SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7171

Length: 2392 nt

UniGene Fasta

>sp_v3.0_unigene7171
CGTCGTGACCTTGGCTGTCACTCAATTTTTATGATGAAAGATGTTCAGACAAGCGATGTGAGGATTTTGACGAAGGCCCCAATTTGCGGGAGCAAGCCTAGTTAGTTCCCTGTTGAGGGGCCTCTGGGACAGCACTACAAAATTCACGGCCCCTCTTACTCCCAATGCTTGTTGTAGATGACAGAATAAATTCTGGATTCGCTGTGCAATGATTTGACCGCATCTGTGAACAAATTACACCATCTTTTTTATATTTATACCTAAAATGAGCATGCCCAATATCCTTTTCTCGAGCTCCTGGATAATCATTCCCAAGGTTTAGCTTTTGGGCGCCTTTCGTTCAGGAGGCCCATCGAGATCATATTGTTTTGGGTTACGTGCAAAAACAATCACGCATCATGAGGTGGCTCAATAAGATTTTTAAAGGCTCTAATCACAGGATATCAGAGGGCCAATATCAGGGAGTATTTGCAGATGAAGATAGGGTTTGGGATATGCCTTCTGGCTCTTTGAATGGGCATGCACATAGTGGAAATGAGGATTTGGATCACGCTATTGCACTTTCTCTCTCCGAGGAAGAACAAAGAAAGGCGAATAGCGGAGGGGGCAGTTCTGAAGTGGAAGATGATGAAGAACTTGCTAGAGCTCTACAAGCAAGCTTGGACATTGGCTCCCCTCCACGTTCAAATCAAAGTCCTATTTATCCTTCGACATATGGTTATCCTACAGGATACAAGATTTGTGCTGGGTGCAATAATGAGATAGGCTATGGCCGCTTTTTGAGCTGTATGGGAGCTGTTTGGCATCCTCAGTGTTTTCGTTGTCATGCTTGTGGCGAGCCTATTTCAGAACACGAGTTTTCCATGTCAGGAAATGATCCATACCACAAATCCTGTTACAAGGAACGCTACCATCCAAAATGTGATGTCTGTAACCATTTTATACCAACAAATAGAGCTGGGCTAATTGAGTACAGAGCCCATCCATTTTGGGGACAGAGGTACTGTCCTTCGCATGAACATGATAACACTCCTCGGTGCTGCAGTTGTGAACGTATGGAGCCAAGGAATGTACAATATATTTCACTAGATGATGGTCGAAAACTCTGTCTTGAGTGCTTGGATTCAGCAATTATGGATACAAATGAATGCCAACCACTTTATATTGAAATTAGAGACTTCTATGAAGGCATGAATATGAGAATAAGCCAGCAAATTCCAATGCTGCTGGTTGAAAGGCAAGCACTGAATGAAGCCATGCAGGGTGAGAAGGAAGGAAGCCATCACATGCCAGAAACTAGAGGACTCTGCCTTTCAGAGGAACAGACTGTCAGCACTATTGCTAGAAGGCCTAGGATTGGAGGTAATCGCATTATAGACATGTTCACCGAATCCAGAAAACTTACCAGAAGATGTGAAGTCACAGCTATTCTCATTCTCTATGGTCTTCCCAGATTACTATCAGGTTCAATTTTGGCCCATGAGTTGATGCATGCATGGTTGCGCCTCAACGGTTTCCGTACTCTCAGTCCTGATGTTGAGGAAGGCATTTGTCAGGTTCTTTCACATATGTGGCTGGAATCAGAGGTCATGGCAGGATCTGGATCAAGTAGTCATGGAGCATCAACATCATCAGGAATATCTTCCTCCTCTTCATCTAAAAAAGGAGTCAGATCACAGTTTGAGAAGAAACTTGGGGAGTTCTTCATGCATCAAATTGCAATGGATTCTTCACCAGCATATGGAGATGGTTTCAGAGCTGGTAATGCAGCAATGCTTCAGTATGGTTTAAAAAGAACTTTGGATCATATTCGAATGACAGGCAACTTTCCTTAGGATTTTATCTTCTGTAAACTTATTGTGGATTCTAGATGTTTCGTCTTCCTTGCTCTATGGGCAAACGTGGCCCGATTGATGTATTCTATCAAAGTATTCTAATCAATAATACAAAAAGGTGCAGTATAGGTACTGATTATTGGGACTATTTATTTTCAGTGGTTCCTATTTTTTTGTCATGTTTTCGGTGTGAATGCAAAGGCAATTAGAAGAAGGATTCTTGATTTATAAGGCAGAATCATGAGTCATTTGGAAACAGGATGCCTGCTCCTTTCAGCTCAGCAAATTTATGTGGAACTGACGGAAAACTGTGGGGAAGATGCTTTCCCTGAACTACTTTTGTGGATAATTAATGGTCCAGATTCAAGGTAGTGAAATTTACTCTATCAGGCAACGCCTTGATTTAGTGATTAAAGACATGTTAAAAGTACAAAATGTGACTGATTTTCGAGGCCTAAAATGTTGTTTTCGAAGCAAATGGTGAAATAAAAGAGAAATTACGTATCTTCATATTAACATTGAAATGATGTGGTCAAATTTTGGGTTCTGACTTAGTG

Ace file of the UniGene sp_v3.0_unigene7171

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	LIM domain containing protein-like n=4 Tax=Oryza sativa RepID=Q5SMM0_ORYSJ	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin interacting motif	IPR003903	-	0.0	-
Sma3	Zinc finger, LIM-type	IPR001781	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G36860.1	LIM domain-containing protein chr4:17358580-17361189 REVERSE LENGTH=553	69%
RefSeq	Arabidopsis thaliana	NP_195404.6	LIM domain-containing protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002301214.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR15

Fln msg:

Fln protein: MRWLNKIFKGSNHRISEGQYQGVFADEDRVWDMPSGSLNGHAHSGNEDLDHAIALSLSEEEQRKANSGGGSSEVEDDEELARALQASLDIGSPPRSNQSPIYPSTYGYPTGYKICAGCNNEIGYGRFLSCMGAVWHPQCFRCHACGEPISEHEFSMSGNDPYHKSCYKERYHPKCDVCNHFIPTNRAGLIEYRAHPFWGQRYCPSHEHDNTPRCCSCERMEPRNVQYISLDDGRKLCLECLDSAIMDTNECQPLYIEIRDFYEGMNMRISQQIPMLLVERQALNEAMQGEKEGSHHMPETRGLCLSEEQTVSTIARRPRIGGNRIIDMFTESRKLTRRCEVTAILILYGLPRLLSGSILAHELMHAWLRLNGFRTLSPDVEEGICQVLSHMWLESEVMAGSGSSSHGASTSSGISSSSSSKKGVRSQFEKKLGEFFMHQIAMDSSPAYGDGFRAGNAAMLQYGLKRTLDHIRMTGNFP*

Protein Length: 480

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTATGATGAAAGATGTTCAGACAAGCGATGTGAGGATTTTGACGAAGGCCCCAATTTGCGGGAGCAAGCCTAGTTAGTTCCCTGTTGAGGGGCCTCTGGGACAGCACTACAAAATTCACGGCCCCTCTTACTCCCAATGCTTGTTGTAGATGACAGAATAAATTCTGGATTCGCTGTGCAATGATTTGACCGCATCTGTGAACAAATTACACCATCTTTTTTATATTTATACCTAAAATGAGCATGCCCAATATCCTTTTCTCGAGCTCCTGGATAATCATTCCCAAGGTTTAGCTTTTGGGCGCCTTTCGTTCAGGAGGCCCATCGAGATCATATTGTTTTGGGTTACGTGCAAAAACAATCACGCATC_-_ATGAGGTGGCTCAATAAGATTTTTAAAGGCTCTAATCACAGGATATCAGAGGGCCAATATCAGGGAGTATTTGCAGATGAAGATAGGGTTTGGGATATGCCTTCTGGCTCTTTGAATGGGCATGCACATAGTGGAAATGAGGATTTGGATCACGCTATTGCACTTTCTCTCTCCGAGGAAGAACAAAGAAAGGCGAATAGCGGAGGGGGCAGTTCTGAAGTGGAAGATGATGAAGAACTTGCTAGAGCTCTACAAGCAAGCTTGGACATTGGCTCCCCTCCACGTTCAAATCAAAGTCCTATTTATCCTTCGACATATGGTTATCCTACAGGATACAAGATTTGTGCTGGGTGCAATAATGAGATAGGCTATGGCCGCTTTTTGAGCTGTATGGGAGCTGTTTGGCATCCTCAGTGTTTTCGTTGTCATGCTTGTGGCGAGCCTATTTCAGAACACGAGTTTTCCATGTCAGGAAATGATCCATACCACAAATCCTGTTACAAGGAACGCTACCATCCAAAATGTGATGTCTGTAACCATTTTATACCAACAAATAGAGCTGGGCTAATTGAGTACAGAGCCCATCCATTTTGGGGACAGAGGTACTGTCCTTCGCATGAACATGATAACACTCCTCGGTGCTGCAGTTGTGAACGTATGGAGCCAAGGAATGTACAATATATTTCACTAGATGATGGTCGAAAACTCTGTCTTGAGTGCTTGGATTCAGCAATTATGGATACAAATGAATGCCAACCACTTTATATTGAAATTAGAGACTTCTATGAAGGCATGAATATGAGAATAAGCCAGCAAATTCCAATGCTGCTGGTTGAAAGGCAAGCACTGAATGAAGCCATGCAGGGTGAGAAGGAAGGAAGCCATCACATGCCAGAAACTAGAGGACTCTGCCTTTCAGAGGAACAGACTGTCAGCACTATTGCTAGAAGGCCTAGGATTGGAGGTAATCGCATTATAGACATGTTCACCGAATCCAGAAAACTTACCAGAAGATGTGAAGTCACAGCTATTCTCATTCTCTATGGTCTTCCCAGATTACTATCAGGTTCAATTTTGGCCCATGAGTTGATGCATGCATGGTTGCGCCTCAACGGTTTCCGTACTCTCAGTCCTGATGTTGAGGAAGGCATTTGTCAGGTTCTTTCACATATGTGGCTGGAATCAGAGGTCATGGCAGGATCTGGATCAAGTAGTCATGGAGCATCAACATCATCAGGAATATCTTCCTCCTCTTCATCTAAAAAAGGAGTCAGATCACAGTTTGAGAAGAAACTTGGGGAGTTCTTCATGCATCAAATTGCAATGGATTCTTCACCAGCATATGGAGATGGTTTCAGAGCTGGTAATGCAGCAATGCTTCAGTATGGTTTAAAAAGAACTTTGGATCATATTCGAATGACAGGCAACTTTCCTTAG___GATTTTATCTTCTGTAAACTTATTGTGGATTCTAGATGTTTCGTCTTCCTTGCTCTATGGGCAAACGTGGCCCGATTGATGTATTCTATCAAAGTATTCTAATCAATAATACAAAAAGGTGCAGTATAGGTACTGATTATTGGGACTATTTATTTTCAGTGGTTCCTATTTTTTTGTCATGTTTTCGGTGTGAATGCAAAGGCAATTAGAAGAAGGATTCTTGATTTATAAGGCAGAATCATGAGTCATTTGGAAACAGGATGCCTGCTCCTTTCAGCTCAGCAAATTTATGTGGAACTGACGGAAAACTGTGGGGAAGATGCTTTCCCTGAACTACTTTTGTGGATAATTAATGGTCCAGATTCAAGGTAGTGAAATTTACTCTATCAGGCAACGCCTTGATTTAGTGATTAAAGACATGTTAAAAGTACAAAATGTGACTGATTTTCGAGGCCTAAAATGTTGTTTTCGAAGCAAATGGTGAAATAAAAGAGAAATTACGTATCTTCATATTAACATTGAAATGATGTGGTCAAATTTTGGGTTCTGACTTAGTG

Fln Alignment:

Contig7171___MRWLNKIFKGSNHRISEGQYQGVFADEDRVWDMPSGSLNGHAHSGNEDLDHAIALSLSEEEQRKANXXXXXXXXXXXXXLARALQASLDIGSPPRSNQSPIYPSTYGYPTGYKICAGCNNEIGYGRFLSCMGAVWHPQCFRCHACGEPISEHEFSMSGNDPYHKSCYKERYHPKCDVCNHFIPTNRAGLIEYRAHPFWGQRYCPSHEHDNTPRCCSCERMEPRNVQYISLDDGRKLCLECLDSAIMDTNECQPLYIEIRDFYEGMNMRISQQIPMLLVERQALNEAMQGEKEGSHHMPETRGLCLSEEQTVSTIARRPRIGGNRIIDMFTESRKLTRRCEVTAILILYGLPRLLSGSILAHELMHAWLRLNGFRTLSPDVEEGICQVLSHMWLESEVMAXXXXXXXXXXXXXXXXXXXXXKKGVRSQFEKKLGEFFMHQIAMDSSPAYGDGFRAGNAAMLQYGLKRTLDHIRMTGNFP
B8LR15______________MRWLDKIFKGSNHRISEGQYQGVFADENSVWDMPSGSLDGHAHSGNEDLDHAIALSLSEEEQRKANNIGGSSEVDDDEELARALQASLDIGSPPRSNQSSIYPSTHAYPTGYKICAGCNTEIGYGRFLSCMGAVWHPQCFRCHACGEPISEHEFSMSGNDPYHKSCYKELYHPKCDVCSHFIPTNRAGLIEYRAHPFWGQRYCPSHEHDNTPRCCSCERMEPRNVQYISLDDGRKLCLECLDSAIMDTNECQPLYLEIRDFYEGMNMKINQQIPMLLVERQALNEAMQGEKEGSHHMPETRGLCLSEEQTVSSISRRPRIGGNRIIDMFTESKKLTRRCEVTAILILYGLPRLLTGSILAHELMHAWLRLNGFRTLSPDVEEGICQVLSHMWLESEVMAGSGSSSHGASTSSGISSSSSSKKGAKSQFEKKLGDFFMHQITMDSSPAYGDGFRAGNAAMLRYGLKRTLDHIRLTGNFP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
2336		67		30	1.0
2343		10		89	1.0
2355			10	90	0.90298
2359	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain