAGGCCAAAGCCAAAGGTTGAAAAACCTCCAAAAAATGACTCTGTCAAGGCTGACAACCAAGATGATGGCAGATCCACTTCCAGCAACAGCACAGATAACGAAGCTGCTGGAGAAACGACACGTGAACCAAGTGAATCTGAAGGACACTCACAGGGAGAAAAGATACATGAACCAAGTGAATCTGAAGGACACTCAGAGGGATCAAATGGCGAACAAGATGCCAACGAGGAACCTTTTGATGAACTATGA___AAGGAGCAAGAAATTTCAAAAATATGCAAGACCTACGTACAATTAGGGTGCAGAAATTGTTAGTGAATGTACAGAAAGTGTTTGGCAGGGCTCATGTCACCGTCGATTTTGATAAACATCATTTTTTCCTGTCTTACATTCCGGCAGTAGGCAGTGGGATGCATCCTATGTAACCCACAAATGGTCTCTTTTGTAAACGTACAATATTCGAAAGCAAGACCAGTCTTTTGGTCACTAATACTGGTCAAACATTTATAACATTTCTGATTATATTTTCAGGGAAAAAA

Fln Alignment:

Contig7280___IDLGSESMKVAVVHLKPGQSPISIAINEMSKRKSPALVAFNGGDRLVAEEAAGISARYPDKVIVQVRDMVGKSYNQVKALIDSLYLPYDIVEDSRGAAGIRVDNDGKSV-YTVEELVSMILSYGRHLAEYHTKVPIKDAVISVPPFFGQAERSGIIQAAQLAGLNVLSLINEHSGAAIQYGIDKDFTNAS-RHVVFYDMGSNSAYAALVYFSAYTTKEHGKSISANQFQVKDVRWKANLGGQTMEMRLVEHFADEFNRQVGNGIDVRKSPKAMAKLKKQIKRTKEILSANNEAPLSVESIYEDRDFRSTITRQKFEELCGDLFEEALLPVKEILKHSGLKVEDLYAVELIGGATRMPKLQALLQEFLGRKDLDKHLDADEAVVLGSALHAANLS-DGIKLTRKLGMIDGATYGIILELNSPELDNEESNQQVLIPRMKKLPSK
B8LRY5______________IDLGTTYSCVGVWQ----HDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPTVQNDMKLWPFKVISGPAEKPMIVVSYKGEDKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLL------------TIEEGIFEVKATAGDTHLGGEDFDNRLVNHFTQEFKRKYKK--DLSSSARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVM-------TVLIPRNTTIPTK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
3008	80	20			0.995493
3035	14		85		0.993533
3036	85			14	0.993533
3037		85	14		0.993533
3038		85		14	0.993533
3240	25		75		0.996473
3241	25		75		0.996473
3242			75	25	0.996473
3243	75		25		0.996473
3244		75		25	0.996473
3259		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain