SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7176

Length: 1139 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7176

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor-like 2 [Arabidopsis thaliana] sp\|Q9ZPX1.1\|ARF5_ARATH RecName: Full=Probable ADP-ribosylation factor At2g18390 gb\|AAM22961.1\|AF486852_1 ARL2 G-protein [Arabidopsis thaliana] gb\|AAD15498.1\| putative ADP-ribosylation factor [Arabidops	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR006688	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G18390.1	TTN5, HAL, ARL2, ATARLC1 ADP-ribosylation factor family protein chr2:7988335-7989374 FORWARD LENGTH=185	87%
RefSeq	Arabidopsis thaliana	NP_179430.1	ADP-ribosylation factor-like 2 [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002310807.1	predicted protein [Populus trichocarpa]	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYD9

Fln msg:

Fln protein: MGLLSIIRKVKKKEKEMRILMVGLDNAGKTTIVMRINGEDTSNISPTLGFNIKTIEYKSYRLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKEELHNLLKEERLSGSSLLILANKQDIQGALRPADIAKVLNLEAMDNSRHWQIVGCSAYTGEGLLAGFDWLVGDIASRIYLLE*

Protein Length: 187

Fln nts: ATGGGGATTGTTTAACAAGGGGTTGATGCTGGGCCCCTTCGAATCATTGGCATTGAAAAATTCATTCGTTTCCCGTCTTCAAAAACATACTTTGCATTCAGAATCTGTAGCTCCTCCCGCCGAACAAGCAAACCAATAGTAGCAGCA_-_ATGGGGCTTCTCAGCATAATCAGAAAGGTCAAGAAAAAGGAAAAAGAGATGCGGATTCTCATGGTGGGTCTTGACAATGCAGGTAAGACTACTATCGTGATGCGAATCAATGGCGAGGACACTAGTAATATCAGTCCTACTCTTGGCTTCAACATTAAAACAATTGAATATAAGAGCTACCGACTCAATATTTGGGATGTTGGTGGGCAAAAAACTATACGATCATACTGGAGGAATTATTTTGAACAGACAGATGGGTTGGTGTGGGTAGTAGATAGCTCAGATCTTCGGCGGTTAGACGATTGCAAAGAGGAGCTCCATAATTTGTTGAAGGAAGAGAGATTGTCAGGTTCTTCCTTGTTGATATTAGCAAACAAACAAGATATTCAGGGCGCTCTTAGACCAGCAGACATTGCCAAGGTTCTAAATCTGGAGGCTATGGACAACAGCAGACACTGGCAAATAGTAGGGTGCAGTGCTTACACTGGTGAAGGATTGCTAGCAGGTTTTGATTGGCTTGTTGGTGACATAGCTTCACGCATATATCTCCTTGAGTAA___TGTATTGTATTTTTATGGAGTTATAATTCAAATACTTTTTGGATCCCTGAAGATAAGATAATATACGCAAATATTTAATTTGTACTGCAATCCATCTTTGTTGTTTAAGTCAGTGAAAAGAAGAATACCTTCTTATCTGTTCTTGCTTGACTCTTAAGATGTCTGTCATTATTTGTGGATTAGCTTCAAATTGCAAAATACTGTACATATTTATATGATTTCCTGCTTCTTTGGAGGCATAAGGGTTCTTAGTTGGGGTTTCCTTTAATTTCATTAAAGTGGATTTCTTGATGGTGGGTGGAAGATTGGGACTGTATCCTGGACGAGAATTATGCAAATGGACCTGGTGCTAATGTGAATTTCTTATTGTCTTTATCTTGGTGTCTGTCAGACTGTTCATGGCAGCTTAGCTATTAAATTGTTTTGATATGACA

Fln Alignment:

Contig7176___MGLLSIIRKVKKKEKEMRILMVGLDNAGKTTIVMRINGEDTSNISPTLGFNIKTIEYKSYRLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKEELHNLLKEERLSGSSLLILANKQDIQGALRPADIAKVLNLEAMDNSRHWQIVGCSAYTGEGLLAGFDWLVGDIASRIYLLE
A9NYD9______________MGLLSIIRKVKKKEKEMRILMVGLDNAGKTTIVMRINGEDTSSISPTLGFNIKTIEYKSYRLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKEELHNLLKEERLSGSSLLILANKQDIQGALRPADIAKVLNLEAMDNSRHWQIVGCSAYTGEGLLAGFDWLVGDIASRIYLLE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
553	14		85		0.993533
638	85		14		0.993533
649	11		88		0.923564
657		11		88	0.923564
666	11			88	0.923564
695	11			88	0.923564
696		88		11	0.923564
697	11	88			0.923564
712	14		85		0.993533
713		14		85	0.993533
772			40	60	1.0
804		20		80	0.995493
838		80		20	0.995493
1076	12	87			0.992554
1080	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain