SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7164

Length: 2086 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene7164
ATGGGGGCAATTGGTTCCATCACTCGAGAGTTCCTCTCTCAGCTGTTTTCTAATTCTGGACTAAACGAGGGTGCAGGAGGCAGCCAGTTGAAACAGTGGCAGAGTGGGGGTGAACATGCAACTTAGTGGGAGCACGGACCCGCTGTGCAAACACACGCATAGCTGGAAGTGCTACTAACGAGTAAATACTACGAAGCCATTCTGTCTCTGAATTCATCCGACTAATTTTGGGGTGCAACCATTTGCCAGGGGCCCTCGATTAGACGGAGGGTGGAATGGAAGAATCGGGCAATTCACTGACCTCTGGTCCGGATGGAAGTAAGCGAAGAGTATCTTATTTTTATGATTCAGACATCGGGAACTACTACTACAGTCAGGGCCACCCGATGAAGCCACATCGAATCAGAATGGCTCACAGTCTGATAGTTCACTATGCCCTGGATGAGAAGATGGAGGTTTGTAGACCTAATCTTCTACAGAGCAGAGAGCTTAGAGTATTTCATGCAGATGATTACATATCGTTTCTTCAGTCGGTCACTCCTGAAACTCAACACGAACAGCTACGACAATTAAAGAGATTTAACGTGGGGGAGGATTGCCCTGTTTTTGATGGGCTATACAATTTCTGTCAGACCTATGCAGGGGGCTCCGTGGGAGCAGCTATCAAACTTAATAACAAGGAAGCAGATATTGCCATTAATTGGTCTGGTGGTCTCCACCATGCTAAGAAGTGCGAGGCATCTGGCTTTTGCTATGTAAATGACATTGTCTTGGCTATTCTTGAACTTCTCAAGGTCCATCAACGAGTGCTTTATATTGATATTGATATTCATCACGGGGATGGTGTGGAGGAGGCCTTCTACAGTACTGACCGGGTCATGTCTGTGTCATTTCACAAGTTTGGAGACTACTTCCCAGGCACAGGCCACCTTAAAGATGTAGGATACGGGAAAGGGAAGTATTATTCGTTAAATGTTCCTTTGAATGATGGAATTGATGACGAGAGCTACAAGAATCTCTTTAGGCCTATAATCCAGAAGGTAATGGAAATATATCAGCCGGAAGCTGTTGTCTTGCAATGCGGAGCAGATTCTCTGTCAGGCGATAGGCTAGGTTGTTTTAATTTATCAGTCAAAGGACATGCAGACTGTGTTCGATTTCTTCGGTCATTTAATGTTCCATTGGTGCTTGTTGGAGGCGGTGGTTACACCATTCGCAATGTTGCCCGCTGTTGGTGTTATGAGACTGCAGTTGCTGTAGGTGTGGAACCCCAAGATAAATTGCCTTACAATGAGTACTATGAATATTTTGGGCCAGATTATACTCTCCATGTGGCTCCTAGCAACATGGAGAATCAGAATTCAGCCAAGGAATTAGCAAAAATAAGAAACACATTGCTGGAACAATTGAAACGAATACAACATGTTCCCAGTGTGCCATTCCAAGAAAGGCCACCAGACACCAAGTTTCCTGAAGAGGATGAAGAGGATTATGAAAAGCGACCTAAAGGTCATAAATGGGGTGGAGAATACTTTGGTTCGGAATCCGATGAAGAACAAAAACCTCAGAATCGTGATATAGATATTTCGGACAAACCTGGCATCAGAAGGCAGTCACCTCCTAATGTTGAAGCGGCCAAAAAAATAAAGTAGAAGAAGAAGATGGAGACGTTGGAATAGTTAATGAGAACGATGGTGCAAAGTGGCCATTGGGTGAAGCTGGATAAAAAGTATATTATGGAGGAAATAAGCAGGAGTTTCAGATCATTTGCATAATTCCAAGAAGATTATTTTTCTCCGGAAGCCAAAGAGCTACCGGGAATGGAAATTTCAAATGGTCATTTCTATTTCTCTAATTTCCAGTCAGATGGAATTGTACTTCTATCTTCATAGACTTCAAGGCTATTGTGTACATAAAGAAGGCAGATAATAATAAAATTTTGTCAGTTTTATTGAATGAAATTCCCCATAATGTTTTACTATTCCGTCTGGGCTTTGAGATGTACGTTAATTGGTCATTTAAGACGACTCAGTTACTTAGAAATCCACAAGTGGCATAGTACAAACATAAATATAAAGCTTTTTTC

Ace file of the UniGene sp_v3.0_unigene7164 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Sma3	Histone deacetylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone deacetylase.	EC:3.5.1.98	-	3.117e-12	-

Source	Gene names
Sma3	AT3G44680; AT5G63110; At3g44680; At4g38130; At5g35600; B1307A11.3-1; B1307A11.3-2; B1307A11.3-3; CHLREDRAFT_103457; CHLREDRAFT_121526; CHLREDRAFT_137868; F20D10.250; GSVIVT00016005001; GSVIVT00018995001; GSVIVT00022058001; GSVIVT00022343001; GSVIVT0003631

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	histone deacetylase activity	GO:0004407	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	basal transcription repressor activity	GO:0017163	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	jasmonic acid and ethylene-dependent systemic resistance	GO:0009861	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3	histone acetylation	GO:0016573	Biological Process	-
Sma3	histone deacetylation	GO:0016575	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Histone deacetylase superfamily	IPR000286	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Histone deacetylase	IPR003084	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38130.1	HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 histone deacetylase 1 chr4:17896493-17899057 REVERSE LENGTH=501	71%
RefSeq	Arabidopsis thaliana	NP_001078511.1	histone deacetylase 1/2 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002322192.1	histone deacetylase, partial [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP03

Fln msg: your sequence is longer than subject: 459 - 102

Fln protein: MEESGNSLTSGPDGSKRRVSYFYDSDIGNYYYSQGHPMKPHRIRMAHSLIVHYALDEKMEVCRPNLLQSRELRVFHADDYISFLQSVTPETQHEQLRQLKRFNVGEDCPVFDGLYNFCQTYAGGSVGAAIKLNNKEADIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKVHQRVLYIDIDIHHGDGVEEAFYSTDRVMSVSFHKFGDYFPGTGHLKDVGYGKGKYYSLNVPLNDGIDDESYKNLFRPIIQKVMEIYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCVRFLRSFNVPLVLVGGGGYTIRNVARCWCYETAVAVGVEPQDKLPYNEYYEYFGPDYTLHVAPSNMENQNSAKELAKIRNTLLEQLKRIQHVPSVPFQERPPDTKFPEEDEEDYEKRPKGHKWGGEYFGSESDEEQKPQNRDIDISDKPGIRRQSPPNVEAAKKIK*

Protein Length: 460

Fln nts: ATGGGGGCAATTGGTTCCATCACTCGAGAGTTCCTCTCTCAGCTGTTTTCTAATTCTGGACTAAACGAGGGTGCAGGAGGCAGCCAGTTGAAACAGTGGCAGAGTGGGGGTGAACATGCAACTTAGTGGGAGCACGGACCCGCTGTGCAAACACACGCATAGCTGGAAGTGCTACTAACGAGTAAATACTACGAAGCCATTCTGTCTCTGAATTCATCCGACTAATTTTGGGGTGCAACCATTTGCCAGGGGCCCTCGATTAGACGGAGGGTGGA_-_ATGGAAGAATCGGGCAATTCACTGACCTCTGGTCCGGATGGAAGTAAGCGAAGAGTATCTTATTTTTATGATTCAGACATCGGGAACTACTACTACAGTCAGGGCCACCCGATGAAGCCACATCGAATCAGAATGGCTCACAGTCTGATAGTTCACTATGCCCTGGATGAGAAGATGGAGGTTTGTAGACCTAATCTTCTACAGAGCAGAGAGCTTAGAGTATTTCATGCAGATGATTACATATCGTTTCTTCAGTCGGTCACTCCTGAAACTCAACACGAACAGCTACGACAATTAAAGAGATTTAACGTGGGGGAGGATTGCCCTGTTTTTGATGGGCTATACAATTTCTGTCAGACCTATGCAGGGGGCTCCGTGGGAGCAGCTATCAAACTTAATAACAAGGAAGCAGATATTGCCATTAATTGGTCTGGTGGTCTCCACCATGCTAAGAAGTGCGAGGCATCTGGCTTTTGCTATGTAAATGACATTGTCTTGGCTATTCTTGAACTTCTCAAGGTCCATCAACGAGTGCTTTATATTGATATTGATATTCATCACGGGGATGGTGTGGAGGAGGCCTTCTACAGTACTGACCGGGTCATGTCTGTGTCATTTCACAAGTTTGGAGACTACTTCCCAGGCACAGGCCACCTTAAAGATGTAGGATACGGGAAAGGGAAGTATTATTCGTTAAATGTTCCTTTGAATGATGGAATTGATGACGAGAGCTACAAGAATCTCTTTAGGCCTATAATCCAGAAGGTAATGGAAATATATCAGCCGGAAGCTGTTGTCTTGCAATGCGGAGCAGATTCTCTGTCAGGCGATAGGCTAGGTTGTTTTAATTTATCAGTCAAAGGACATGCAGACTGTGTTCGATTTCTTCGGTCATTTAATGTTCCATTGGTGCTTGTTGGAGGCGGTGGTTACACCATTCGCAATGTTGCCCGCTGTTGGTGTTATGAGACTGCAGTTGCTGTAGGTGTGGAACCCCAAGATAAATTGCCTTACAATGAGTACTATGAATATTTTGGGCCAGATTATACTCTCCATGTGGCTCCTAGCAACATGGAGAATCAGAATTCAGCCAAGGAATTAGCAAAAATAAGAAACACATTGCTGGAACAATTGAAACGAATACAACATGTTCCCAGTGTGCCATTCCAAGAAAGGCCACCAGACACCAAGTTTCCTGAAGAGGATGAAGAGGATTATGAAAAGCGACCTAAAGGTCATAAATGGGGTGGAGAATACTTTGGTTCGGAATCCGATGAAGAACAAAAACCTCAGAATCGTGATATAGATATTTCGGACAAACCTGGCATCAGAAGGCAGTCACCTCCTAATGTTGAAGCGGCCAAAAAAATAAAGTAG___AAGAAGAAGATGGAGACGTTGGAATAGTTAATGAGAACGATGGTGCAAAGTGGCCATTGGGTGAAGCTGGATAAAAAGTATATTATGGAGGAAATAAGCAGGAGTTTCAGATCATTTGCATAATTCCAAGAAGATTATTTTTCTCCGGAAGCCAAAGAGCTACCGGGAATGGAAATTTCAAATGGTCATTTCTATTTCTCTAATTTCCAGTCAGATGGAATTGTACTTCTATCTTCATAGACTTCAAGGCTATTGTGTACATAAAGAAGGCAGATAATAATAAAATTTTGTCAGTTTTATTGAATGAAATTCCCCATAATGTTTTACTATTCCGTCTGGGCTTTGAGATGTACGTTAATTGGTCATTTAAGACGACTCAGTTACTTAGAAATCCACAAGTGGCATAGTACAAACATAAATATAAAGCTTTTTTC

Fln Alignment:

Contig7164___IRNTLLEQLKRIQHVPSVPFQERPPDTKFPEEDEEDYEKRPKGHKWGGEYFGSESDEEQKPQNRDID
B8LP03______________MRNVLLEQLSRIQHIPSVPFQERPPDTEFHDEEEEDMEKRSKCRIWDGEYFGSESEEDGKPPRCDAD

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
267	12			87	0.992554
269		87	12		0.992554
270		87		12	0.992554
292	57	42			1.0
485			80	20	0.995493
590	20	80			0.995493
591	20			80	0.995493
593			20	80	0.995493
824		87	12		0.999964
1214		75		25	0.996473
1404	12		87		0.992554
1405	12	87			0.992554
1488	10		90		0.90298
1489			90	10	0.90298
1491		90		10	0.90298
1507		11		88	0.923564
1517		33		66	1.0
1519	90		10		0.90298
1837		66		33	1.0
1976		16		83	0.994512
2021		20		80	0.995493
2023		20	80		0.995493
2024	20			80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
425	436	TCT TCT TCT TCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain