SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7251

Length: 2821 nt

UniGene Fasta

>sp_v3.0_unigene7251
ACACAGCGCTGGAACAGAAAAGCCCAAGACAGGGCAGATACACAAGAGATAGATATTTGTATATAGGTGGGTATGCCTGTGCCATGCACAATGAATGGACCAAGGATCACATCAATGGATTCTGCACATGGGTATGGACTGGTCATGCAGAGAGGGGCAGATGATGGGAACCCCGGTCTTGATTCACAGCTATGGCATGCCTGTGCAGGAGGAATGGTGCAGATGCCCTCTGTGAATACTCGAGTTTACTATTTTCCACAAGGGCAGGCTGAGCACTCAGCCACAAATGTGGAATTCCCAGCAAGTCTCAGGGTCAAGCCTGCAATACTGTGCAGGGTGCTCAATGTCAAATTCATGGCGGACACAGAGACTGACGAGGTATATTCTCGGATCCGCCTGGTGCCTATTAAGCCCAACGAGGCTGCTATGGAGGACTGCAGTGAGGATAATGATAATGCTGCTGCAAATGAGAAGCCAGTCTCGTTTGCAAAGACATTGACACAGTCGGATGCCAATAATGGTGGTGGCTTCAGCGTGCCGAGGTACTGTGCAGAAACTATTTTTCCAAGGCTGGATTACTCAAGTGACCCTCCTGTGCAGACTGTTCTTGCGAAGGATGTCCATGGAGAAGTTTGGAAGTTCAGGCATATATACCGTGGCACACCGCGGAGGCATTTGTTGACAACTGGGTGGAGTACTTTTGTGAACCAGAAGAAGCTTGTGGCAGGTGATTCAATCGTATTTTTGAGGAGCCTCAATGGGGAACTGTGTGTGGGGATCAGGAGATCCACCAGGAGTACTGGTGGAGGGGACTCATCGGCCTGGCATCTGGCAGGTCAGCAGCAGCAACATGGAAGCTGTATGTCTCCTTATAGGAGTAGTTCCAGGTGGGAGGTCAAGGGGGGTGATAATTTCTCTGCTGCTTTTTTCGGTGGTGGCGATAAGGCTAGTGCCAATGGGAATTCCAATGGGTTTGCAAGGAATAAGGGCAAAGTGAGCGCCAAATCTGTCATCGAGTCTGCCACTTTGGCTGCCACCGGGCAACCCTTTGAAGTTGTGTATTACCCCAGGGCCAGTACCCCTGAGTTCTGTGTCAAGGCAAATGCTGTGGATGCTGCATTGCGGATGAAGTGGACTGCAGGGATGCGCTTTAAGATGGCCTTTGAGACTGAGGATTCCTCAAGAATCAGTTGGTTCATGGGCACCATTTCTTTGGTGCAATGTGCAGACCCAATTCACTGGCCTACTTCACCATGGCGACTTTTACAGGTAACATGGGATGAGCCAGATTTATTACAGAATGTGAAGCGAGTGAGTCCATGGCTGGTTGAAGTTGTTTCCAATGTGCCTCCCATCCAATTGTCACCTTTCACGTTACCCAAGAAGAAGCTCCGAGTGAGTCAACATCCAGAGTTTCAGTTTGAGGGGCATGGAATCATGGGAGGACTTCAAATGGCTACACTTACTAATAATGTGCTAGGGCAGATTAACCCTTGGCACGGTCTTTCAGAAAATGTTCCTGCAGGCATGCAGGGAGCCAGGCATGGTCATATTTATGGGGTTTCTTTGTCAGATTTTCATTCAAACAAACTGCAATCTGGGTTGTCATTAGATAGTTTCCACCAGCTAGAGCAAGGAGCACTCTCATCAACCCCTGTTTCCACAGACCTCAACATTGGTTGTTTCTCCCAGCTTGAGCGCTCTAGTGTACAGGACAACCTATCTTGTGTTTTAACAATGGGAAACTCATCGCAAAGCGAACAGAAAGCAACTAAGGGGAGGTCCACTAGCTCAACCACAAAGAGTGCACCCTTTCTGCTGTTTGGGAAACCTATTCACACTGAACAGTCTCCCAAATCTGAACAGCAACAGCAATCAGGAGTGAGCTCTTCAGATGGTCCAGGTTTTCATGTGGTGAATGACTCTGGTTCACCTGGGCTTACAAGCAACAGCTCAACAGATGGAAATCCAGAAGTTGTAGACAGATTACAAAGGGCAATGGCCGGTAGATCAGATACATCCAAACTCTCTGAAAATTATGGCTTAAGGCTTTATTGTGGGGAGACATTGGACTCTACAGTTAACAATGGTGGTGGTAACCTTTCATGGTTTAAAGATCGTCAAGTTTCTTTACAGACCTTGGAGAATGGCAGTGGAGGAAAGACATCTGAAGATGGTGTTATACATTGCAAAGCATTCTTGGAGTCTGAAGATGTTGGTCGGACCCTAGATCTATCACTGTTCAGTAGCTATGAAGAGCTCCACAACAAGCTAGCCAAGATGTTTGGCATAGAAGATTCAGATCTATCAAACCGTGTTCTTTACAAAGATGCAGCTGGTGTTGGAAGGCACACGGGGGAACAACCATATGGGGATTTTATGAAGACTGTAAGGAGGCTTACAATCTTGTCTGATTCCAGCAGTGACAACATGGGCAGATGACAAGATCAGCTTTTAAAGTTGCATGCCTGATTCTTCTACAACCTGGTCGGCATGAAACTCCAAAGATGTCTTAGACTTTTGACAGTCTCTGCTCATGGCAGATTCTATTTTGTTATTTGATATAAAATATCAAGATGGAATGATGGAAATTTTTGCAAAATATATTTTCCTGAATAATCCAATTTCTGATTAGCTGTACAGTGAATGCCTTCCAAAGTGTTAGAATTTTTTGCTATTGTTTTTTATTGACATTGCTACCTTTAGAGGAAATTGGATATCCTCTGTCAATTTTCTTTCAATGATATATTCAAATTTCTCAAATCATTCAGAAGTCTGTACAGTTGGAAGAATGAAATTACATGCTGGGTTTTAATTGTTT

Ace file of the UniGene sp_v3.0_unigene7251

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative auxin response factor 10/16/17 (Fragment) n=1 Tax=Cycas rumphii RepID=E1UHY1_CYCRU	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Auxin response factor, putative	-	-	5.499e-15	-

Source	Gene names
Sma3	ARF1; ARF10; ARF16; ARF18; ARF2; ARF22; ARF23; ARF3; ARF8; AT4G23980; At2g28350; At4g30080; At5g62000; B1469H02.12; F6G3.110; GSVIVT00006185001; GSVIVT00018183001; GSVIVT00023198001; GSVIVT00024547001; GSVIVT00031984001; LOC_Os02g41800; LOC_Os06g47150; LO

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	pattern specification process	GO:0007389	Biological Process	-
Sma3	negative regulation of cell proliferation	GO:0008285	Biological Process	-
Sma3	response to hormone stimulus	GO:0009725	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	response to carbohydrate stimulus	GO:0009743	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3	fruit dehiscence	GO:0010047	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3	fruit development	GO:0010154	Biological Process	-
Sma3	floral organ abscission	GO:0010227	Biological Process	-
Sma3	regulation of anthocyanin biosynthetic process	GO:0031540	Biological Process	-
Sma3	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	petal development	GO:0048441	Biological Process	-
Sma3	sepal development	GO:0048442	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-
Sma3	developmental growth	GO:0048589	Biological Process	-
Sma3	root cap development	GO:0048829	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30080.1	ARF16 auxin response factor 16 chr4:14703369-14705564 REVERSE LENGTH=670	57%
RefSeq	Arabidopsis thaliana	NP_567841.1	auxin response factor 16 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002316370.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A843

Fln msg: your sequence is longer than subject: 790 - 264

Fln protein: MPVPCTMNGPRITSMDSAHGYGLVMQRGADDGNPGLDSQLWHACAGGMVQMPSVNTRVYYFPQGQAEHSATNVEFPASLRVKPAILCRVLNVKFMADTETDEVYSRIRLVPIKPNEAAMEDCSEDNDNAAANEKPVSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSSDPPVQTVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSLNGELCVGIRRSTRSTGGGDSSAWHLAGQQQQHGSCMSPYRSSSRWEVKGGDNFSAAFFGGGDKASANGNSNGFARNKGKVSAKSVIESATLAATGQPFEVVYYPRASTPEFCVKANAVDAALRMKWTAGMRFKMAFETEDSSRISWFMGTISLVQCADPIHWPTSPWRLLQVTWDEPDLLQNVKRVSPWLVEVVSNVPPIQLSPFTLPKKKLRVSQHPEFQFEGHGIMGGLQMATLTNNVLGQINPWHGLSENVPAGMQGARHGHIYGVSLSDFHSNKLQSGLSLDSFHQLEQGALSSTPVSTDLNIGCFSQLERSSVQDNLSCVLTMGNSSQSEQKATKGRSTSSTTKSAPFLLFGKPIHTEQSPKSEQQQQSGVSSSDGPGFHVVNDSGSPGLTSNSSTDGNPEVVDRLQRAMAGRSDTSKLSENYGLRLYCGETLDSTVNNGGGNLSWFKDRQVSLQTLENGSGGKTSEDGVIHCKAFLESEDVGRTLDLSLFSSYEELHNKLAKMFGIEDSDLSNRVLYKDAAGVGRHTGEQPYGDFMKTVRRLTILSDSSSDNMGR*

Protein Length: 791

Fln nts: ACACAGCGCTGGAACAGAAAAGCCCAAGACAGGGCAGATACACAAGAGATAGATATTTGTATATAGGTGGGT_-_ATGCCTGTGCCATGCACAATGAATGGACCAAGGATCACATCAATGGATTCTGCACATGGGTATGGACTGGTCATGCAGAGAGGGGCAGATGATGGGAACCCCGGTCTTGATTCACAGCTATGGCATGCCTGTGCAGGAGGAATGGTGCAGATGCCCTCTGTGAATACTCGAGTTTACTATTTTCCACAAGGGCAGGCTGAGCACTCAGCCACAAATGTGGAATTCCCAGCAAGTCTCAGGGTCAAGCCTGCAATACTGTGCAGGGTGCTCAATGTCAAATTCATGGCGGACACAGAGACTGACGAGGTATATTCTCGGATCCGCCTGGTGCCTATTAAGCCCAACGAGGCTGCTATGGAGGACTGCAGTGAGGATAATGATAATGCTGCTGCAAATGAGAAGCCAGTCTCGTTTGCAAAGACATTGACACAGTCGGATGCCAATAATGGTGGTGGCTTCAGCGTGCCGAGGTACTGTGCAGAAACTATTTTTCCAAGGCTGGATTACTCAAGTGACCCTCCTGTGCAGACTGTTCTTGCGAAGGATGTCCATGGAGAAGTTTGGAAGTTCAGGCATATATACCGTGGCACACCGCGGAGGCATTTGTTGACAACTGGGTGGAGTACTTTTGTGAACCAGAAGAAGCTTGTGGCAGGTGATTCAATCGTATTTTTGAGGAGCCTCAATGGGGAACTGTGTGTGGGGATCAGGAGATCCACCAGGAGTACTGGTGGAGGGGACTCATCGGCCTGGCATCTGGCAGGTCAGCAGCAGCAACATGGAAGCTGTATGTCTCCTTATAGGAGTAGTTCCAGGTGGGAGGTCAAGGGGGGTGATAATTTCTCTGCTGCTTTTTTCGGTGGTGGCGATAAGGCTAGTGCCAATGGGAATTCCAATGGGTTTGCAAGGAATAAGGGCAAAGTGAGCGCCAAATCTGTCATCGAGTCTGCCACTTTGGCTGCCACCGGGCAACCCTTTGAAGTTGTGTATTACCCCAGGGCCAGTACCCCTGAGTTCTGTGTCAAGGCAAATGCTGTGGATGCTGCATTGCGGATGAAGTGGACTGCAGGGATGCGCTTTAAGATGGCCTTTGAGACTGAGGATTCCTCAAGAATCAGTTGGTTCATGGGCACCATTTCTTTGGTGCAATGTGCAGACCCAATTCACTGGCCTACTTCACCATGGCGACTTTTACAGGTAACATGGGATGAGCCAGATTTATTACAGAATGTGAAGCGAGTGAGTCCATGGCTGGTTGAAGTTGTTTCCAATGTGCCTCCCATCCAATTGTCACCTTTCACGTTACCCAAGAAGAAGCTCCGAGTGAGTCAACATCCAGAGTTTCAGTTTGAGGGGCATGGAATCATGGGAGGACTTCAAATGGCTACACTTACTAATAATGTGCTAGGGCAGATTAACCCTTGGCACGGTCTTTCAGAAAATGTTCCTGCAGGCATGCAGGGAGCCAGGCATGGTCATATTTATGGGGTTTCTTTGTCAGATTTTCATTCAAACAAACTGCAATCTGGGTTGTCATTAGATAGTTTCCACCAGCTAGAGCAAGGAGCACTCTCATCAACCCCTGTTTCCACAGACCTCAACATTGGTTGTTTCTCCCAGCTTGAGCGCTCTAGTGTACAGGACAACCTATCTTGTGTTTTAACAATGGGAAACTCATCGCAAAGCGAACAGAAAGCAACTAAGGGGAGGTCCACTAGCTCAACCACAAAGAGTGCACCCTTTCTGCTGTTTGGGAAACCTATTCACACTGAACAGTCTCCCAAATCTGAACAGCAACAGCAATCAGGAGTGAGCTCTTCAGATGGTCCAGGTTTTCATGTGGTGAATGACTCTGGTTCACCTGGGCTTACAAGCAACAGCTCAACAGATGGAAATCCAGAAGTTGTAGACAGATTACAAAGGGCAATGGCCGGTAGATCAGATACATCCAAACTCTCTGAAAATTATGGCTTAAGGCTTTATTGTGGGGAGACATTGGACTCTACAGTTAACAATGGTGGTGGTAACCTTTCATGGTTTAAAGATCGTCAAGTTTCTTTACAGACCTTGGAGAATGGCAGTGGAGGAAAGACATCTGAAGATGGTGTTATACATTGCAAAGCATTCTTGGAGTCTGAAGATGTTGGTCGGACCCTAGATCTATCACTGTTCAGTAGCTATGAAGAGCTCCACAACAAGCTAGCCAAGATGTTTGGCATAGAAGATTCAGATCTATCAAACCGTGTTCTTTACAAAGATGCAGCTGGTGTTGGAAGGCACACGGGGGAACAACCATATGGGGATTTTATGAAGACTGTAAGGAGGCTTACAATCTTGTCTGATTCCAGCAGTGACAACATGGGCAGATGA___CAAGATCAGCTTTTAAAGTTGCATGCCTGATTCTTCTACAACCTGGTCGGCATGAAACTCCAAAGATGTCTTAGACTTTTGACAGTCTCTGCTCATGGCAGATTCTATTTTGTTATTTGATATAAAATATCAAGATGGAATGATGGAAATTTTTGCAAAATATATTTTCCTGAATAATCCAATTTCTGATTAGCTGTACAGTGAATGCCTTCCAAAGTGTTAGAATTTTTTGCTATTGTTTTTTATTGACATTGCTACCTTTAGAGGAAATTGGATATCCTCTGTCAATTTTCTTTCAATGATATATTCAAATTTCTCAAATCATTCAGAAGTCTGTACAGTTGGAAGAATGAAATTACATGCTGGGTTTTAATTGTTT

Fln Alignment:

Contig7251___STPVSTDLNIGCFSQLERSSVQDNLSCVLTMGNSSQSEQXXXXXXXXXXXXXXAPFLLFGKPIHTXXXXXXXXXXXXXXXXXDGPGFHVVNDSGSPGLTSNSSTDGNPEVVDRLQRAMAGRSDTSKLSENYGLRLYCGETLDSTVNNGGGNLSWFKDRQVSLQTLENGSGGKTSEDGVIHCKAFLESEDVGRTLDLSLFSSYEELHNKLAKMFGIEDSDLSNRVLYKDAAGVGRHTGEQPYGDFMKTVRRLTILSDSSSDNMGR
D5A843______________STPVCTELNIGNSPQNDGSGMQSSPSSLLTVGNSSQNEQKTSSGSASSSTPKGSSFFLFGKPIHTAQSPKSYQQHQSGLSSSDGAAFHMFTENGSPGQSSNTSSNGNQEALERVQKLITGGRDGTKLSENYGLRLSHGESLDYAGTKGVRSLQWFKD-QASILKLEKDKQENTCEDSIVHCKVFKETEEVGRTLDLSLFCTYEQLYDRLAKMFGIEESELSNRVLYKGLGGSVRHAGDEPYKDFMKTVRRLTILSDSGSDNMAR

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
1174	85			14	0.993533
1175		14	85		0.993533
1177	85			14	0.993533
1178			14	85	0.993533
1179	14			85	0.993533
1183		85		14	0.993533
1184	85		14		0.993533
1185	85		14		0.993533
1186		14	85		0.993533
1187	85			14	0.993533
1188	85		14		0.993533
1192		14	85		0.993533
1194		14		85	0.993533
1195	16		83		0.994512
1198		16		83	0.994512
1377		40		60	1.0
1412	60		40		1.0
1551		66		33	0.997452
1552	66	33			0.997452
1553			33	66	0.997452
1555		33		66	0.997452
1578	33			66	0.997452
1633	66		33		0.997452
2202		2		97	0.971188
2238		2		97	0.967822
2280	96		3		0.999965
2375	11		88		0.923564
2376		11	88		0.923564
2384	12		87		0.992554
2515			10	89	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain