SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7205

Length: 2751 nt

UniGene Fasta

>sp_v3.0_unigene7205
CGTCGTGACCTTGGCTGTCACTCATTTTTTGCACCAACCCATCCACCCAGAAGAACCCTCCTAAAAAGGTTAATTGAACAAAGTGTGACGATCATTAAGAGTCCCCAATTGTAGGCGAGGTCCAGAAGAAAATATGTCTACAAATTGTAGTATAGTATGGTTTAGAAGGGATCTGAGGGTGGAGGACAATCCAGCCCTTGCAGCTGGAGTGAGAGCAGGGGCAGTGATTGTACTGTATATTTGGTCTCCAGAGGAAGAAGGCAACTATTATCCTGGTAGAGTTTCGAGGTGGTGGCTCAAGCAGAGCCTTGCTCATCTGGATTCTTCATTGAGGAACCTCGGTGCCCGTTTGATTACTAAGAGATCTACAAACAGTATATCTGCTATTCTCCAAGTTATTCAAGAAACTGGAGCCACTCAGCTATTCTACAATCATCTCTATGATCCTTTGTCGCTTGTTCGTGATCATAAGTTGAAGCAGGATCTCTCTTCTCGAGGCATACTGGTGAGAACATTCAATTCAGATTTACTATATGAGCCCTGGGAGGTCAATGATGAGGAAGGACATGCATTTTCCACCTTTCAGGCTTATTGGAATAAGTGCCTTAACATGCCATATGATCCGTCAGCTCCCCTTCTACCTCCCAAAAGGATTGTTGCAGGTGAAGTGTCTAACTGCCCATCAGATGATCTAAAACTGGAGGATGAATCTGAAAAGGCCAGCAATGCGCTTTTGGCAAGGGCATGGTCACCTGGTTGGAGCAGTGCTGACAAGGCTCTTACCGCGTTTATCAATGGACCTTTGCTTGACTATGCACTAAACCGTCAGAAAGCAGATAGTGCGACGACTTCTTTGCTGTCACCTCATCTGCATTTTGGGGAGTTGAGTGTTAGAAAGGTGTTCCACCTTGTCCGCATCAGACAAATTTTGTGGGCTAATGAGGGAAATACTTCAGGAGAACAGAGTGTGAATCTGTTTCTGAAGTCAATTGGTCTCCGGGAATATTCAAGATATTTAAGTTTCAATTTTCCTTGCAGCCATGAGAGGCCACTTCTTTCACATCTTAATTATTTCCCATGGAGGGTTGACAGGGATTACTTTAAATCTTGGAGGCAAGGTAGGACTGGCTATCCGCTAGTTGATGCTGGGATGCGGGAACTTTGGGCAACAGGATGGTTGCATGATCGAATCCGGGTGGTGGTCTCTAGTTTCTTTGTTAAGGTTCTCCAACTTCCCTGGAGATGGGGTATGAAGTATTTCTGGGACACGCTCCTGGATGCTGATCTAGAGTGTGATGCTCTTGGATGGCAGTACATTTCTGGTTGCTTGCCAGATGGCCGTGAGATGGATCGAATAGATAATCCTCAGTTTGAGGGCTACAAATTTGATCCAGCGGGAGAGTATGTCCGTCGCTGGCTTCCAGAGTTGGCTAGATTGCCCACACAGTGGATACATCATCCATGGGATGCACCACAAGCTGTTCTTCAGTCTGCTGGAGTTGAATTGGGTTCCAACTATCCCCTACCCATTGTAGAGATATCGACAGCTAAAGAGCGCTTGCAAGATGCCCTTTCAGAAATGTGGCAACGCGAAGCAGCTGCTAGAGCTTCTTTGGAAAATGGCACTGAAGAAGGTTTGGGAGAATCATTGGAAAATGCCAATGCCTCATTGTCAGAAAATATGGATGTTGACAGAGAGCCAGTTCGAGACAACACAGGTTTTGCAGCAAGGTCACAAGATGACCAATTGGTGCCAAGTATAAGCAATATGGTGCACAGGGCAGATGTAACTTATACTTTGAGTCAGGCTGCATCTTCTGCTCGATCTGAACAAGCAGAGGTACCTTCTAATAGAGATTCAGGAGCAGCTTCTGCAGCTTCATCTCAACAATTTTTAGGACAGTCCACTTGGTCCATGACAAGGGGTTTAATTGAAGATCTGCCAAATGTGATTAGTCATTATCCCCAAACGCAAGCCCTAGATGAACAGAGTGAATCTCATTCAACTGCAGATTCTTCTAGTATCTTGAGAATGCGAGATGATACAAGTAGTGGAGGCATTGTACCTGTCTGGTCGCAGTCTTTATCAGGACATTCACAGCAGTTCCCAGAGGAAGGAGCTGTTCCTGGAACAGCTGAATCTAGTCTTCAGCAACAATTACACAATCATTCAATGGGAACCTGGAGACATGGGCATAATCAAGGCAGCTTCACAATCATGCTAGACCAAGGAGCTAGGAGCTAGAGAATGTAGTACATTCCAATGATGTAGTGTAGTTTTGATATCCTTGTCAAGAACTGCAATGGCTGTTGAAATCCCCTATGCTTGAATTGCTAGGAAGATAAGGTTTGCAGTGTAAAGTAAGTTCTATTGTTTACAAAGGGGAGGAAATACTAGCAAAGCTTGCAGTCTAGATTGTCTTCGTATATTGAGGAGTTTTAAGCCTTATTCAAGCGCAGCGTATACTTGTCTACGTATATCAGACTCTAAATGTTAGTTTAGTCGCAAACTTCTCCAGAGATGAAGACTGCTGTAATATATTATTTTATCATGTATTATTTGTAAAGTTGTCTATTAGCATTTTAGCCAGTCAACGAAAAAGTTGGTAGATTTTATTTTGAAAAGAGTACAGATTCTGCTGTAATTATCATTGCAATCAATTTTGTAAGTTTGATCTGCACAAATATTCCCTCTGAATTTCCATGCCTTTCATTCAAAAGATTTGCTGAAGTTTTGTTTTCATTTGAATA

Ace file of the UniGene sp_v3.0_unigene7205

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cryptochrome 1 [Solanum lycopersicum] gb\|AAF72555.1\|AF130424_1 cryptochrome 1 [Solanum lycopersicum]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Cryptochrome/DNA photolyase, class 1	IPR002081	-	-
Sma3	Cryptochrome, plant	IPR014134	-	-
Sma3	Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal	IPR018394	-	-
Sma3	DNA photolyase, N-terminal	IPR006050	-	-
Sma3	DNA photolyase, FAD-binding/Cryptochrome, C-terminal	IPR005101	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G08920.1	CRY1, BLU1, HY4, OOP2, ATCRY1 cryptochrome 1 chr4:5724260-5726905 FORWARD LENGTH=681	64%
RefSeq	Arabidopsis thaliana	NP_567341.1	cryptochrome-1 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002301054.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPX1

Fln msg: your sequence is longer than subject: 704 - 655

Fln protein: MSTNCSIVWFRRDLRVEDNPALAAGVRAGAVIVLYIWSPEEEGNYYPGRVSRWWLKQSLAHLDSSLRNLGARLITKRSTNSISAILQVIQETGATQLFYNHLYDPLSLVRDHKLKQDLSSRGILVRTFNSDLLYEPWEVNDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVFHLVRIRQILWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPCSHERPLLSHLNYFPWRVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTLSQAASSARSEQAEVPSNRDSGAASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQTQALDEQSESHSTADSSSILRMRDDTSSGGIVPVWSQSLSGHSQQFPEEGAVPGTAESSLQQQLHNHSMGTWRHGHNQGSFTIMLDQGARS*

Protein Length: 705

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTGCACCAACCCATCCACCCAGAAGAACCCTCCTAAAAAGGTTAATTGAACAAAGTGTGACGATCATTAAGAGTCCCCAATTGTAGGCGAGGTCCAGAAGAAAAT_-_ATGTCTACAAATTGTAGTATAGTATGGTTTAGAAGGGATCTGAGGGTGGAGGACAATCCAGCCCTTGCAGCTGGAGTGAGAGCAGGGGCAGTGATTGTACTGTATATTTGGTCTCCAGAGGAAGAAGGCAACTATTATCCTGGTAGAGTTTCGAGGTGGTGGCTCAAGCAGAGCCTTGCTCATCTGGATTCTTCATTGAGGAACCTCGGTGCCCGTTTGATTACTAAGAGATCTACAAACAGTATATCTGCTATTCTCCAAGTTATTCAAGAAACTGGAGCCACTCAGCTATTCTACAATCATCTCTATGATCCTTTGTCGCTTGTTCGTGATCATAAGTTGAAGCAGGATCTCTCTTCTCGAGGCATACTGGTGAGAACATTCAATTCAGATTTACTATATGAGCCCTGGGAGGTCAATGATGAGGAAGGACATGCATTTTCCACCTTTCAGGCTTATTGGAATAAGTGCCTTAACATGCCATATGATCCGTCAGCTCCCCTTCTACCTCCCAAAAGGATTGTTGCAGGTGAAGTGTCTAACTGCCCATCAGATGATCTAAAACTGGAGGATGAATCTGAAAAGGCCAGCAATGCGCTTTTGGCAAGGGCATGGTCACCTGGTTGGAGCAGTGCTGACAAGGCTCTTACCGCGTTTATCAATGGACCTTTGCTTGACTATGCACTAAACCGTCAGAAAGCAGATAGTGCGACGACTTCTTTGCTGTCACCTCATCTGCATTTTGGGGAGTTGAGTGTTAGAAAGGTGTTCCACCTTGTCCGCATCAGACAAATTTTGTGGGCTAATGAGGGAAATACTTCAGGAGAACAGAGTGTGAATCTGTTTCTGAAGTCAATTGGTCTCCGGGAATATTCAAGATATTTAAGTTTCAATTTTCCTTGCAGCCATGAGAGGCCACTTCTTTCACATCTTAATTATTTCCCATGGAGGGTTGACAGGGATTACTTTAAATCTTGGAGGCAAGGTAGGACTGGCTATCCGCTAGTTGATGCTGGGATGCGGGAACTTTGGGCAACAGGATGGTTGCATGATCGAATCCGGGTGGTGGTCTCTAGTTTCTTTGTTAAGGTTCTCCAACTTCCCTGGAGATGGGGTATGAAGTATTTCTGGGACACGCTCCTGGATGCTGATCTAGAGTGTGATGCTCTTGGATGGCAGTACATTTCTGGTTGCTTGCCAGATGGCCGTGAGATGGATCGAATAGATAATCCTCAGTTTGAGGGCTACAAATTTGATCCAGCGGGAGAGTATGTCCGTCGCTGGCTTCCAGAGTTGGCTAGATTGCCCACACAGTGGATACATCATCCATGGGATGCACCACAAGCTGTTCTTCAGTCTGCTGGAGTTGAATTGGGTTCCAACTATCCCCTACCCATTGTAGAGATATCGACAGCTAAAGAGCGCTTGCAAGATGCCCTTTCAGAAATGTGGCAACGCGAAGCAGCTGCTAGAGCTTCTTTGGAAAATGGCACTGAAGAAGGTTTGGGAGAATCATTGGAAAATGCCAATGCCTCATTGTCAGAAAATATGGATGTTGACAGAGAGCCAGTTCGAGACAACACAGGTTTTGCAGCAAGGTCACAAGATGACCAATTGGTGCCAAGTATAAGCAATATGGTGCACAGGGCAGATGTAACTTATACTTTGAGTCAGGCTGCATCTTCTGCTCGATCTGAACAAGCAGAGGTACCTTCTAATAGAGATTCAGGAGCAGCTTCTGCAGCTTCATCTCAACAATTTTTAGGACAGTCCACTTGGTCCATGACAAGGGGTTTAATTGAAGATCTGCCAAATGTGATTAGTCATTATCCCCAAACGCAAGCCCTAGATGAACAGAGTGAATCTCATTCAACTGCAGATTCTTCTAGTATCTTGAGAATGCGAGATGATACAAGTAGTGGAGGCATTGTACCTGTCTGGTCGCAGTCTTTATCAGGACATTCACAGCAGTTCCCAGAGGAAGGAGCTGTTCCTGGAACAGCTGAATCTAGTCTTCAGCAACAATTACACAATCATTCAATGGGAACCTGGAGACATGGGCATAATCAAGGCAGCTTCACAATCATGCTAGACCAAGGAGCTAGGAGCTAG___AGAATGTAGTACATTCCAATGATGTAGTGTAGTTTTGATATCCTTGTCAAGAACTGCAATGGCTGTTGAAATCCCCTATGCTTGAATTGCTAGGAAGATAAGGTTTGCAGTGTAAAGTAAGTTCTATTGTTTACAAAGGGGAGGAAATACTAGCAAAGCTTGCAGTCTAGATTGTCTTCGTATATTGAGGAGTTTTAAGCCTTATTCAAGCGCAGCGTATACTTGTCTACGTATATCAGACTCTAAATGTTAGTTTAGTCGCAAACTTCTCCAGAGATGAAGACTGCTGTAATATATTATTTTATCATGTATTATTTGTAAAGTTGTCTATTAGCATTTTAGCCAGTCAACGAAAAAGTTGGTAGATTTTATTTTGAAAAGAGTACAGATTCTGCTGTAATTATCATTGCAATCAATTTTGTAAGTTTGATCTGCACAAATATTCCCTCTGAATTTCCATGCCTTTCATTCAAAAGATTTGCTGAAGTTTTGTTTTCATTTGAATA

Fln Alignment:

Contig7205___MSTNCSIVWFRRDLRVEDNPALAAGVRAGAVIVLYIWSPEEEGNYYPGRVSRWWLKQSLAHLDSSLRNLGARLITKRSTNSISAILQVIQETGATQLFYNHLYDPLSLVRDHKLKQDLSSRGILVRTFNSDLLYEPWEVNDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVFHLVRIRQILWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPCSHERPLLSHLNYFPWRVDRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQWIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGTEEGLGESLENANASLSENMDVDREPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTLXXXXXXXXXXXXXVPSNRDXXXXXXXXXQQFLGQSTWSMTRGLIEDLPNVISHYPQTQALDEQSESHSTADSSSILRMRDDTSSGGIVPVWSQSLS
B8LPX1______________MSTNCSIVWFRRDLRVEDNPALAAGVRAGAVIVLYIWSPEEEGQYYPGRVSRWWLKQSLAHLDSSLRNLGARLITKRSTNSISAILQVVQATGATQLFYNHLYDPLSLVRDHKLKQDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDPLAPLLPPKRIVAGEVSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINRQKADSATTSLLSPHLHFGELSVKKVFHLLRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHEKPLLSHLNYFPWRVDSDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHPWDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQREADARASLENGTEEGLGESLENANASLPDQMDVDREPVRNNTDLAARSQDDQLVPSISNAVQRAYVGYTLSQAASSSPSEQAEVPSNTDSGIASAASSQQFLVQSTWSMTRGLIEDLPNVTNDYPQMQVLDEQNESHSTADSSSILRGRDDMSSGGIVPVWSQSLS

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
348		83		16	0.994512
458		16		83	0.994512
506		16		83	0.994512
549		14	85		0.993533
554	85		14		0.993533
558		14		85	0.993533
559		14	85		0.993533
560	85			14	0.993533
561			71	14	0.984337
563	85		14		0.993533
564	85	14			0.993533
565			85	14	0.993533
567	85			14	0.993533
570		14		85	0.993533
571			85	14	0.993533
612		85		14	0.993533
693		14		85	0.993533
694	14	85			0.993533
696	85			14	0.993533
830	80		20		0.995493
847	80		20		0.995493
891		25		75	0.996473
924	80		20		0.995493
1007	88			11	0.923564
1008		11		88	0.923564
1009			11	88	0.923564
1096		16	83		0.994512
1244	16		83		0.994512
1581	85	14			0.993533
1678		14	85		0.993533
1680	85			14	0.993533
1681	85			14	0.993533
1768	85			14	0.993533
1770		14		85	0.993533
1773			85	14	0.993533
1779		85	14		0.993533
1780	85		14		0.993533
1934		20		80	0.995493
2352			21	78	1.0
2354			78	21	1.0
2355		78		21	1.0
2359	16		83		1.0
2364	16		83		1.0
2367	82	17			1.0
2368			82	17	1.0
2372	17			82	1.0
2373	87		12		0.999964
2682	33	66			0.997452
2683	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain