SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7263

Length: 1493 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7263

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative inositol transporter 2 [Arabidopsis thaliana] sp\|Q9C757.1\|INT2_ARATH RecName: Full=Probable inositol transporter 2 gb\|AAG50560.1\|AC073506_2 hypothetical protein [Arabidopsis thaliana] gb\|AAL67029.1\| unknown protein [Arabidopsis thaliana] gb\|AAM67	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Sugar transporter, putative	-	-	3.117e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	8.669e-10	-

Source	Gene names
Sma3	At1g30220; At2g35740; At2g43330; At4g16480; B1364A02.4; F12P21.2; FCAALL.375; GSVIVT00001923001; GSVIVT00012471001; GSVIVT00028332001; INT1; INT2; INT3; INT4; Itr1; Itr2; Itr3; MtrDRAFT_AC151520g15v2; MtrDRAFT_AC152184g3v2; OJ1048_C10.5; OSIGBa0130B08.11;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	myo-inositol:hydrogen symporter activity	GO:0005366	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	myo-inositol transport	GO:0015798	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	Plexin/semaphorin/integrin	IPR003659	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30220.1	ATINT2, INT2 inositol transporter 2 chr1:10632957-10635439 REVERSE LENGTH=580	51%
RefSeq	Arabidopsis thaliana	NP_174313.1	putative inositol transporter 2 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002322517.1	predicted protein, partial [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLI2

Fln msg: your sequence is shorter than subject: 409 - 589

Fln protein: YARCCWRACCGSDGLVLYLPESPRWLYRQNKIDEAVAILERLYPKEDVGAEVTALRDSIAAEDDTNTTWTKIRTLIKSPELRPAVVAGVGLSVLQQFVGINTVMYYSPTIVQLAGFASNTTALLLSLITSGLNAVGSLLGMYLIDRTGRRMLAIVSLSGVILTLAMLTGAFHYTETHSPPVLTSSRTLGTESAYVCPAFQTSSQHWTCAQCLDNSCGFCQSPMSRKGHYTGTCLVSNSTVQHMCHRLRHSGSSWFTRGCPSQFGWLAVLGMALYICFFAPGMGIVPWTVNSEIYPLKYRGMGGGLAATCLWISNLIVSETFLTLTSAIGVAKTFMIFMFIACFTLVFVILFVPETKSMSLEQLEEMLHDLYMEKKKGNRWSSLCYILKKRDKGQKADKGQKAEPDEDI*

Protein Length: 410

Fln nts: GGTATGCTCGGTGTTGCTGGCGTGCCTGCTGTGGTTCAGATGGTTTGGTGTTATATTTACCCGAATCTCCCCGCTGGTTATACAGACAGAACAAGATTGATGAAGCAGTGGCCATTCTTGAAAGGCTCTATCCAAAGGAAGATGTGGGGGCTGAGGTTACAGCTCTAAGGGATTCCATTGCCGCAGAAGATGATACAAATACAACGTGGACTAAAATTCGCACATTGATAAAATCACCTGAACTTCGACCAGCTGTGGTGGCAGGCGTTGGGCTTTCGGTCCTTCAACAGTTTGTAGGGATAAACACTGTAATGTATTACAGTCCCACAATTGTTCAACTGGCGGGCTTCGCGTCGAACACAACAGCTCTGCTCCTATCGCTGATAACATCAGGACTGAATGCAGTGGGATCCTTATTGGGAATGTACCTCATTGACAGAACAGGAAGGAGGATGCTTGCAATCGTGAGTTTAAGTGGAGTTATCCTGACACTTGCAATGCTCACAGGTGCATTCCATTACACAGAAACTCACTCTCCTCCTGTACTTACCTCATCGAGAACCTTGGGTACAGAAAGTGCCTATGTTTGCCCAGCTTTTCAAACTTCAAGTCAGCATTGGACCTGTGCTCAGTGCCTGGACAACAGCTGTGGATTCTGTCAATCACCAATGTCACGCAAGGGTCACTATACTGGAACCTGCCTGGTGTCCAATTCAACTGTGCAACATATGTGCCACAGACTGCGCCATTCTGGCAGCTCTTGGTTCACTCGGGGATGCCCCAGTCAGTTCGGTTGGCTTGCCGTATTGGGAATGGCTCTCTACATTTGCTTCTTTGCGCCTGGCATGGGAATCGTACCCTGGACAGTGAACTCAGAGATCTACCCTCTTAAATACAGAGGTATGGGCGGAGGACTTGCAGCTACCTGTCTGTGGATCTCCAATCTGATCGTGTCTGAGACGTTCTTGACCCTTACCTCTGCCATCGGTGTCGCCAAAACATTTATGATTTTCATGTTCATAGCGTGTTTTACCTTGGTGTTTGTCATCCTGTTTGTGCCAGAGACGAAGAGCATGTCACTGGAGCAGCTTGAGGAGATGTTGCACGATCTCTATATGGAAAAGAAGAAGGGCAACCGATGGAGCTCTCTCTGTTACATTCTGAAAAAACGCGATAAGGGCCAAAAAGCGGATAAGGGCCAAAAAGCGGAGCCTGATGAAGATATTTAG___AGTGTTTGATTATATAGCTAGCTGTGCTGCACTGCACAAAAGTAGTTGCACGTTTTATGATCTGTTTGACTTTGGTTTTGACAACAAACCAAATTAATACATATTCAATTTAAATTAAATTATATGAATGGTTTACAGGTGTAAATATCTGTTAAGTTCAGCTATTCAAGTAATAATTAATAGGAAAGTTTATTATAAGAGTTTGTGGTTTATGTTCTTTTAAATTGACTGGCACGATCAGAGAGAATGGAACACATATTGTGG

Fln Alignment:

Contig7263___LVLYLPESPRWLYRQNKIDEAVAILERLYPKEDVGAEVTALRDSIAAEDDTNTTWTKIR--TLIKSPELRPAVVAGVGLSVLQQFVGINTVMYYSPTIVQLAGFASNTTALLLSLITSGLNAVGSLLGMYLIDRTGRRMLAIVSLSGVILTLAMLTGAFHYTETHSPPVLTSSRTLGTESAYVCPAFQTSSQHWTCAQCL--DNSCGFCQSPMSRKGHYTGTCLVSNSTVQHMCHRLRHSGSSWFTRGCPSQFGWLAVLGMALYICFFAPGMGIVPWTVNSEIYPLKYRGMGGGLAATCLWISNLIVSETFLTLTSAIGVAKTFMIFMFIACFTLVFVILFVPETKSMSLEQLEEMLHD
B8LLI2______________LMLTLPESPRWLYRKKGEAEAVAVLKRIYSPDEVEEEIQSLKESVETEVQELGTTDKVRYWQLWTTKEIRYALFVGVGLQVFQQFVGINTVMYYSPTIVQLAGYASNQTALLLSLITSGLNATGSIASIYLIDKAGRKKLVIFSLCGCIVALGMLAGVFYQTTHHSP--LVSMAATQHYSNYTCPDYATAPGIWDCTRCLKANPDCGFCAAAGNQL--LPGACLIANSTTKDLCNKFDHR--PWFTRGCPSRLGFLAIVGLALYIIFFSPGMGTVPWVVNSEIYPLKFRGLCGGIAATACWISNLIVAQTFLTLTVAIGTSDTFLLFGCIAVAGLFFTLVFMPETKGLSFEQVEVMLQE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
786		25	75		0.996473
1209		87		12	0.992554
1210	25		75		1.0
1328	75		25		0.996473
1363		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain