SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7169

Length: 1181 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7169

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cysteine protease [Gossypium hirsutum]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Sma3	Cysteine proteinase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	2.374e-15	-
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	4.361e-38	-

Source	Gene names
Sma3	AT4g23520; AsNODf32; At1g06260; At1g09850; At1g20850; At1g47128; At3g19390; At3g19400; At3g19400/MLD14.12; At4g35350; At4g36880; At5g43060; At5g43060/MMG4.7; At5g45890; BoCP3; BrCP3; C14; C7A10.480; CEP1; CHLREDRAFT_206048; CP1; CP2; CP3; CPRF; CPRZ; CYS1

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	senescence-associated vacuole	GO:0010282	Cellular Component	-
Sma3	cytoplasmic vesicle	GO:0031410	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	developmental programmed cell death	GO:0010623	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	-
Sma3	Granulin	IPR000118	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR018069	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G09850.1	XBCP3 xylem bark cysteine peptidase 3 chr1:3201848-3203875 FORWARD LENGTH=437	55%
RefSeq	Arabidopsis thaliana	NP_563855.1	xylem bark cysteine peptidase 3 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002317418.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P285

Fln msg: STOP codon was not found. Distance to subject end: 8 aas,

Fln protein: MGYSCYLCSVVSLLLLASSWSVDAWHSFSILEYEAEDLLSEDRLLRLFESWQSKHGKLYHSLQEEVKRLEIFKKNLDYIEAHNRNRRSSKKRSGHWLGLNKFADLTNEEFKAIYSKKSKKPAKSPLQLERPRLDTCDAPSSLDWRKKGVVTAVKNQGDCGSCWSFSSTGAIEGINAISTGDLISLSEQELVDCDSTNDGCDGGYMDYAFEWVIQNGGIDTEADYPYTGEDGTCNTTKEGYKVVTIDGYTDVAETDAAVLCAVVQQPVSVGMDGSAIDFQLYSGGIYDGDCSSNPDDIDHAVLIVGYSSEDDVDYWIVKNTWGTDWGLDGYFYIERNTDIEYGVCAINAMASYPTKEETSPGPEPSPSSTPP

Protein Length: 372

Fln nts: CGTCGTGTCCTGATGCATAACCATATTTAGGTCTTCTGTTTTCCTCACTGGACACAGATAATTTACC_-_ATGGGCTATAGCTGTTATCTGTGCAGTGTGGTGTCTCTCCTCCTCCTGGCATCTTCTTGGTCAGTGGATGCATGGCACTCATTTTCAATTCTGGAATATGAGGCTGAGGACCTCCTTTCTGAAGACAGATTGTTGAGACTTTTTGAGTCATGGCAGAGCAAACATGGCAAGCTTTACCACAGCTTGCAGGAGGAAGTCAAGAGGCTGGAAATCTTCAAGAAGAATCTGGACTACATTGAGGCTCACAACAGAAACAGAAGAAGCAGCAAGAAGCGTTCCGGCCACTGGTTGGGTCTCAATAAGTTCGCCGATCTGACGAATGAGGAGTTCAAGGCTATTTATTCCAAAAAGTCCAAGAAGCCTGCAAAATCTCCTTTACAGTTGGAGCGGCCTCGGCTTGATACATGTGATGCTCCTTCGTCTCTTGATTGGAGAAAGAAGGGCGTTGTCACAGCAGTCAAGAATCAAGGGGATTGTGGAAGTTGTTGGTCATTCTCATCAACGGGAGCAATAGAAGGGATCAATGCAATATCAACAGGGGACCTTATAAGCTTGTCTGAACAAGAGTTGGTTGATTGTGATTCAACCAATGATGGGTGTGATGGAGGTTATATGGATTATGCGTTTGAATGGGTAATACAAAATGGCGGCATTGACACAGAAGCAGACTACCCATACACTGGTGAGGATGGTACTTGCAACACTACAAAGGAAGGATACAAAGTGGTCACCATAGACGGTTACACTGACGTGGCAGAAACCGACGCCGCAGTCCTGTGTGCTGTTGTCCAACAACCAGTCAGCGTCGGAATGGATGGCTCCGCCATCGACTTTCAGCTCTACAGCGGGGGGATATACGATGGTGATTGTTCGAGCAATCCAGACGACATCGACCACGCAGTACTTATCGTCGGCTATTCCTCTGAAGACGATGTGGACTACTGGATCGTCAAGAATACATGGGGTACAGATTGGGGACTGGATGGATACTTTTACATAGAGAGAAACACAGATATTGAATATGGCGTCTGCGCTATCAATGCAATGGCCTCCTATCCCACCAAGGAGGAAACCTCGCCCGGTCCCGAACCATCCCCTTCCTCGACACCACCAC

Fln Alignment:

Contig7169___WQSKHGKLYHSLQEEVKRLEIFKKNLDYIEAHXXXXXXXXXXXGHWLGLNKFADLTNEEFKAIYXXXXXXXXXXXLQLE------RPRL--------DTCDAPSSLDWRKKGVVTAVKNQGDCGSCWSFSSTGAIEGINAISTGDLISLSEQELVDCDSTNDGCDGGYMDYAFEWVIQNGGIDTEADYPYTGEDGTCNTTKEGYKVVTIDGYTDVAETDAAVLCAVVQQPVSVGMDGSAIDFQLYSGGIYDGDCSSNPDDIDHAVLIVGYSSEDDVDYWIVKNTWGTDWGLDGYFYIERNTDIEYGVCAINAMASY
A9P285______________WLGRHGKLYGSHEEKARRLQIFRTNLQYIHAHNKNSNSSFR-----LGLNKFADLTNEEFKTRYFGKNSKQWRDRRRTELEGAELRPVLKQTVGSQSSSCSIASSLDWRKKGAVTGVKDQAQCGSCWAFSTTGAIEGVNFISTGKLVSLSEQELVACDATNYGCEGGDMDYAFTWVIQNGGIDTEKDYSYTGVDSTCNTNKEAKKIVSIDGYTDVSPDDSALLCAAGSQPVSVGIDGSAIDFQLYTGGIYDGDCSGNPDDIDHAVLVVGYSAKNGKDYWIVKNSWGTDWGLEGYFYILRNTELPYGVCAINAMASY

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
626	33			66	0.997452
627	33	66			0.997452
631	66			33	0.997452
742		83		16	0.994512
744		83		16	0.994512
755	16		83		0.994512
832		16	83		0.994512
967		66		33	1.0
1028	16			83	0.994512
1032			83	16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain