SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7170

Length: 2202 nt

UniGene Fasta

>sp_v3.0_unigene7170
ATGGGGAGGCCACAAACATTATTTTCAGGCCACCGCATGTTGTCATGTTGTGGGAAGACTTCAGTTAACCGGGTCAATATCTATCCCCACAACACCAATTTTTGAGCTTGGATTCAACTCCCAGAGGTGCGCGATAAGAATATAAATCAAGGATCTCCCATCCTCTATGGGGGCAAACACAGCAGCAACAATGGTGTCAGCTGCTGGAGCTCTAGATTCGGTGGGTGGGAAAGGGCAAGAGGCCATGGATATGGATAGATCGAAGCCAACGAAGAAGATTCCCAGAAACAAGTTTGTGATTGCATGTGCAGTGTTGGCCTCCACCAACTCAATTCTGTTCGGCTATGATGTCGGAGTGATGAGTGGCGCCGTTATCTTCATTAAAAAGGATCTGAAGATCAGCGACGTCCAAGAGGAGGTATTGATCGGATCGCTGAACATAATTTCCCTACTGGGATCTGCCTTGGCGGGTAGAACTTCGGACGCAATAGGGCGAAGATGGACAATGGCTCTGGCAGCTTTTATATTTCTGGTTGGGGCGCTTGTCATGGCTGTGTCTCCTTCCTTTGCATGGCTGATGGTGGGGAGATCCGTGGCCGGCATAGGAGTTGGATACGCCCTCCTCATAGCTCCGGTCTACACGGCCGAAGTGGCTCCCGCTGCTTCACGTGGCTCGCTCACATGTTTCCCTGAGATTTTCATTAACGTGGGAATTCTCATCGGTTACATTGCCAACTACGCTCTGCAAGGGCTACCCCCGCACTTGAACTGGAGAGTCATGATCGGTCTCGGGGCCGTTCCGCCGCTTTTCCTGGGGATAGCGGTGCTGATGATGCCCGAGTCACCGCGTTGGCTGCTTATGAGAGGCCGAAACGAGGACGCCATGAAAGTCCTGCTGAGGACTTCGGTGGACCAAGCGGAGGCCTCTGAGAGGCTGGAGCAGATTGTAGAAGGGATTCAATATGCTAAACAGAATGCGTTAGTCCACGAGAGTTCAAATCCTAACAAGACTTCAAACCCTAATAAGACCTCCAAGAATGATGGAGAGGGAAAATGGCGTGAGCTTTACAAGCCCTCAAAAGCCATCAGGCGCATGTTGATTATCGCGTTGGGAATTCAGTTTTTTCAGCAAGCTGGAGGCATCGATGCGACGGTTTATTACAGCCCGGTGACCTTCAAAACAGCTGGAATCAACAGCCAAGGCGGGATTTTGGGTGCAACAATGGCAGTAGGGTTTGCAAAAGCTGGATTTGTTGTGGTGGCGGCGGTTCTGATAGACAAAGTAGGCCGCAGGCCTTTGTTGCTGACAAGTGCAATTGGTTCGACTGTATCTCTCTTAGCTTTGGCCACAGCGTTGGCGGTTATAGGGAAGTCATCAACTGTGGGAATGGGGCGTGAAGTTGCTAGCTACCTGGCCGTAATCGCAGCCTGCGGTAATGTGGCATTTTTCTCAGTTGGAATGGGGCCTGTTAACTGGGTGCTGGGAGCCGAGATTTTCCCTCTTAGACTGCGGGCCAAAGCGGCCAGCCTTGGGGTGGCCGTTAACCGAGGCATGAGTGGGGTGGTCTCAATGACATTTCTCAGCATTTCCAATGCAATGACTGTGCCTGGAACGTTCTACCTCTTCGCAGCTGTTTCGGCTCTCTGTTCAATCTTCATATACTTCTGTGTACCGGAAACGAAAGGCAAAACCTTGGAAGAGATTGTGGAATCTTTCCACGTGAAACCTCAGGAATCTTTAGACAAAATGGCAACAGATCCGTCAGAGCTTGAGCTTGGTAACAGGAGGGGTGTTCCAGTGGAAGCAGAAACAGCCGTACCACACTTGCTAACAGGAGGGGTATCCCAGTGAAAGCAGAAACAGCCGTATCATGAACGTATTCTACTGAAAACTACGATATAACTACGATATATTTTATATGACCCGGGTATGTCCGAAGCTGCACCATAAAGAAAAGGGAAAATAGTTTGTCATATGTAGTCCATAGGGTTTGTGTATGTTTAAGTGCAAGTTGATGTAATGTATATTGTCGTTACTTACTTTTTTCTTGATTGTTTTGGATTTATTACGGGTGGTTGTGCGATTCGGATTCGGTCTCAGCCACAGCTGAAAAAAGTTAAAGGCTAACCATTTCTATCAATGTATACGAGATCTATATTTACGATTTTCTAATAAAAGCCACGTTTAAATTAGTGTAAAAA

Ace file of the UniGene sp_v3.0_unigene7170

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative polyol/monosaccharide transporter n=2 Tax=Vitis vinifera RepID=E3VWW0_VITVI	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G20780.1	Major facilitator superfamily protein chr2:8947496-8949170 REVERSE LENGTH=526	51%
RefSeq	Arabidopsis thaliana	NP_179671.2	putative polyol transporter 4 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002305016.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLD6

Fln msg:

Fln protein: MGANTAATMVSAAGALDSVGGKGQEAMDMDRSKPTKKIPRNKFVIACAVLASTNSILFGYDVGVMSGAVIFIKKDLKISDVQEEVLIGSLNIISLLGSALAGRTSDAIGRRWTMALAAFIFLVGALVMAVSPSFAWLMVGRSVAGIGVGYALLIAPVYTAEVAPAASRGSLTCFPEIFINVGILIGYIANYALQGLPPHLNWRVMIGLGAVPPLFLGIAVLMMPESPRWLLMRGRNEDAMKVLLRTSVDQAEASERLEQIVEGIQYAKQNALVHESSNPNKTSNPNKTSKNDGEGKWRELYKPSKAIRRMLIIALGIQFFQQAGGIDATVYYSPVTFKTAGINSQGGILGATMAVGFAKAGFVVVAAVLIDKVGRRPLLLTSAIGSTVSLLALATALAVIGKSSTVGMGREVASYLAVIAACGNVAFFSVGMGPVNWVLGAEIFPLRLRAKAASLGVAVNRGMSGVVSMTFLSISNAMTVPGTFYLFAAVSALCSIFIYFCVPETKGKTLEEIVESFHVKPQESLDKMATDPSELELGNRRGVPVEAETAVPHLLTGGVSQ*

Protein Length: 563

Fln nts: ATGGGGAGGCCACAAACATTATTTTCAGGCCACCGCATGTTGTCATGTTGTGGGAAGACTTCAGTTAACCGGGTCAATATCTATCCCCACAACACCAATTTTTGAGCTTGGATTCAACTCCCAGAGGTGCGCGATAAGAATATAAATCAAGGATCTCCCATCCTCT_-_ATGGGGGCAAACACAGCAGCAACAATGGTGTCAGCTGCTGGAGCTCTAGATTCGGTGGGTGGGAAAGGGCAAGAGGCCATGGATATGGATAGATCGAAGCCAACGAAGAAGATTCCCAGAAACAAGTTTGTGATTGCATGTGCAGTGTTGGCCTCCACCAACTCAATTCTGTTCGGCTATGATGTCGGAGTGATGAGTGGCGCCGTTATCTTCATTAAAAAGGATCTGAAGATCAGCGACGTCCAAGAGGAGGTATTGATCGGATCGCTGAACATAATTTCCCTACTGGGATCTGCCTTGGCGGGTAGAACTTCGGACGCAATAGGGCGAAGATGGACAATGGCTCTGGCAGCTTTTATATTTCTGGTTGGGGCGCTTGTCATGGCTGTGTCTCCTTCCTTTGCATGGCTGATGGTGGGGAGATCCGTGGCCGGCATAGGAGTTGGATACGCCCTCCTCATAGCTCCGGTCTACACGGCCGAAGTGGCTCCCGCTGCTTCACGTGGCTCGCTCACATGTTTCCCTGAGATTTTCATTAACGTGGGAATTCTCATCGGTTACATTGCCAACTACGCTCTGCAAGGGCTACCCCCGCACTTGAACTGGAGAGTCATGATCGGTCTCGGGGCCGTTCCGCCGCTTTTCCTGGGGATAGCGGTGCTGATGATGCCCGAGTCACCGCGTTGGCTGCTTATGAGAGGCCGAAACGAGGACGCCATGAAAGTCCTGCTGAGGACTTCGGTGGACCAAGCGGAGGCCTCTGAGAGGCTGGAGCAGATTGTAGAAGGGATTCAATATGCTAAACAGAATGCGTTAGTCCACGAGAGTTCAAATCCTAACAAGACTTCAAACCCTAATAAGACCTCCAAGAATGATGGAGAGGGAAAATGGCGTGAGCTTTACAAGCCCTCAAAAGCCATCAGGCGCATGTTGATTATCGCGTTGGGAATTCAGTTTTTTCAGCAAGCTGGAGGCATCGATGCGACGGTTTATTACAGCCCGGTGACCTTCAAAACAGCTGGAATCAACAGCCAAGGCGGGATTTTGGGTGCAACAATGGCAGTAGGGTTTGCAAAAGCTGGATTTGTTGTGGTGGCGGCGGTTCTGATAGACAAAGTAGGCCGCAGGCCTTTGTTGCTGACAAGTGCAATTGGTTCGACTGTATCTCTCTTAGCTTTGGCCACAGCGTTGGCGGTTATAGGGAAGTCATCAACTGTGGGAATGGGGCGTGAAGTTGCTAGCTACCTGGCCGTAATCGCAGCCTGCGGTAATGTGGCATTTTTCTCAGTTGGAATGGGGCCTGTTAACTGGGTGCTGGGAGCCGAGATTTTCCCTCTTAGACTGCGGGCCAAAGCGGCCAGCCTTGGGGTGGCCGTTAACCGAGGCATGAGTGGGGTGGTCTCAATGACATTTCTCAGCATTTCCAATGCAATGACTGTGCCTGGAACGTTCTACCTCTTCGCAGCTGTTTCGGCTCTCTGTTCAATCTTCATATACTTCTGTGTACCGGAAACGAAAGGCAAAACCTTGGAAGAGATTGTGGAATCTTTCCACGTGAAACCTCAGGAATCTTTAGACAAAATGGCAACAGATCCGTCAGAGCTTGAGCTTGGTAACAGGAGGGGTGTTCCAGTGGAAGCAGAAACAGCCGTACCACACTTGCTAACAGGAGGGGTATCCCAGTGA___AAGCAGAAACAGCCGTATCATGAACGTATTCTACTGAAAACTACGATATAACTACGATATATTTTATATGACCCGGGTATGTCCGAAGCTGCACCATAAAGAAAAGGGAAAATAGTTTGTCATATGTAGTCCATAGGGTTTGTGTATGTTTAAGTGCAAGTTGATGTAATGTATATTGTCGTTACTTACTTTTTTCTTGATTGTTTTGGATTTATTACGGGTGGTTGTGCGATTCGGATTCGGTCTCAGCCACAGCTGAAAAAAGTTAAAGGCTAACCATTTCTATCAATGTATACGAGATCTATATTTACGATTTTCTAATAAAAGCCACGTTTAAATTAGTGTAAAAA

Fln Alignment:

Contig7170___MVSAAGALDSVGGKGQEAMDMDRSKPTKKIPRNKFVIACAVLASTNSILFGYDVGVMSGAVIFIKKDLKISDVQEEVXXXXXXXXXXXXXXXXGRTSDAIGRRWTMALAAFIFLVGALVMAVSPSFAWLMVGRSVAGIGVGYALLIAPVYTAEVAPAASRGSLTCFPEIFINVGILIGYIANYALQGLPPHLNWRVMIGLGAVPPLFLGIAVLMMPESPRWLLMRGRNEDAMKVLLRTSVDQAEASERLEQIVEGIQYAKQNALVHEXXXXXXXXXXXXXXXXDGEGKWRELYKPSKAIRRMLIIALGIQFFQQAGGIDATVYYSPVTFKTAGINSQGGILGATMXXXXXXXXXXXXXXXLIDKVGRRPLLLTSAIGXXXXXXXXXXXXXXIGKSSTVGMGREVASYLAVIAACGNVAFFSVGMGPVNWVLGAEIFPLRLRAKAASLGVAVNRGMSGVVSMTFLSISNAMTVPGTFYLFAAVSALCSIFIYFCVPETKGKTLEEIVESFHVKPQESLDKMATDPSELELGNRRGVPVEAETAV
B8LLD6______________MVSAAGTLDSVGGREPVAMEMDNSKPRKKIPRNKFVIACAVLASTNSILFGYDVGVMSGAVIFIKKDLKISDVQEEVLIGSLNIISLVGAALAGRTSDAIGRRWTMALAAFIFLVGALVMAVSPSFAWLMVGRSVAGIGVGYALLIAPVYTAEVAPAASRGCLTCFPEIFINVGILIGYIANYALAGLPGNVNWRVMLGVGAVPPLFLGIAVLMMPESPRWLVMRNRNDDAMKVLLRTSVNQAEASERLDQIMEGIRYAQVNASVKKSSNPNEISKS------DGEGKWHELYRPSRAIRRMLIIALGIQFFQQAGGIDATVYYSPVTFKTAGIKSQEGILGATMAVGFAKAGFVIVAAFLIDKVGRRPLLLTSAIGSTVSLVALASALAIIGKKSTVGMGSEAASYLAVIAACSNVAFFSVGMGPVNWVLGAEIFPLRLRAKAASLGVGVNRGMSGVVSMTFISISNAITVPGTFYLFAGVSALCSIFIYFCVPETKGKTLEEIVESFHVKARGSPDKTAMGPSELELGNSRAIPVKAETAV

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
170	33		66		1.0
172			66	33	1.0
174	16	50		16	0.988986
313	30		70		1.0
396	90		10		0.90298
617	30		70		1.0
619	30	70			1.0
620		70		30	1.0
699	14			85	0.993533
779	88		11		0.923564
1113	14		85		0.993533
1114	85	14			0.993533
1630	88	11			0.923564
1631		11	88		0.923564
1633		11		88	0.923564
1634	11		88		0.923564
1789	11		88		0.923564
1817	6		93		0.999999
1864	5		94		0.999996
1939	93	6			0.999999
1961	87		4		0.999414
1981	4		95		0.996599
1983		95		4	0.996252
1994	7		92		0.999999
2042	3			84	1.0
2134		4		95	0.997218
2197		13		86	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain