SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7153

Length: 1754 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7153

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dynamin central region; Dynamin GTPase effector [Medicago truncatula]	-	-	0.0	40%
FL-Next	sp=Dynamin-related protein 3A; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	37%
Sma3	Dynamin, putative	-	-	1.536e-07	-

Source	Gene names
Sma3	ADL2; ADL2A; ADL2B; At2g14120; At4g33650; DRP3A; DRP3B; GSVIVT00001878001; GSVIVT00032811001; OSJNBa0072D21.2; Os04g0381000; OsI_15615; OsJ_14527; PHYPADRAFT_130413; PHYPADRAFT_142116; PHYPADRAFT_169834; POPTRDRAFT_1082232; POPTRDRAFT_920707; RCOM_0449340

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	phosphatidylinositol binding	GO:0035091	Molecular Function	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	peroxisome fission	GO:0016559	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33650.2	DRP3A dynamin-related protein 3A chr4:16161073-16166587 FORWARD LENGTH=809	4.0e-37	67%
RefSeq	Arabidopsis thaliana	NP_567931.1	dynamin-related protein 3A [Arabidopsis thaliana]	6.0e-37	67%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q8S944

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 43 aas, putative chimeric sequence, your sequence is shorter than subject: 339 - 808

Fln protein: LEEVVGSLLRECLVPTETMVRYLIEMEMDYINTSHPSFIGGSKAMAIVAQQQQKRSLVGSVPTTKTKEADCDRVPAIDKFQKSRHILARAGAPGFVANNVIRQDKSGANGNTYYGNCGISSIFGIADSIASGNHGELVPSAECGELIPPSECGESIPSSDHEELISSADHEEEIPSVDHWESTPSVNGGESFEFGNGSFVTNENSGHAHNVGHLHDSSMIQLKEPPAVLSSTEAQSELVGIGIGVTKMLLRSYYDIVRKNIQDKVPKAIMHFLVNRAKRELYNVFIKNLYREDLFAEMLEEREDIASRRKQCNELLLALQQAVRTLEELPLDLDSLSK*

Protein Length: 340

Fln nts: GCCTTGAAGAAGTTGTAGGCTCTTTATTACGTGAATGCTTGGTGCCAACTGAGACAATGGTTCGGTACCTTATTGAAATGGAGATGGACTACATCAATACTTCACATCCTTCATTTATTGGTGGCAGCAAAGCAATGGCCATTGTTGCACAACAACAGCAGAAAAGATCCTTAGTGGGTTCAGTGCCTACTACTAAAACCAAGGAAGCTGATTGTGATCGAGTGCCAGCAATAGATAAATTCCAAAAGTCACGGCATATACTTGCAAGGGCTGGTGCACCTGGGTTTGTCGCAAACAATGTTATACGTCAAGATAAATCAGGAGCCAATGGGAATACATATTATGGAAATTGTGGTATATCATCCATTTTTGGAATTGCGGATTCAATTGCATCTGGCAATCATGGGGAGTTGGTTCCCTCTGCTGAATGTGGAGAGTTGATTCCACCTTCTGAGTGTGGAGAGTCGATTCCATCTTCTGATCACGAGGAGTTGATTTCGTCTGCCGATCATGAAGAGGAAATTCCATCTGTTGATCATTGGGAGTCAACTCCATCTGTTAATGGTGGGGAGTCATTTGAATTTGGCAATGGTAGTTTTGTAACCAATGAAAATAGTGGCCATGCACATAATGTGGGGCACCTTCATGATTCTTCCATGATCCAGTTGAAAGAGCCTCCTGCTGTATTGAGTTCTACTGAAGCACAATCTGAATTGGTGGGAATTGGAATAGGCGTTACAAAAATGCTTTTGAGGTCATATTATGATATTGTTAGAAAAAATATACAGGACAAAGTGCCTAAAGCGATCATGCACTTCCTGGTGAATCGTGCGAAGCGTGAATTGTACAATGTTTTCATAAAAAATCTGTACAGGGAGGACTTATTTGCCGAGATGCTAGAGGAACGAGAGGATATAGCATCAAGAAGGAAACAGTGCAATGAACTCCTTCTAGCTCTGCAGCAAGCTGTCAGAACACTCGAGGAGTTACCCCTAGACCTTGACTCACTATCAAAATAA___TCAAAACCGCGCAGAGTTACCTGATCATTGATATCCATGGTTTTGTTCCATCGATTTATTCGACTGATGGCAATTATAACTGACTTGGGTTGTGGTTGCATATTGCTTCACATTTGGGTTTTACCAAGAAATATGTTATGCTGTGAATTACCCTCTAGAAGATGAATCTTCCCCATTGAGTTCTGCAGTATGGCACAATGAAGCAGGGAAGATTCCAAATGGAACAGGATACCTTGCTGCCATTAAATGAATAATGTGAAGCACAGTCGTGATCCCTTTTCCTTCACAGCATAGTGAGCTGCTCCGGCATTCAGTTTGAGTTGCGTGTAACCCTGTAAGTGTCATTGTAAGCTGCTTTGGCATTCATTTCGAGATGCGTGAAACCCCATAATTCTCAAAGGTTGACTGGAGGTTGAGCTCTGTATCTTTATAATGTTTCACCAGATACATGATTTCTAGATCCAAGGAATTATTTTAAATGCGTATCGAAATTGTAATTTAAATGATATGAAGTTGCAAGTGTAGTTGTTCATATTCATTATTTTTTGGGAACATCCCAGCAGTTTAAAATTCTGTATTCACTAAATATATGAGACTACATTGTAACCACACATTCAAAGAGAATCCAGAATTTTCAATAGGTTTAATTTCTGATTATGCCAGATCCTTCCACTCCACAGGGGTACTAACTTCAAATTGCTTTGTTCTTTGGAGTTTATTTTGAGTTTAAGATGA

Fln Alignment:

Contig7153___LEEVVGSLLRECLVPTETMVRYLIEMEMDYINTSHPSFIGGSKAMAIVAQQQQKRSLVGSVPTTKTKEADCDRVPAIDKFQKSRHILARAGAPGFVANNVIRQD--KSGANGNTYYGNCGISSIFGIADSIA
Q8S944______________MDEVIGDFLREGLEPSEAMIGDIIDMEMDYINTSHPNFIGGTKAVE-AAMHQVKSSRIPHPVARPKDTVEPDRTSSSTSQVKSRSFLGRQANGIVTDQGVVSADAEKAQPAANASDTRWGIPSIFRGGDTRA

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
326		33	66		1.0
403	85		14		0.993533
418	33		66		1.0
452	16	83			0.994512
454			16	83	0.994512
455		83	16		0.994512
456			16	83	0.994512
462			16	83	0.994512
497		14		85	0.993533
504	14		85		0.993533
509		85		14	0.993533
514		85		14	0.993533
524	71	14			0.984337
638			20	80	0.995493
714		16		83	0.994512
718		33		66	1.0
726	66	33			1.0
858	50			50	1.0
860			16	83	0.994512
861			16	83	0.994512
862		83	16		0.994512
865	66	33			1.0
872	25	75			1.0
873		25		75	1.0
874	25		75		1.0
875		25		75	1.0
880		12	75	12	0.975346
881			87	12	0.992554
882			87	12	0.992554
984		75		25	1.0
1035		87		12	0.992554
1036			87	12	0.992554
1040	87			12	0.992554
1053			25	75	1.0
1070		28	71		1.0
1131		87		12	0.992554
1148	70		30		1.0
1184	66		25		1.0
1279	75		25		1.0
1280		37		62	1.0
1374	80		20		0.995493
1437	33		66		1.0
1466	14	85			0.993533
1477	42		57		1.0
1478		16		83	0.994512
1508			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain