SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7243

Length: 1981 nt

UniGene Fasta

>sp_v3.0_unigene7243
AACCCCAAGATTATAATAACAATGGCATGCCCTTTCTCTTGACACCCAAGAACACGAACACCCCGACAGCTGGTGCTAAACGTGTTTTCTCAGACGCTATAGGGGTGGCTCAGGTGGTCAGAAGCGCCCTCAACATGCCAAATGAAGGCAGCAGAATGGGCCTTCTGATGCCTGCAACCAATGCCAAAAGTGAAGTGGACTCCAAGGTTTCAAGCCAACAACCTCAACATCAGAATCAGCATCATCATCAGCATCAGCCCCCCCTTCCTCTCATGTATCCCTGGGCTAATGCTGTGCAAGTGCCCAACACTTGGCAGGTGAGCCTAGAGCAGCAACAACAGCAGCACAGAGGGAGTTTTGGGGCATTTCCTACTCAGGCAGCAGCCAGAGTTATGGTGGGCAACGTGATGGCAGCAGCGGCAGGGAGTATTACCCTCAACGAGGCTCCACATGGAATCCCATCCGAATCTCGTGCAAAATCTTCGCAGGACAGCGTCTCAGCTTCAGCCATGAGGCCACCAATGCCACCTCCTGCCCCCTCTGAACGGCAGCAGAAGAATCCCACTGGCAACGAAGCTCTAACTCCTCCATCTAACGGCAACGGCAACTCTGCTGCATCAAGAGTTGCCCCAGTCGTAGGATGGCCTCCCATTCGGTCATTCAGGAAGAATTTGGCACCTCAGCCCAAGCCTGATATTGAAGACCCAACTGATGCTTCTGGTAACTCTTATGCTTCTACCGATCCTGGACAGACCTTCGGAGATTCCATGTTTGTGAAGGTGAACATGGATGGTGTGCCCATTGGGAGAAAGATCGATCTCAAAGCCTATGATAGCTACGATAAATTGTCCCAAGCTCTTGAAGAAATGTTCAAACGCTTCATCAATGTGCAGGGCAGTGGGCAGAGACAACCTACCAATCCATCGTCTAAAAATGATCAGCCTACTCTATTAAGTGGAACCGATTATGTTCTCACTTATGAAGATAATGAAGGGGATCGTATGCTGGTTGGAGACGTACCTTGGGACATGTTTGTGAGTACAGTGAAGAGGCTGCGTATCATGAAGAGCTCAGAAGCACGGGGATTAGCACCGAGGCATCCTCTGAAGCCACAGGGTCAAGTGACCCAGTGACTAATGATTGAAAGCTCCAGTAAAGGGATCCCAAATGGAGGAGATCCCATTAGCAGCAGTGAAGGTTGGGGTGGTTTAAAGTGTGCGGGAAGGTAGGCAAGTTTTCATCAGGAATTGAAGAATTTTTTCTTGATGGTGGGGTGTAAAATACGATTTGAATATAATGTCAGTAAGAGTATCCAGAGAGGTATTCTCTTGCATGCATCATGACTTAATGGTTGTGTTGTATTATTTCGGCAGTTTTCTTCGAAGGCATACAAGAAATGCCTGTCTTCTCTCTTGGGATGTGCTGGAGGCATTGCCTTGTGACTCCAAGCACCTTCCGGATATTGCGTGGCTTCCTATTCTGAAACATGAACATAGACTAGGTTTTTTCTTCCTTTTTCTCTTTTGTTAACTGACATGGGGAATGTTTCCCATCTCTGTACTTTGAGGAACTGACCTCATGTTGTTTGTATATTTATTTGTATGAACTATTAAAATATGGTTTGAAGTTCTTTCCAATTGCAAAGGTGATTTCACAATGTTTCTTTGTGAGAACAGCTCCAATGTGGGTTTTCTTTGTATGTGCTTTGGATGGGTCACGTGTGCTGATTGTGGCATTGCCATTGACATGTAGAGCTTCAGGATTGTGCTTGGAAGGGTTTTGTCCAGCACATATTTCAGGTTGGATAGCTGGGGTCTCGGAGAATTAAAATGATTTGACTATTTTCTCTGCTTGGAAAATTCAAGTTGCCAACAGTTGTGTATAGCAAGTGCAGTCTTGTAAATCTGGTAGTAATGAGGTGCTGCTTGGCAGCTATGGACTTTCTGTACCTGTGGGTTACTTTTTCATTTATTTAACATTA

Ace file of the UniGene sp_v3.0_unigene7243

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Auxin-responsive protein IAA7 n=1 Tax=Picea abies RepID=B2KZF8_PICAB	-	-	3.00004e-41	42%
FL-Next	sp=Auxin-responsive protein IAA16; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Sma3	Aux/IAA protein	-	-	1.878e-13	-

Source	Gene names
Sma3	AUX28; AXR3; At1g04250; At1g51950; At2g22670; At3g04730; At3g16500; At4g14550; At4g28640; At4g29080; At5g65670; BcAuxR; CsIAA2; F19B15.110; F19P19.31; F7O18.22; FCAALL.254; GH1; GSVIVT00007456001; GSVIVT00013515001; GSVIVT00015048001; GSVIVT00020121001; G

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nitrogen regulatory protein P-II, urydylation site	IPR002332	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04730.1	IAA16 indoleacetic acid-induced protein 16 chr3:1288993-1290415 REVERSE LENGTH=236	2.0e-40	53%
RefSeq	Arabidopsis thaliana	NP_187124.1	auxin-responsive protein IAA16 [Arabidopsis thaliana]	3.0e-40	53%
RefSeq	Populus trichocarpa	XP_002303315.1	predicted protein [Populus trichocarpa]	1.99965e-42	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O24407

Fln msg: your sequence is longer than subject: 369 - 236

Fln protein: MPFLLTPKNTNTPTAGAKRVFSDAIGVAQVVRSALNMPNEGSRMGLLMPATNAKSEVDSKVSSQQPQHQNQHHHQHQPPLPLMYPWANAVQVPNTWQVSLEQQQQQHRGSFGAFPTQAAARVMVGNVMAAAAGSITLNEAPHGIPSESRAKSSQDSVSASAMRPPMPPPAPSERQQKNPTGNEALTPPSNGNGNSAASRVAPVVGWPPIRSFRKNLAPQPKPDIEDPTDASGNSYASTDPGQTFGDSMFVKVNMDGVPIGRKIDLKAYDSYDKLSQALEEMFKRFINVQGSGQRQPTNPSSKNDQPTLLSGTDYVLTYEDNEGDRMLVGDVPWDMFVSTVKRLRIMKSSEARGLAPRHPLKPQGQVTQ*

Protein Length: 370

Fln nts: AACCCCAAGATTATAATAACAATGGC_-_ATGCCCTTTCTCTTGACACCCAAGAACACGAACACCCCGACAGCTGGTGCTAAACGTGTTTTCTCAGACGCTATAGGGGTGGCTCAGGTGGTCAGAAGCGCCCTCAACATGCCAAATGAAGGCAGCAGAATGGGCCTTCTGATGCCTGCAACCAATGCCAAAAGTGAAGTGGACTCCAAGGTTTCAAGCCAACAACCTCAACATCAGAATCAGCATCATCATCAGCATCAGCCCCCCCTTCCTCTCATGTATCCCTGGGCTAATGCTGTGCAAGTGCCCAACACTTGGCAGGTGAGCCTAGAGCAGCAACAACAGCAGCACAGAGGGAGTTTTGGGGCATTTCCTACTCAGGCAGCAGCCAGAGTTATGGTGGGCAACGTGATGGCAGCAGCGGCAGGGAGTATTACCCTCAACGAGGCTCCACATGGAATCCCATCCGAATCTCGTGCAAAATCTTCGCAGGACAGCGTCTCAGCTTCAGCCATGAGGCCACCAATGCCACCTCCTGCCCCCTCTGAACGGCAGCAGAAGAATCCCACTGGCAACGAAGCTCTAACTCCTCCATCTAACGGCAACGGCAACTCTGCTGCATCAAGAGTTGCCCCAGTCGTAGGATGGCCTCCCATTCGGTCATTCAGGAAGAATTTGGCACCTCAGCCCAAGCCTGATATTGAAGACCCAACTGATGCTTCTGGTAACTCTTATGCTTCTACCGATCCTGGACAGACCTTCGGAGATTCCATGTTTGTGAAGGTGAACATGGATGGTGTGCCCATTGGGAGAAAGATCGATCTCAAAGCCTATGATAGCTACGATAAATTGTCCCAAGCTCTTGAAGAAATGTTCAAACGCTTCATCAATGTGCAGGGCAGTGGGCAGAGACAACCTACCAATCCATCGTCTAAAAATGATCAGCCTACTCTATTAAGTGGAACCGATTATGTTCTCACTTATGAAGATAATGAAGGGGATCGTATGCTGGTTGGAGACGTACCTTGGGACATGTTTGTGAGTACAGTGAAGAGGCTGCGTATCATGAAGAGCTCAGAAGCACGGGGATTAGCACCGAGGCATCCTCTGAAGCCACAGGGTCAAGTGACCCAGTGA___CTAATGATTGAAAGCTCCAGTAAAGGGATCCCAAATGGAGGAGATCCCATTAGCAGCAGTGAAGGTTGGGGTGGTTTAAAGTGTGCGGGAAGGTAGGCAAGTTTTCATCAGGAATTGAAGAATTTTTTCTTGATGGTGGGGTGTAAAATACGATTTGAATATAATGTCAGTAAGAGTATCCAGAGAGGTATTCTCTTGCATGCATCATGACTTAATGGTTGTGTTGTATTATTTCGGCAGTTTTCTTCGAAGGCATACAAGAAATGCCTGTCTTCTCTCTTGGGATGTGCTGGAGGCATTGCCTTGTGACTCCAAGCACCTTCCGGATATTGCGTGGCTTCCTATTCTGAAACATGAACATAGACTAGGTTTTTTCTTCCTTTTTCTCTTTTGTTAACTGACATGGGGAATGTTTCCCATCTCTGTACTTTGAGGAACTGACCTCATGTTGTTTGTATATTTATTTGTATGAACTATTAAAATATGGTTTGAAGTTCTTTCCAATTGCAAAGGTGATTTCACAATGTTTCTTTGTGAGAACAGCTCCAATGTGGGTTTTCTTTGTATGTGCTTTGGATGGGTCACGTGTGCTGATTGTGGCATTGCCATTGACATGTAGAGCTTCAGGATTGTGCTTGGAAGGGTTTTGTCCAGCACATATTTCAGGTTGGATAGCTGGGGTCTCGGAGAATTAAAATGATTTGACTATTTTCTCTGCTTGGAAAATTCAAGTTGCCAACAGTTGTGTATAGCAAGTGCAGTCTTGTAAATCTGGTAGTAATGAGGTGCTGCTTGGCAGCTATGGACTTTCTGTACCTGTGGGTTACTTTTTCATTTATTTAACATTA

Fln Alignment:

Contig7243___APVVGWPPIRSFRKNLAPQPKPDIEDPTDASGNSYASTDPGQTFGDSM-----FVKVNMDGVPIGRKIDLKAYDSYDKLSQALEEMFKRFI--NVQGSGQRQPTNPSSKNDQPTLLSGTDYVLTYEDNEGDRMLVGDVPWDMFVSTVKRLRIMKSSEARGLAPR
O24407______________AQVVGWPPVRSFRKNVMSGQKPTTGDATE--GNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLID---LLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain