SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7266

Length: 2174 nt

UniGene Fasta

>sp_v3.0_unigene7266
ATGGGGGAACCTGAAAAACAAATTCCTATTCTCTCTGAATTCTCAAATGGAGAGAGATATTCGCGAACATCCTCAGCACATTCATTGGAACAGGGCGTTCTAGATGTTACCGACTACATGTCCCAAAGATGCTCATAAACAACTGATTTTCTGCCAATAACGACCAAGGTGTTTTTGCTCTCGATTTCCCGTGCTTGATGAGCTTCAGTTTATAGAATGTGACACTCCAGATTGCTGAGACGCGATCCTCTCTGCACGCTAAGTTTTCAGGGCAAGAAGAAGAAAAAGGATACGCCATGGGCTCTACAGGCGGTGCCGAGAACAAGGCCAACGATTATTTAACAGCAGGGTGGACAGTCCCTCGAGTGTTTGGGGGAATACTTGTGTCAGCAGCCGTGCTGGGCGTGGTTTTAGCTCCCGATATTCTGTCATCATTCCTTCCCTTCTCCAAGCGCAAAAGCAAGAAGAAGCCCGTGAGAGTGTACATGGATGGCTGCTTCGACATGATGCATTACGGCCACTGCAACGCCCTCAGGCAGGCTCGTGCCCTCGGAGACGAATTGGTCGTCGGCGTCGTCAGTGACGACGAGATAATATACAACAAAGGCCCCCCTGTCATGTCCCTGGACGAAAGGATGGTGATGGTAAGTGCTGTAAAGTGGGTGGATGAGGTTATTGCAAATGCTCCATATGCAATCAATGAAGAATTTATGAACAAATTATTCAATGAGTACAATATTGATTATATTATACATGGAGATGATCCATGTTTACTTCCAGATGGAAGTGATGCTTATGCCCTTGCTAAGAAGGCTGGACGATACAAGCAGATAAAGCGGACTGAAGGTGTATCAAGCACTGATATTGTTGGTCGGATGCTGCTTTGTGTTAGAGACAGACCCAGTAGTGACAATCATACTCATGCTTCTTTACAGCGGCAATTTAGCCATGGGCACAGTCACAAGGCTGAGAGTAGGGGTGCTTCCAGTGGAACTCGAATTTCTCATTTTCTCCCAACATCACGACGCATTGTGCAGTTTTCAAATGGAAAGGGTCCTGGACCAGATGCACGCATTGTCTACATTGATGGTGCATTTGATCTCTTTCATGCTGGACATGTGGAGATTCTAAAACGTGCTCGGGAGCTCGGGGACTTTTTACTTGTTGGTATCCATACAGATCAAACTGTCAGTGACCACAGAGGGCTTCATCATCCTATAATGAATCTCCACGAACGTAGCCTTAGTGTGTTAGCTTGTCGATATGTGGATGAGGTTATAATTGGCGCTCCATGGGAGGTCACAAAAGATATGATTATGACCTTCAATATTTCTTTGGTTGTTCATGGGACGGTTGCTGAGAATGATGGCGTGAATGTGGAAGTCGATCCATACAAAGCTGCAAAATCTATGGGAATATTTAAGATAATAGAGAGTCCATTGGACATAACAACTACCACAATTATCAAAAGAATTGTAGCTAATCATGAAGCTTATCAGAAACGCAATGAGAAAAAAGTGGAAAGCGAGAAGAGGTATTATGAAGGTAAAACACATGTTAGTGGCGATTAAGTCTTTGATCTATGTTCTGCACCTGAAATCTGAAATTTCATGCTGAATAATAATGTCTTTGGCATACATTTAACATCGTGATCCTCCATGATTATGCCTACCCATTTAATGGGTGTATCTTTGGAGTATACATACAATTTGATGCCAGAGGTTTATTTCACTGGGCTCCATTTTGTCTACTTCCTATTATTTGTGTTTGAACCTATATTGCATGGGTATGGCTGGATACGGGTGCGGGTATGGCCACGGATGGAAATGTTTTAAACTATGGAGATCATCAGGATGCGGGCATTACAGGTATGGGGATGAATGGAAGATGATAGAGCACCCATGCAACTAGGGTTTGAACTAATGGCTCATGGTTGTGAACAAATTTTGTTGTGGTTGTATAATTTTTTCGTCCTTTTTATTTAATCTGAAGAGTAACCTCCACAACGTTTAAGTATTGGAGCTCCATAATTGTGTTTTTAGAACTGTTTGTATTGTATTGCAATTTGTCAACAATCTTTTTTTATTTCAGGCAAAGTGGAGTTGTAAATCTGTACTTGATTGTGTTCAATATACGCCTTTTTTGATGACTCAAAGATGGAAATTAATTGTGTT

Ace file of the UniGene sp_v3.0_unigene7266

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ethanolamine-phosphate cytidylyltransferase, putative n=1 Tax=Ricinus communis RepID=B9S1W1_RICCO	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Sma3	Chromosome chr8 scaffold_68, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00033614001;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	0.0	-
Sma3	biosynthetic process	GO:0009058	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G38670.1	PECT1 phosphorylethanolamine cytidylyltransferase 1 chr2:16168979-16171680 FORWARD LENGTH=421	81%
RefSeq	Arabidopsis thaliana	NP_181401.1	ethanolamine-phosphate cytidylyltransferase [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002326258.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEI5

Fln msg: your sequence is longer than subject: 425 - 305

Fln protein: MGSTGGAENKANDYLTAGWTVPRVFGGILVSAAVLGVVLAPDILSSFLPFSKRKSKKKPVRVYMDGCFDMMHYGHCNALRQARALGDELVVGVVSDDEIIYNKGPPVMSLDERMVMVSAVKWVDEVIANAPYAINEEFMNKLFNEYNIDYIIHGDDPCLLPDGSDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRDRPSSDNHTHASLQRQFSHGHSHKAESRGASSGTRISHFLPTSRRIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILKRARELGDFLLVGIHTDQTVSDHRGLHHPIMNLHERSLSVLACRYVDEVIIGAPWEVTKDMIMTFNISLVVHGTVAENDGVNVEVDPYKAAKSMGIFKIIESPLDITTTTIIKRIVANHEAYQKRNEKKVESEKRYYEGKTHVSGD*

Protein Length: 426

Fln nts: ATGGGGGAACCTGAAAAACAAATTCCTATTCTCTCTGAATTCTCAAATGGAGAGAGATATTCGCGAACATCCTCAGCACATTCATTGGAACAGGGCGTTCTAGATGTTACCGACTACATGTCCCAAAGATGCTCATAAACAACTGATTTTCTGCCAATAACGACCAAGGTGTTTTTGCTCTCGATTTCCCGTGCTTGATGAGCTTCAGTTTATAGAATGTGACACTCCAGATTGCTGAGACGCGATCCTCTCTGCACGCTAAGTTTTCAGGGCAAGAAGAAGAAAAAGGATACGCC_-_ATGGGCTCTACAGGCGGTGCCGAGAACAAGGCCAACGATTATTTAACAGCAGGGTGGACAGTCCCTCGAGTGTTTGGGGGAATACTTGTGTCAGCAGCCGTGCTGGGCGTGGTTTTAGCTCCCGATATTCTGTCATCATTCCTTCCCTTCTCCAAGCGCAAAAGCAAGAAGAAGCCCGTGAGAGTGTACATGGATGGCTGCTTCGACATGATGCATTACGGCCACTGCAACGCCCTCAGGCAGGCTCGTGCCCTCGGAGACGAATTGGTCGTCGGCGTCGTCAGTGACGACGAGATAATATACAACAAAGGCCCCCCTGTCATGTCCCTGGACGAAAGGATGGTGATGGTAAGTGCTGTAAAGTGGGTGGATGAGGTTATTGCAAATGCTCCATATGCAATCAATGAAGAATTTATGAACAAATTATTCAATGAGTACAATATTGATTATATTATACATGGAGATGATCCATGTTTACTTCCAGATGGAAGTGATGCTTATGCCCTTGCTAAGAAGGCTGGACGATACAAGCAGATAAAGCGGACTGAAGGTGTATCAAGCACTGATATTGTTGGTCGGATGCTGCTTTGTGTTAGAGACAGACCCAGTAGTGACAATCATACTCATGCTTCTTTACAGCGGCAATTTAGCCATGGGCACAGTCACAAGGCTGAGAGTAGGGGTGCTTCCAGTGGAACTCGAATTTCTCATTTTCTCCCAACATCACGACGCATTGTGCAGTTTTCAAATGGAAAGGGTCCTGGACCAGATGCACGCATTGTCTACATTGATGGTGCATTTGATCTCTTTCATGCTGGACATGTGGAGATTCTAAAACGTGCTCGGGAGCTCGGGGACTTTTTACTTGTTGGTATCCATACAGATCAAACTGTCAGTGACCACAGAGGGCTTCATCATCCTATAATGAATCTCCACGAACGTAGCCTTAGTGTGTTAGCTTGTCGATATGTGGATGAGGTTATAATTGGCGCTCCATGGGAGGTCACAAAAGATATGATTATGACCTTCAATATTTCTTTGGTTGTTCATGGGACGGTTGCTGAGAATGATGGCGTGAATGTGGAAGTCGATCCATACAAAGCTGCAAAATCTATGGGAATATTTAAGATAATAGAGAGTCCATTGGACATAACAACTACCACAATTATCAAAAGAATTGTAGCTAATCATGAAGCTTATCAGAAACGCAATGAGAAAAAAGTGGAAAGCGAGAAGAGGTATTATGAAGGTAAAACACATGTTAGTGGCGATTAA___GTCTTTGATCTATGTTCTGCACCTGAAATCTGAAATTTCATGCTGAATAATAATGTCTTTGGCATACATTTAACATCGTGATCCTCCATGATTATGCCTACCCATTTAATGGGTGTATCTTTGGAGTATACATACAATTTGATGCCAGAGGTTTATTTCACTGGGCTCCATTTTGTCTACTTCCTATTATTTGTGTTTGAACCTATATTGCATGGGTATGGCTGGATACGGGTGCGGGTATGGCCACGGATGGAAATGTTTTAAACTATGGAGATCATCAGGATGCGGGCATTACAGGTATGGGGATGAATGGAAGATGATAGAGCACCCATGCAACTAGGGTTTGAACTAATGGCTCATGGTTGTGAACAAATTTTGTTGTGGTTGTATAATTTTTTCGTCCTTTTTATTTAATCTGAAGAGTAACCTCCACAACGTTTAAGTATTGGAGCTCCATAATTGTGTTTTTAGAACTGTTTGTATTGTATTGCAATTTGTCAACAATCTTTTTTTATTTCAGGCAAAGTGGAGTTGTAAATCTGTACTTGATTGTGTTCAATATACGCCTTTTTTGATGACTCAAAGATGGAAATTAATTGTGTT

Fln Alignment:

Contig7266___YMDGCFDMMHYGHCNALRQARAL--GDELVVGVVSDDEIIYNKGPPVMSLDERMVMVSAVKWVDEVIANAPYAINEEFMNKLFNEYNIDYIIHGDDPCLLPD----GSDAYALAKKAGRYKQIKRTEGVSSTDIVGRML
D5AEI5______________YADGIYDLFHFGHARALEQAKKAFPNTYLLVGCCNDAVTHMYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVITPEFIDK----YQIDYVAH--DPLPYADASGAGKDVYEYVKSIGKFKETKRTEGISTSDIIMRIL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
425	85			14	0.993533
516	85		14		0.993533
597		20		80	0.995493
696		66	33		0.997452
697	66		33		0.997452
980			80	20	0.995493
981			80	20	0.995493
983	20		80		0.995493
1142		83		16	0.994512
1193	87		12		0.992554
1200	62		37		1.0
1240		87		12	0.992554
1278	12			87	0.992554
1279		12		87	0.992554
1282	85			14	0.993533
1387		87		12	0.992554
1426		12	87		0.992554
1429	87			12	0.992554
1487		80		20	0.995493
1503	66		33		0.997452
1504	66		33		0.997452
1505		66		33	0.997452
1507		66	33		0.997452
1511			66	33	0.997452
1512	66			33	0.997452
1636		88	11		0.923564
1934		62	37		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain