SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7201

Length: 2262 nt

UniGene Fasta

>sp_v3.0_unigene7201
AATGAAGACTCTGAAGAAGAAGAGAACCAGTCGGAGTACATTGAAGATAGAAATGAGGGCGAGGGTCTTTTCAATGATGGCACAAAGGTCGAGGAGGAAGAGTTCGGCACCTATGAAGAATTGGATGCCGAAAGAAGCAAAAGGCGAAGATTATGTGAAGAGAAAGGGATTGAACATGAGGAAAGAAGAGAGGTACAAATGTCAATGAAGCAAGAACTTGAAGTTAATATACAAGCATCTAGTAGTAGTCAAGAATGCCCTCCACATCCAGGATTTATGTGGGGAGTTTGCATTCGCTGTGGCATGATGAAGCAAAATTCTGAGTCTAATGATCAAACTGGTGTTGCCCTCAAATATATTCACAAGGATTTCGAACTTGCAGATACAGAAATCGAACGGTTACGTGAAAGTGATCTGAAGAAATTGTTACCAAGGCAGAAATTATATTTAGTACTGGATTTGGATCACACATTGCTGAATTCTGCTCGATTTGTTGATATTCTTCCTGAAGAGGAGGCGTACATCACATCAACATACCTAACAGGAGTATTGAATCCTGGTTCAGAAGTTGGGGACACCAGCAGGAGCTTGTACAGATTGATGTCCTTGCAAATGTGGACGAAACTTAGGCCTTTCGTGCACAAGTTTTTGGAGGAGGCAAATGAGATGTATGAGATGTATGTCTATACAATGGGGGAGCGTGGTTATGCTTTGAAAATGGCAAAACTTCTTGATCCCACAGGAAAATATTTTGGCACTAGAGTCATTTCACAGGGGGACAGTACCCACAGACATCAAAAAAACCTGGATGTGGTACTGGGAGCAGAGTCAGCAGTTGTGATTCTTGATGATACAGAGAATGTATGGCCAAGGCACAGATCAAATCTGATGGTGATGGAAAGATACCATTTCTTTAGCTCAAGTTGTCGACAATATAATATCCAAGGTCAATCATTTACACAGGCAATGAGGGATGAAACAGAGATGGAGGGCACTCTTGCCAGCATGCTACGTGCACTGCGTTCTGTGCATCAGATATTTTTTGATGAGAATAATGATAAAGATATTGCTCAATCGGGCTTCAATAGCAGAGATGTAAGACAGGTTATAAAAGCTGTGCGTTTGAAAGTTCTTGAAGGTTGCAAAATTGTCTTCAGCCGGATCTTCCCAATGGATTATCCTGCTGAGAAACATCATCTTTGGCGTACGGCTGAAGAATTAGGAGCAACATGTTCTACCGCATTAGATGAATCTGTAACTCATGTTGTTGCTCTAGATTTAGGAACTGATAAAGCACGCTGGGCTGTGCAGCATAAACGTTATTTGGTTCACCCTCACTGGCTTGAAGCAGCAGGCTACTTGTGGCAAAGGCAAGTTGAAGAAAAATTCTCCATCACTGCTAAGAAAAATAGTTCGATATCAACTTTTGTTGAATCTATTCCAGTGTTGCCTTGGGAAGATGCAGAGAAGGAAGAGGATTCCTGATGTTGCTGTCGAAACATTCAAAGTTGATTGGAGTAGCATCTAACAGGGATTCCATAGTGGGCTGATTGTACTAGAAGCATTGTATTTGGTTAGTACTAACAAACAATTGAGTGCATTCAGAGGTATTGTCGTAACATCCGAGATGAGTGCGTCGATAAATTTCCAATCATTTTCATATTTTCTCTAGAATCTAAGCTTCTTAATACTACGATTACCCTATCTCTTGTTTCAGGCTTCTTAAAACATGGGAGGGGAAAGAATTTGGTTTAGATAGATACCATATTAAGATGGGGGTGCAAAGTAAGAAAATTACTGTAAGAGTTGAAAAAATGTATGTATTCTACGGTGGAAAACAAGTAGGTTGAAGCCTGAAGTCCCACATCACTTTAACATCTCACGTTGCAAACTGAAGTAAGAAAATTGTTGATACAAGTGTTCATCAAATTGATAGGATTTTGCATGATTCAGATTGACATATAGTCCTACTTAACGTCTATTTTAGGGTGGTTGTTGGGAGGAAAGGTCAAATTTCCCCAGATGGGAATGGCAGTCTCAGACTAGATTTCCTAGCAGAAAATTATTCTGGTAAGAAACCATGCCATCAAAAGACATGTGGAATGAAGGTAAAAACTACGATTTCTTTTCTTACAAAGCCAGCAGCAGTTTTGCAGACAAGATATAAATGGACAGATAAAATGTGCAAACAATAACTAAAACAACCTTTCTATTTATGAACTGTTATATGGTATATTATCAATTATTTCAAACTTGTTTTGA

Ace file of the UniGene sp_v3.0_unigene7201

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA polymerase II C-terminal domain phosphatase-like 4 [Arabidopsis thaliana] sp\|Q00IB6.1\|CPL4_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like 4; Short=FCP-like 4; AltName: Full=Carboxyl-terminal phosphatase-like 4; Short=AtCPL4;	-	-	0.0	51%
FL-Next	sp=RNA polymerase II C-terminal domain phosphatase-like 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%
Sma3	RNA polymerase II ctd phosphatase, putative	-	-	2.95e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	5.547e-07	-

Source	Gene names
Sma3	At2g33540; At5g58003; CPL3; CPL4; F4P9.31; GSVIVT00006176001; GSVIVT00013355001; GSVIVT00035715001; GSVIVT00036371001; LOC_Os11g31890; MICPUCDRAFT_6677; OJ1004_E04.5; OJ1057_G07.1; OJ1695_H09.20; Os05g0390500; Os11g0521900; OsI_09278; OsI_19828; OsI_19829

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	NLI interacting factor	IPR004274	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	FCP1-like phosphatase, phosphatase domain	IPR011947	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G58003.1	CPL4 C-terminal domain phosphatase-like 4 chr5:23480066-23481924 FORWARD LENGTH=440	54%
RefSeq	Arabidopsis thaliana	NP_001078764.1	RNA polymerase II C-terminal domain phosphatase-like 4 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002324547.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q00IB6

Fln msg: No stop codon before M and M found is too far from subject M,

Fln protein: MSMKQELEVNIQASSSSQECPPHPGFMWGVCIRCGMMKQNSESNDQTGVALKYIHKDFELADTEIERLRESDLKKLLPRQKLYLVLDLDHTLLNSARFVDILPEEEAYITSTYLTGVLNPGSEVGDTSRSLYRLMSLQMWTKLRPFVHKFLEEANEMYEMYVYTMGERGYALKMAKLLDPTGKYFGTRVISQGDSTHRHQKNLDVVLGAESAVVILDDTENVWPRHRSNLMVMERYHFFSSSCRQYNIQGQSFTQAMRDETEMEGTLASMLRALRSVHQIFFDENNDKDIAQSGFNSRDVRQVIKAVRLKVLEGCKIVFSRIFPMDYPAEKHHLWRTAEELGATCSTALDESVTHVVALDLGTDKARWAVQHKRYLVHPHWLEAAGYLWQRQVEEKFSITAKKNSSISTFVESIPVLPWEDAEKEEDS*

Protein Length: 430

Fln nts: AATGAAGACTCTGAAGAAGAAGAGAACCAGTCGGAGTACATTGAAGATAGAAATGAGGGCGAGGGTCTTTTCAATGATGGCACAAAGGTCGAGGAGGAAGAGTTCGGCACCTATGAAGAATTGGATGCCGAAAGAAGCAAAAGGCGAAGATTATGTGAAGAGAAAGGGATTGAACATGAGGAAAGAAGAGAGGTACAAATGTCAATGAAGCAAGAACTTGAAGTTAATATACAAGCATCTAGTAGTAGTCAAGAATGCCCTCCACATCCAGGATTTATGTGGGGAGTTTGCATTCGCTGTGGCATGATGAAGCAAAATTCTGAGTCTAATGATCAAACTGGTGTTGCCCTCAAATATATTCACAAGGATTTCGAACTTGCAGATACAGAAATCGAACGGTTACGTGAAAGTGATCTGAAGAAATTGTTACCAAGGCAGAAATTATATTTAGTACTGGATTTGGATCACACATTGCTGAATTCTGCTCGATTTGTTGATATTCTTCCTGAAGAGGAGGCGTACATCACATCAACATACCTAACAGGAGTATTGAATCCTGGTTCAGAAGTTGGGGACACCAGCAGGAGCTTGTACAGATTGATGTCCTTGCAAATGTGGACGAAACTTAGGCCTTTCGTGCACAAGTTTTTGGAGGAGGCAAATGAGATGTATGAGATGTATGTCTATACAATGGGGGAGCGTGGTTATGCTTTGAAAATGGCAAAACTTCTTGATCCCACAGGAAAATATTTTGGCACTAGAGTCATTTCACAGGGGGACAGTACCCACAGACATCAAAAAAACCTGGATGTGGTACTGGGAGCAGAGTCAGCAGTTGTGATTCTTGATGATACAGAGAATGTATGGCCAAGGCACAGATCAAATCTGATGGTGATGGAAAGATACCATTTCTTTAGCTCAAGTTGTCGACAATATAATATCCAAGGTCAATCATTTACACAGGCAATGAGGGATGAAACAGAGATGGAGGGCACTCTTGCCAGCATGCTACGTGCACTGCGTTCTGTGCATCAGATATTTTTTGATGAGAATAATGATAAAGATATTGCTCAATCGGGCTTCAATAGCAGAGATGTAAGACAGGTTATAAAAGCTGTGCGTTTGAAAGTTCTTGAAGGTTGCAAAATTGTCTTCAGCCGGATCTTCCCAATGGATTATCCTGCTGAGAAACATCATCTTTGGCGTACGGCTGAAGAATTAGGAGCAACATGTTCTACCGCATTAGATGAATCTGTAACTCATGTTGTTGCTCTAGATTTAGGAACTGATAAAGCACGCTGGGCTGTGCAGCATAAACGTTATTTGGTTCACCCTCACTGGCTTGAAGCAGCAGGCTACTTGTGGCAAAGGCAAGTTGAAGAAAAATTCTCCATCACTGCTAAGAAAAATAGTTCGATATCAACTTTTGTTGAATCTATTCCAGTGTTGCCTTGGGAAGATGCAGAGAAGGAAGAGGATTCCTGA___TGTTGCTGTCGAAACATTCAAAGTTGATTGGAGTAGCATCTAACAGGGATTCCATAGTGGGCTGATTGTACTAGAAGCATTGTATTTGGTTAGTACTAACAAACAATTGAGTGCATTCAGAGGTATTGTCGTAACATCCGAGATGAGTGCGTCGATAAATTTCCAATCATTTTCATATTTTCTCTAGAATCTAAGCTTCTTAATACTACGATTACCCTATCTCTTGTTTCAGGCTTCTTAAAACATGGGAGGGGAAAGAATTTGGTTTAGATAGATACCATATTAAGATGGGGGTGCAAAGTAAGAAAATTACTGTAAGAGTTGAAAAAATGTATGTATTCTACGGTGGAAAACAAGTAGGTTGAAGCCTGAAGTCCCACATCACTTTAACATCTCACGTTGCAAACTGAAGTAAGAAAATTGTTGATACAAGTGTTCATCAAATTGATAGGATTTTGCATGATTCAGATTGACATATAGTCCTACTTAACGTCTATTTTAGGGTGGTTGTTGGGAGGAAAGGTCAAATTTCCCCAGATGGGAATGGCAGTCTCAGACTAGATTTCCTAGCAGAAAATTATTCTGGTAAGAAACCATGCCATCAAAAGACATGTGGAATGAAGGTAAAAACTACGATTTCTTTTCTTACAAAGCCAGCAGCAGTTTTGCAGACAAGATATAAATGGACAGATAAAATGTGCAAACAATAACTAAAACAACCTTTCTATTTATGAACTGTTATATGGTATATTATCAATTATTTCAAACTTGTTTTGA

Fln Alignment:

Contig7201___KQELEVNIQASSSSQECPPHPGFMWGVCIRCGMMKQNSESNDQTGVALKYIHKDFELADTEIERLRESDLKKLLPRQKXXXXXXXXXXXXNSARFVDILPEEEAYITSTYLTGVLNPGSEVGDTSRSLYRLMSLQMWTKLRPFVHKFLEEANEMYEMYVYTMGERGYALKMAKLLDPTGKYFGTRVISQGDSTHRHQKNLDVVLGAESAVVILDDTENVWPRHRSNLMVMERYHFFSSSCRQYNIQGQSFTQAMRDETEMEGTLASMLRALRSVHQIFFDENNDKDIAQSGFNSRDVRQVIKAVRLKVLEGCKIVFSRIFPMDYPAEKHHLWRTAEELGATCSTALDESVTHVVALDLGTDKARWAVQHKRYLVHPHWLEAAGYLWQRQVEEKFSITAKK
Q00IB6______________RQKLEHLEEASSSKGECE-HPGSFGNMCFVCG------QKLEETGVSFRYIHKEMRLNEDEISRLRDSDSRFLQRQRKLYLVLDLDHTLLNTTILRDLKPEEE-YLKSH--THSLQDGCNV--SGGSLFLLEFMQMMTKLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDVVLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDGALATVLKVLKQAHALFF-ENVDE-----GISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENFGLEQLK

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
237	14	85			0.993533
240		85	14		0.993533
289			11	88	0.923564
290			11	77	0.968132
321	12	87			0.992554
322		12		87	0.992554
325			87	12	0.992554
370		12		87	0.992554
373		50		50	1.0
386	87		12		0.992554
642	16		83		0.994512
1042	66			33	0.997452
1043	33			66	0.997452
1244	12		87		0.992554
1246	85		14		0.993533
1248			14	85	0.993533
1250		14	85		0.993533
1251	85	14			0.993533
1253			85	14	0.993533
1254	85		14		0.993533
1255	85		14		0.993533
1261	85	14			0.993533
1316		85		14	0.993533
1560		80	20		0.995493
1561		20		80	0.995493
1674		20		20	0.99255
1675		20		80	0.995493
1698		20		80	0.995493
1889		83	16		0.994512
2101		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain