SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7200

Length: 2336 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene7200
GCTTCACGAGGCACTATAAATAGTCAACCCTCTCTTTACATGGGGACAGCGTTTGTCTGCAGTCGGCCATACATACTCTGTTACTAAAACCGATCTACAGACCTCGATGCTTGCAACAATGAAAACTGCAAGGCTTCTGCTTCTGTTACTCTTCTTCTGCTTATGCTTATTACATGTAGCCGTTTCCGAGCAGGATGAGATTATAGCGGATAGGACTTGCCGCGCCGAGCCGGGGTTGGAATCCGACTTTGGCATTCAGAAGGAATGGGAAGGGGAATTCTTTCCAGGAATTTCGAAGATAAAGTATGAGGGGCCATTGAGTAAGAATCCTCTGGCATTCAAATGGTATAATGCAGAAGAAGAGATTCTTGGAAAGAAAATGAAGGATTGGCTGAGATTTAGTGTTGCTTTCTGGCATACATTCCGTGGCAGTGGGGCTGATCCATTTGGGGCTCCAACCAAGAACTGGCCATGGGAAGATGGCACTAACTCATTAGCTATGGCTTTAAGAAGAATGAAAGCGAATTTTGAGTTTCTAACTAAATTAGGAGTTGAGCTGTGGTGCTTTCATGACCGTGACATTGCTCCTGATGGGAAAACACTCATAGAGTCTAATGCCAATCTGGATGCAGTTGTGGCTCTTGCAAAGCAGCTTCAGGAGGAAACTGGCATTCATACTTTGTGGGGAACTGCACAGTTGTTCATGCATCCTCGTTACATGCATGGAGCTGCTACGAGTCCAGATGTACGTGTTTATGCATATGCTGCAGCTCAAGTAAAGAAAGCCATGGAGGTAACACATGAATTAGGAGGAGAAAACTTTGTCTTCTGGGGTGGAAGAGAAGGTTACCAAACTCTCTTGAATACTGATCTAAAGAAGGAGCTTGACCATATGGCTAAATTTCTTCAAGCAGCGGTGAACTGGAAGAAAACCATTGGCTTCAATGGGACCCTTCTAATTGAGCCTAAGCCACAAGAACCTACAAAACACCAGTATGATTGGGATGCTGCAACAACTATGGGCTTCCTACAAAGATATGGGCTTGCAGGAGAATTTAAATTAAATGTTGAGTGCAATCATGCAACCCTCTCTGGGCACAGCTGTCATCACGAGCTGGAAATAGCACGGATTTATGGGATGCTTGGAAACATTGATGCAAACACTGGAGATGCCCAAACAGGCTGGGATACTGATCAATTTCCTACGGATATTGGAGAAGCAACTTTAATTATGTTGACTGTTATAAAGAATGGTGGGCTTGCACCTGGTGGGTTCAACTTTGATGCAAAATTGCGGAGAGAGAGTGTAGATGTGGAAGATCTATTCATTGCTCATATATCGGGCATGGACACTCTTGCACGGGGCTTGAGAAATGCGGCTAAGCTCTTGCAGGATGGAAGAATGTCAGAGCTTGTTGCAAAACGTTATGAAACCTTCAATTCAAAACTAGGAGCTCTGATTGAGGATGGAGAGGTCAGTTTTGAGGAACTTGAAAAGAAAGCTCATGAATGGGGTGAACCTCCACTGTCATCAGGGAAGCAGGAACTTGCGGAGATGATTTTCCAGTCATACTTGTAATTAGAAACTGTTAATCATACTTGTAATTAGAAACTGTTCATATGTCGAGAGCAAATGGGAAGCATAGGATCAGCAATCGTTACTTTCTTATAAGTGGTTTAAAAGAATAGGAAACATGTAACGCATAATGCTCTGCACCTAGTTAACGATACGCGAATTGTTAGTTTGTCTTCTTCTGTTAGTGAGGTGGCTTTCAACATGTAATAAATGCATTTTCGGTAGTAACACGCATGCGGCCATCTGTCAAGATCAAATGGGAAGCACAGGATCAACCATGGTTACTTTCTTAGAAGTGGTTCAAAAGAATAGGAAACATGTAGCGCATAGTTAACGATACGCCGAATTTGTTAGTCTGTCTCCTTTCCATTGGACTTGCTATGCAATTAAGAAAATCACACGTTGCATGGATTATTTGCATTGAATTTTACTGTCAAAAGGTCATCTGCCATACTCATATTTCATTCTAGTGTTAAACTGAAGGTGGCTATTATGTAAAAGGTTAATTACTCTTGTTTTTAATCCCTCTGATCGGCGAGGTGCTCTAGGTTGGGTGAGGGAGATCTTACATGTATGGCTTGTAACACCAAAGAATTTAGTTTATATCTATTGTAATAGGCACATTACACGTTTAGTAATTTAACCAGGACAAACCACAATCCAGTTTACCGTGCTAGAAATTGGAAGGTTAACTAACACAACCTAAAGCATTAATATGTGATTAACGTGTATTTTTCAATGTACTATTTCTCTAGCAGTG

Ace file of the UniGene sp_v3.0_unigene7200 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xylose isomerase n=1 Tax=Picea sitchensis RepID=B8LKP5_PICSI	-	-	0.0	93%
FL-Next	sp=Xylose isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	ECs	Term	Type	e value	Identity
Sma3	Xylose isomerase.	EC:5.3.1.5	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose and glucuronate interconversions	00040	%
Sma3	Fructose and mannose metabolism	00051	%
Sma3	Metabolic pathways	01100	%

Source	InterPros	Term	Type	Identity
Sma3	Xylose isomerase-like, TIM barrel domain	IPR013022	-	-
Sma3	Xylose isomerase, TIM barrel domain	IPR012307	-	-
Sma3	Xylose isomerase, bacterial-type	IPR013452	-	-
Sma3	Xylose isomerase	IPR001998	-	-
Sma3		IPR018115	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57655.2	xylose isomerase family protein chr5:23347030-23349805 FORWARD LENGTH=477	76%
RefSeq	Arabidopsis thaliana	NP_568861.3	xylose isomerase [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002324488.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKP5

Fln msg: your sequence is longer than subject: 491 - 399

Fln protein: MLATMKTARLLLLLLFFCLCLLHVAVSEQDEIIADRTCRAEPGLESDFGIQKEWEGEFFPGISKIKYEGPLSKNPLAFKWYNAEEEILGKKMKDWLRFSVAFWHTFRGSGADPFGAPTKNWPWEDGTNSLAMALRRMKANFEFLTKLGVELWCFHDRDIAPDGKTLIESNANLDAVVALAKQLQEETGIHTLWGTAQLFMHPRYMHGAATSPDVRVYAYAAAQVKKAMEVTHELGGENFVFWGGREGYQTLLNTDLKKELDHMAKFLQAAVNWKKTIGFNGTLLIEPKPQEPTKHQYDWDAATTMGFLQRYGLAGEFKLNVECNHATLSGHSCHHELEIARIYGMLGNIDANTGDAQTGWDTDQFPTDIGEATLIMLTVIKNGGLAPGGFNFDAKLRRESVDVEDLFIAHISGMDTLARGLRNAAKLLQDGRMSELVAKRYETFNSKLGALIEDGEVSFEELEKKAHEWGEPPLSSGKQELAEMIFQSYL*

Protein Length: 492

Fln nts: GCTTCACGAGGCACTATAAATAGTCAACCCTCTCTTTACATGGGGACAGCGTTTGTCTGCAGTCGGCCATACATACTCTGTTACTAAAACCGATCTACAGACCTCG_-_ATGCTTGCAACAATGAAAACTGCAAGGCTTCTGCTTCTGTTACTCTTCTTCTGCTTATGCTTATTACATGTAGCCGTTTCCGAGCAGGATGAGATTATAGCGGATAGGACTTGCCGCGCCGAGCCGGGGTTGGAATCCGACTTTGGCATTCAGAAGGAATGGGAAGGGGAATTCTTTCCAGGAATTTCGAAGATAAAGTATGAGGGGCCATTGAGTAAGAATCCTCTGGCATTCAAATGGTATAATGCAGAAGAAGAGATTCTTGGAAAGAAAATGAAGGATTGGCTGAGATTTAGTGTTGCTTTCTGGCATACATTCCGTGGCAGTGGGGCTGATCCATTTGGGGCTCCAACCAAGAACTGGCCATGGGAAGATGGCACTAACTCATTAGCTATGGCTTTAAGAAGAATGAAAGCGAATTTTGAGTTTCTAACTAAATTAGGAGTTGAGCTGTGGTGCTTTCATGACCGTGACATTGCTCCTGATGGGAAAACACTCATAGAGTCTAATGCCAATCTGGATGCAGTTGTGGCTCTTGCAAAGCAGCTTCAGGAGGAAACTGGCATTCATACTTTGTGGGGAACTGCACAGTTGTTCATGCATCCTCGTTACATGCATGGAGCTGCTACGAGTCCAGATGTACGTGTTTATGCATATGCTGCAGCTCAAGTAAAGAAAGCCATGGAGGTAACACATGAATTAGGAGGAGAAAACTTTGTCTTCTGGGGTGGAAGAGAAGGTTACCAAACTCTCTTGAATACTGATCTAAAGAAGGAGCTTGACCATATGGCTAAATTTCTTCAAGCAGCGGTGAACTGGAAGAAAACCATTGGCTTCAATGGGACCCTTCTAATTGAGCCTAAGCCACAAGAACCTACAAAACACCAGTATGATTGGGATGCTGCAACAACTATGGGCTTCCTACAAAGATATGGGCTTGCAGGAGAATTTAAATTAAATGTTGAGTGCAATCATGCAACCCTCTCTGGGCACAGCTGTCATCACGAGCTGGAAATAGCACGGATTTATGGGATGCTTGGAAACATTGATGCAAACACTGGAGATGCCCAAACAGGCTGGGATACTGATCAATTTCCTACGGATATTGGAGAAGCAACTTTAATTATGTTGACTGTTATAAAGAATGGTGGGCTTGCACCTGGTGGGTTCAACTTTGATGCAAAATTGCGGAGAGAGAGTGTAGATGTGGAAGATCTATTCATTGCTCATATATCGGGCATGGACACTCTTGCACGGGGCTTGAGAAATGCGGCTAAGCTCTTGCAGGATGGAAGAATGTCAGAGCTTGTTGCAAAACGTTATGAAACCTTCAATTCAAAACTAGGAGCTCTGATTGAGGATGGAGAGGTCAGTTTTGAGGAACTTGAAAAGAAAGCTCATGAATGGGGTGAACCTCCACTGTCATCAGGGAAGCAGGAACTTGCGGAGATGATTTTCCAGTCATACTTGTAA___TTAGAAACTGTTAATCATACTTGTAATTAGAAACTGTTCATATGTCGAGAGCAAATGGGAAGCATAGGATCAGCAATCGTTACTTTCTTATAAGTGGTTTAAAAGAATAGGAAACATGTAACGCATAATGCTCTGCACCTAGTTAACGATACGCGAATTGTTAGTTTGTCTTCTTCTGTTAGTGAGGTGGCTTTCAACATGTAATAAATGCATTTTCGGTAGTAACACGCATGCGGCCATCTGTCAAGATCAAATGGGAAGCACAGGATCAACCATGGTTACTTTCTTAGAAGTGGTTCAAAAGAATAGGAAACATGTAGCGCATAGTTAACGATACGCCGAATTTGTTAGTCTGTCTCCTTTCCATTGGACTTGCTATGCAATTAAGAAAATCACACGTTGCATGGATTATTTGCATTGAATTTTACTGTCAAAAGGTCATCTGCCATACTCATATTTCATTCTAGTGTTAAACTGAAGGTGGCTATTATGTAAAAGGTTAATTACTCTTGTTTTTAATCCCTCTGATCGGCGAGGTGCTCTAGGTTGGGTGAGGGAGATCTTACATGTATGGCTTGTAACACCAAAGAATTTAGTTTATATCTATTGTAATAGGCACATTACACGTTTAGTAATTTAACCAGGACAAACCACAATCCAGTTTACCGTGCTAGAAATTGGAAGGTTAACTAACACAACCTAAAGCATTAATATGTGATTAACGTGTATTTTTCAATGTACTATTTCTCTAGCAGTG

Fln Alignment:

Contig7200___MKDWLRFSVAFWHTFRGSGADPFGAPTKNWPWEDGTNSLAMALRRMKANFEFLTKLGVELWCFHDRDIAPDGKTLIESNANLDAVVALAKQLQEETGIHTLWGTAQLFMHPRYMHGAATSPDVRXXXXXXXXXXXAMEVTHELGGENFVFWGGREGYQTLLNTDLKKELDHMAKFLQAAVNWKKTIGFNGTLLIEPKPQEPTKHQYDWDAATTMGFLQRYGLAGEFKLNVECNHATLSGHSCHHELEIARIYGMLGNIDANTGDAQTGWDTDQFPTDIGEATLIMLTVIKNGGLAPGGFNFDAKLRRESVDVEDLFIAHISGMDTLARGLRNAAKLLQDGRMSELVAKRYETFNSKLGALIEDGEVSFEELEKKAHEWGEPPLSSGKQELAEMIFQSYL
B8LKP5______________MKDWLRFSVAFWHTFRGSGADPFGAPTKNWPWEDGTNSLAMALRRMKANFEFLTKLGVEMWCFHDRDIAPDGKTLMESNANLDAVVALAKQLQEETGIHTLWGTVQLFMHPRYMHGAATSPDARVYAYAAAQVKKAMEVTHELGGENFVFWGGREGYQTLLNTDLKKELDHMAKFLQAAVNWKKTIGFNGTLLIEPKPQEPTKHQYDWDAATTMGFLQRYGLAGEFKLNIECNHATLSGHSCHHELEMSRIYGMLGNIDANTGDAQTGWDTDQFLTDIGEATLVMLTVIKNGGLAPGGFNFDAKLRRESVDVEDLFIGHISGMDTLARGLRNAAKLLQDGKLSELVAKRYETLNSKLGALIEEEEVSFEELEKKAHEWGEPPLSSGKQELAEMIFQSYL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
2283	90	10			0.90298
2284	90	10			0.90298
2285	90	10			0.90298
2287		11	88		0.991528
2288	11	88			0.991528
2289		11		88	0.991528
2290		12	87		0.992554
2292		87	12		0.992554
2293		87	12		0.992554
2295	12	75			0.975346
2297	12			75	0.975346

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain