SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7212

Length: 2810 nt

UniGene Fasta

>sp_v3.0_unigene7212
CGTCGTGACCTTGGCGTCACTCAAAGAGTCGAGCTCCGTGGAATTTTCAAGTGCAGAGCAATCCAATGGAGATTTGCAGAAGTTTCACGTTTCTGATCTTACTGTGTTTTTCGGCATTTCTTGCATTTCAATGTAAGGTGGATGCAAGCACAAGCGTTAGCTATGATGGCAGAGCTTTGCTGATCAATGGACAGCGCAGGGTCTTAATATCTGGATCCATACACTACCCACGAAGCACACCAGAGATGTGGCCAGATCTTATTGCCAAGTCTAAGGATGGGGGAATCGATGTTATTGAGACCTATGTCTTTTGGAACGGTCATGAACCTCAGCCGCGTAAGTATTATTTTGAGGAAAGATTCGACTTGGTGAGGTTTTTGAAGACAGTTCAACAGGCAGGCCTTTATGCTCACCTTCGCATAGGACCTTATGCTTGTGCAGAATGGAATTATGGAGGTTTCCCTGTTTGGATGCACGCCATTCCAGGTATCAGGTTTAGAACAGACAACGAACCATTTAAGAATGAGATGCAAAATTTCACTACAAAGATAGTGGAAATGATGAAGGAAGAAAAGCTCTTCGCATGGCAAGGTGGACCCATTATTTTAACACAGATTGAGAATGAATATGGAAACATTGAGAAACCTTATGGAGAAAAGGGCCAGGCATATATACAGTGGGCTGCAAAAATGGCATTATCATTAAATACAGGCCTCCCTTGGATAATGTGCAAGCAAAAAGAAGCTCCAGACCCAATTATCAATACATGTAATGGTTACTACTGTGACAGTTTCAAACCTAATTCTCCTAAAAAGCCAAAGATGTGGACTGAGAATTGGGCAGGATGGTTTATGGCATTTGGATCGAGCATCCCTCATAGGCCTACAGAGGATGTTGCTTTTGCAGTAGCCCGATTTTACCAGAGAGGAGGAACATTTCAGAACTATTACATGTACCATGGAGGCACAAACTTTGGCCGGACACCTGGAGGTCCATTCATTGCCACCAGTTATGACTATGATGCACCAATTGACGAATATGGGAATATAAGGCAGCCGAAGTGGGGGCATCTGAAAGAGTTGCACAAAGCTATAAAACTAAGTGAACCTGCTCTGATTCGAGGGCGCGTGAATACCACTTCACTTGGGAAACGCCTTGAGGCAACAGTTTATTCTAAAGGTAGTAACTTATGTGCTGCCTTTCTCAGCAACAAGGACCTTAAGCATGCAGCAACCGTGCAATTCAATGGAAACTCTTATCAGCTACCTGCTTGGTCTGTCAGTATCTTACCTGACTGCAAAAATGTGGTCTTTAACACTGCAAAGGTTAGTGTACAGACTTCCTTAATGGGAATGGAGCAAGTTAGCACTGAGTCTCTTCGTCCTGCTGCAGCATCAAACGCAGATACAGGAAACTTATCTACAAACTGGTCATGGCACAAAGAAGATGTTGGAATCTGGGGAAAAGATCATTTCTCTGGCCAGGGCTTGTTAGAGCAGCTATACACTGTTCTAGATAAAAGTGACTTTCTATGGTATACAATCAGTGTTAATATCGATGAAAATGAACCCTTTCTAAAGAATGGAAGCCAATTAATCTTGCAAGTGGTAACACGAGGACATGCACTCCATGTGTTTGCCAATGGAAATTTTGTAGGAACTCAGAGTGGAAACTATTCGATTAATAATTTTACGTATGAGAAGCCGGTTACATTGAAGGCTGGCGAGAATCAGATAGCTTTGCTCAGTGTCACAGTTGGATTGGCGAATTACGGAGCTTTCTTTGATACATGGACTTCGGGAATAAATGGTCCTGTGAAATTGCTGGGACTTAAAAATGGGCCATTGGATCTGACTGACCAGACCTGGGATTACCAGATTGGTGTGAAGGGGGAACACTTAGAACTATATTCAGACGCTGGAGCCAAGCGAGTTGAATGGATTTCAGGAGCAGATCCTCCCAAACTAGCTGCCCTTATCTGGTACAAGACCGAGTTTAATGCACCAGAAGGCAACGATTCAGTGGCTCTGGACTTCAGCACCCTGGGCAAAGGGCAAGCATGGGTAAATGGGAATCATATTGGGCGCTATTTTCCAACACTGAAGGCTCCCGCCGATGAATGCTCTGAAGTTTGCGATTACAGAGGGCCTTATGAAGCATCCAAATGTGTCACTAACTGCGGACAACCCACACAAACATTGTACCATGTTCCTCGCTCGTGGCTGCAACCAACCAATAACGTGTTAGTTCTGCTCGAGGAAGTCGGTGGTGATCCTACTGGAATTTCACTCCGAAAAAGACAGGTGGACATTGTCTGCGCTCATGTTTCTCAAGATCACCCAACGGTTAACTCATCGACCTCACCAGAGCTACGGCTCCAGTGCTCTTCAGGGCAACACATATCATCCATAAGCTTTGCAAGCTTTGGAAATCCAACTGGGTATTGTGGAAATTTCATCAAAGGCTCGCACGATGCAGGGAGTTCAACTTCCTTGGTAGAAAATGCATGCGTAGGTAATGAGGCATGCTCAATCTCTGTCTCAGAAGATGTATTCGAAAGCCATTTTGATGAGGATGTGATCAAGTCTTTGGCAGTTGAGGCTGTTTGCAAATATTGATCAAACACTCATGCTCTCTCCGAGGCTTGATATTGTTGATAAATGTGTAAAAGGGTACTTAACCTTGTAATCATTGAATAGGGGGAACTGAAAAGTTTTGTTGATTAGGTTTAAATAATTTTATCAATTTATGTATTTAGGTTTCTGTGATTTATAAGGTAAGGTTTATAAAAAATATATATTTTATGTGAT

Ace file of the UniGene sp_v3.0_unigene7212

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Picea sitchensis RepID=A9NUR2_PICSI	-	-	61%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Sma3	Beta-galactosidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-galactosidase.	EC:3.2.1.23	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Galactose metabolism	00052	%
Sma3	Other glycan degradation	00511	%
Sma3	Glycosaminoglycan degradation	00531	%
Sma3	Sphingolipid metabolism	00600	%
Sma3	Glycosphingolipid biosynthesis - ganglio series	00604	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	AT3G13750; AT4G35010; AT5G56870; At1g31740; At1g45130; At1g77410; At2g16730; At2g28470; At2g32810; At3g13750; At3g52840; At4g26140; At4g36360; At4g38590; At5g20710; At5g56870; At5g63800; At5g63810; BG1; BGAL1; BGAL10; BGAL12; BGAL13; BGAL14; BGAL15; BGAL1

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	beta-galactosidase complex	GO:0009341	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	beta-galactosidase activity	GO:0004565	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	plant-type cell wall modification	GO:0009827	Biological Process	-
Sma3	coenzyme A metabolic process	GO:0015936	Biological Process	-
Sma3	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycoside hydrolase, family 35	IPR001944	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G28470.1	BGAL8 beta-galactosidase 8 chr2:12169047-12173164 REVERSE LENGTH=852	59%
RefSeq	Arabidopsis thaliana	NP_001189624.1	beta-galactosidase 8 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002314274.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg:

Fln protein: MEICRSFTFLILLCFSAFLAFQCKVDASTSVSYDGRALLINGQRRVLISGSIHYPRSTPEMWPDLIAKSKDGGIDVIETYVFWNGHEPQPRKYYFEERFDLVRFLKTVQQAGLYAHLRIGPYACAEWNYGGFPVWMHAIPGIRFRTDNEPFKNEMQNFTTKIVEMMKEEKLFAWQGGPIILTQIENEYGNIEKPYGEKGQAYIQWAAKMALSLNTGLPWIMCKQKEAPDPIINTCNGYYCDSFKPNSPKKPKMWTENWAGWFMAFGSSIPHRPTEDVAFAVARFYQRGGTFQNYYMYHGGTNFGRTPGGPFIATSYDYDAPIDEYGNIRQPKWGHLKELHKAIKLSEPALIRGRVNTTSLGKRLEATVYSKGSNLCAAFLSNKDLKHAATVQFNGNSYQLPAWSVSILPDCKNVVFNTAKVSVQTSLMGMEQVSTESLRPAAASNADTGNLSTNWSWHKEDVGIWGKDHFSGQGLLEQLYTVLDKSDFLWYTISVNIDENEPFLKNGSQLILQVVTRGHALHVFANGNFVGTQSGNYSINNFTYEKPVTLKAGENQIALLSVTVGLANYGAFFDTWTSGINGPVKLLGLKNGPLDLTDQTWDYQIGVKGEHLELYSDAGAKRVEWISGADPPKLAALIWYKTEFNAPEGNDSVALDFSTLGKGQAWVNGNHIGRYFPTLKAPADECSEVCDYRGPYEASKCVTNCGQPTQTLYHVPRSWLQPTNNVLVLLEEVGGDPTGISLRKRQVDIVCAHVSQDHPTVNSSTSPELRLQCSSGQHISSISFASFGNPTGYCGNFIKGSHDAGSSTSLVENACVGNEACSISVSEDVFESHFDEDVIKSLAVEAVCKY*

Protein Length: 852

Fln nts: CGTCGTGACCTTGGCGTCACTCAAAGAGTCGAGCTCCGTGGAATTTTCAAGTGCAGAGCAATCCA_-_ATGGAGATTTGCAGAAGTTTCACGTTTCTGATCTTACTGTGTTTTTCGGCATTTCTTGCATTTCAATGTAAGGTGGATGCAAGCACAAGCGTTAGCTATGATGGCAGAGCTTTGCTGATCAATGGACAGCGCAGGGTCTTAATATCTGGATCCATACACTACCCACGAAGCACACCAGAGATGTGGCCAGATCTTATTGCCAAGTCTAAGGATGGGGGAATCGATGTTATTGAGACCTATGTCTTTTGGAACGGTCATGAACCTCAGCCGCGTAAGTATTATTTTGAGGAAAGATTCGACTTGGTGAGGTTTTTGAAGACAGTTCAACAGGCAGGCCTTTATGCTCACCTTCGCATAGGACCTTATGCTTGTGCAGAATGGAATTATGGAGGTTTCCCTGTTTGGATGCACGCCATTCCAGGTATCAGGTTTAGAACAGACAACGAACCATTTAAGAATGAGATGCAAAATTTCACTACAAAGATAGTGGAAATGATGAAGGAAGAAAAGCTCTTCGCATGGCAAGGTGGACCCATTATTTTAACACAGATTGAGAATGAATATGGAAACATTGAGAAACCTTATGGAGAAAAGGGCCAGGCATATATACAGTGGGCTGCAAAAATGGCATTATCATTAAATACAGGCCTCCCTTGGATAATGTGCAAGCAAAAAGAAGCTCCAGACCCAATTATCAATACATGTAATGGTTACTACTGTGACAGTTTCAAACCTAATTCTCCTAAAAAGCCAAAGATGTGGACTGAGAATTGGGCAGGATGGTTTATGGCATTTGGATCGAGCATCCCTCATAGGCCTACAGAGGATGTTGCTTTTGCAGTAGCCCGATTTTACCAGAGAGGAGGAACATTTCAGAACTATTACATGTACCATGGAGGCACAAACTTTGGCCGGACACCTGGAGGTCCATTCATTGCCACCAGTTATGACTATGATGCACCAATTGACGAATATGGGAATATAAGGCAGCCGAAGTGGGGGCATCTGAAAGAGTTGCACAAAGCTATAAAACTAAGTGAACCTGCTCTGATTCGAGGGCGCGTGAATACCACTTCACTTGGGAAACGCCTTGAGGCAACAGTTTATTCTAAAGGTAGTAACTTATGTGCTGCCTTTCTCAGCAACAAGGACCTTAAGCATGCAGCAACCGTGCAATTCAATGGAAACTCTTATCAGCTACCTGCTTGGTCTGTCAGTATCTTACCTGACTGCAAAAATGTGGTCTTTAACACTGCAAAGGTTAGTGTACAGACTTCCTTAATGGGAATGGAGCAAGTTAGCACTGAGTCTCTTCGTCCTGCTGCAGCATCAAACGCAGATACAGGAAACTTATCTACAAACTGGTCATGGCACAAAGAAGATGTTGGAATCTGGGGAAAAGATCATTTCTCTGGCCAGGGCTTGTTAGAGCAGCTATACACTGTTCTAGATAAAAGTGACTTTCTATGGTATACAATCAGTGTTAATATCGATGAAAATGAACCCTTTCTAAAGAATGGAAGCCAATTAATCTTGCAAGTGGTAACACGAGGACATGCACTCCATGTGTTTGCCAATGGAAATTTTGTAGGAACTCAGAGTGGAAACTATTCGATTAATAATTTTACGTATGAGAAGCCGGTTACATTGAAGGCTGGCGAGAATCAGATAGCTTTGCTCAGTGTCACAGTTGGATTGGCGAATTACGGAGCTTTCTTTGATACATGGACTTCGGGAATAAATGGTCCTGTGAAATTGCTGGGACTTAAAAATGGGCCATTGGATCTGACTGACCAGACCTGGGATTACCAGATTGGTGTGAAGGGGGAACACTTAGAACTATATTCAGACGCTGGAGCCAAGCGAGTTGAATGGATTTCAGGAGCAGATCCTCCCAAACTAGCTGCCCTTATCTGGTACAAGACCGAGTTTAATGCACCAGAAGGCAACGATTCAGTGGCTCTGGACTTCAGCACCCTGGGCAAAGGGCAAGCATGGGTAAATGGGAATCATATTGGGCGCTATTTTCCAACACTGAAGGCTCCCGCCGATGAATGCTCTGAAGTTTGCGATTACAGAGGGCCTTATGAAGCATCCAAATGTGTCACTAACTGCGGACAACCCACACAAACATTGTACCATGTTCCTCGCTCGTGGCTGCAACCAACCAATAACGTGTTAGTTCTGCTCGAGGAAGTCGGTGGTGATCCTACTGGAATTTCACTCCGAAAAAGACAGGTGGACATTGTCTGCGCTCATGTTTCTCAAGATCACCCAACGGTTAACTCATCGACCTCACCAGAGCTACGGCTCCAGTGCTCTTCAGGGCAACACATATCATCCATAAGCTTTGCAAGCTTTGGAAATCCAACTGGGTATTGTGGAAATTTCATCAAAGGCTCGCACGATGCAGGGAGTTCAACTTCCTTGGTAGAAAATGCATGCGTAGGTAATGAGGCATGCTCAATCTCTGTCTCAGAAGATGTATTCGAAAGCCATTTTGATGAGGATGTGATCAAGTCTTTGGCAGTTGAGGCTGTTTGCAAATATTGA___TCAAACACTCATGCTCTCTCCGAGGCTTGATATTGTTGATAAATGTGTAAAAGGGTACTTAACCTTGTAATCATTGAATAGGGGGAACTGAAAAGTTTTGTTGATTAGGTTTAAATAATTTTATCAATTTATGTATTTAGGTTTCTGTGATTTATAAGGTAAGGTTTATAAAAAATATATATTTTATGTGAT

Fln Alignment:

Contig7212___MEICRSFTFLILLCFSAFLAFQCKVDASTSVSYDGRALLINGQRRVLISGSIHYPRSTPEMWPDLIAKSKDGGIDVIETYVFWNGHEPQPRKYYFEERFDLVRFLKTVQQAGLYAHLRIGPYACAEWNYGGFPVWMHAIPGIRFRTDNEPFKNEMQNFTTKIVEMMKEEKLFAWQGGPIILTQIENEYGNIEKPYGEKGQAYIQWAAKMALSLNTGLPWIMCKQKEAPDPIINTCNGYYCDSFKPNSPKKPKMWTENWAGWFMAFGSSIPHRPTEDVAFAVARFYQRGGTFQNYYMYHGGTNFGRTPGGPFIATSYDYDAPIDEYGNIRQPKWGHLKELHKAIKLSEPALIRGRVNTTSLGKRLEATVYSKGSNLCAAFLSNKDLKHAATVQFNGNSYQLPAWSVSILPDCKNVVFNTAKVSVQTSLMGMEQVSTESLRPAAASNADTGNLSTNWSWHKEDVGIWGKDHFSGQGLLEQLYTVLDKSDFLWYTISVNIDENEPFLKNGSQLILQVVTRGHALHVFANGNFVGTQSGNYSINNFTYEKPVTLKAGENQIALLSVTVGLANYGAFFDTWTSGINGPVKLLGLKNGPLDLTDQTWDYQIGVKGEHLELYSDAGAKRVEWISGADPPKLAALIWYKTEFNAPEGNDSVALDFSTLGKGQAWVNGNHIGRYFPTLKAPADECSEVCDYRGPYEASKCVTNCGQPTQTLYHVPRSWLQPTNNVLVLLEEVGGDPTGISLRKRQVDIVCAHVSQDH-PTVNSSTS------------PELRLQCSSGQH-ISSISFASFGNPTGYCGNFIKGSHDAGSSTSLVENACVGNEACSISVSEDVFESHFDEDVIKSLAVEAVC
A9NUR2______________MDLMRNLRLVLIYAFLFNGFYYWKHVSAANVTYDHRSLLIDGQRRVLISGSIHYPRSTPEMWPDIIQKAKDGGLDVIESYVFWNMHEPKQNEYYFEDRFDLVKFVKIVQQAGLLVHLRIGPYACAEWNYGGFPVWLHLIPGIHFRTDNEPFKNEMQRFTAKIVDMMKQEKLFASQGGPIILAQIENEYGNIDGPYGAAGKSYVKWAASMAVGLNTGVPWVMCQQADAPDPIINTCNGFYCDAFTPNSPNKPKMWTENWSGWFLSFGGRLPFRPTEDLAFSVARFFQRGGTFQNYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVRQPKWGHLKELHKAIKLCEAALVNAESNYTSLGSGLEAHVYSPGSGTCAAFLANSNTQSDATVKFNGNSYHLPAWSVSILPDCKNVVFNTAKIGSQTTSVQMNPANLILAGSNSMKGTDSAN-AASWSWLHEQIGIGGSNTFSKPGLLEQINTTVDSSDYLWYTTSIQVDDNEPFLHNGTQPVLHVQSLGHALHVFINGEFAGRGAGSSSSSKIALQTPITLKSGKNNIDLLSITVGLQNYGSFFDTWGAGITGPVILQGFKDGEHDLSTQQWTYQIGLTGEQLGIYSGDTKASAQWVAGSDLPTKQPMIWYKTNFDAPSGNDPVALNLLGMGKGVAWVNGQSIGRYWPSYIASQSGCTDSCDYRGAYSSTKCQTNCGQPSQKLYHVPRSWIQPTGNVLVLFEELGGDPTQISFMTRSVGSLCAQVSETHLPPVDSWKSSATSGLEVNKPKAELQLHCPSSRHLIKSIKFASFGTSKGSCGSFTYGHCNTNSTMSIVEEACIGRESCSVEVSIEKFGDPC-KGTVKNLAVEASC

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
1366		16		83	0.994512
1383	16		83		0.994512
1404		71		28	1.0
1471		22		77	0.999999
1482		22	77		0.999999
1516	77		22		0.999999
1552		22		77	0.999999
1555		11		88	0.923564
1579	71	28			1.0
1626		75		25	1.0
1650	87		12		0.992554
1651	14			85	0.993533
1654	14			85	0.993533
1655	16		83		0.994512
1657	66		16	16	0.988813
1666	16		83		0.994512
1676			16	83	0.994512
1686	83	16			0.994512
1688	83			16	0.994512
1689	83	16			0.994512
1699		20		80	0.995493
1715		20		80	0.995493
1727	16		83		0.994512
1736	83	16			0.994512
1763		20		80	0.995493
1764	20			80	0.995493
1766			80	20	0.995493
1769	80		20		0.995493
1968	20			80	0.995493
2362	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain