SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7136

Length: 2147 nt

UniGene Fasta

>sp_v3.0_unigene7136
ATGGGAGGGGCTAAAACAATAGAGGGTGATTTGGAGGAGGCTTTGTTCAAGGCGGGAGCAATCTCAGAAGACCAGTATGGGGACCCCAGGAAAGTGGATTGGATGAGGTCTGCCAGAACAGACAAGGGGGTAAGTGCTGTTGGTCAGGTGGTTTCTGGGAGATTTTTCATAGACCCACCAGGGCTTGTGGAGAGAGTCAATTCCCACCTCCCAGAGCAGATTAGGGTGCTTGGATACAAGAGGGTGACTGCATCATTCAGTGCCAAGAAGTTCTGTGACAGAAGAAGGTATGAATATGTTATCCCTCTTTTTGCTTTGGATCCTTCTGCTCATAGGGATAGGGAGAGTGTTTTGGCTAGTGAAGGCAAGGAGGGTGCTCTAATCAAATGCTTAGAGTGCTCTGAGAGAGGCAGGAAGGTCCCTGGGCTCATGGGTAAAAAAAACGACATGGCAAGGAGTTGGAAGCGGTGAATAATGGTGATTTGAATGAGACAACGTTGACAGAACATGAACAGATAGAAAAGATTGTAGATATGCAAAATTCAGAAAAATCTGCACTACAGCAAAATGGATCGGTCACAGAAAATGGTGATGCCAGTTGTGACAAGAACCCAAATGTGGAGACAACAGCATTGGTTTCCGAGTTGAATTTGGAAAAAGCTGTTCGCCAAGGAGTGTCTGAACTTGAGAACAGTTCACTAGGGCCAGCTCCTGAACCTGCCCATGCCATCCTTGAGAACCCAAATGAAGGATTGAACTGCTCCCAGACAATAACATTGGTTTCTAATTCGAACTTGGAACAAACTTTGCCACAGGAAGGATCTGAAGTTAATAATAATTTGGCTCCGCAGAGCGATGGGCTACCTGTGAAGAGCAGCTTCCAATATGGAGAGAAGGAAAGGGATCGCTTTAACAGCATCCTGAAGCAGTTTGTTGGGACGCATAATTTCCACAATTTCACGACCCGCATTAAAGCAGAAGATCCAGCTGCAAATCGGTACATTCTGTCATTTGAGGCCAGTGATGTTTTTACCATTAACGGCATGGATTTTGTGAAATGCACAATTGTTGGTCAGAGTTTTGTGCTTCACCAGATACGGAAAATGATAGGCCTGGCTGTTGCAGTGATGCGAAATTGTGCGCCTGAGTCCATAATAGCCAGAGCTCTAAGAAAGGATGTGAATATGAATGTGCCCACAGCTCCCGAGTTAGGGTTGTTTTTGGACGAGAGCTTTTTCCCTGCTTACAACCAGAAATGGCAAGCTACGCACGAGGATGTCTCTTTGAAAGAATTTGCGCAGCAAATAGTTGAGTTCAAGCAGAAGTATATTTATACTCACATAGCATCCACTGAAGTTAAGGATGGGGTAGTAGCCCTTTGGTTGCATTCGCTTAATCAGCGGAACTACCTAGAGTTTGCTGGTGAAAGGGAAGCAGAAAATGTTCAGAATGGGGCAGAACCTCTTTCACTTAAAGAAAACATGGCTGACATGGAAGTGCTTGCAAATTAATTTATACCTATTACCAAGGCAAACTAGGTATCTCAATTCATGGTTCCTGCATTTAACTGCTGTTTCTGTTTGCGAGAGAATTTCTTACCTGGCGAACCTGGTTTAAAAGCAGCGTAGATATTCAACTGAATGCTTGGTTCATGGTTAACATTTTTGCAGCTCGCCATGTACTCTTTGCAGTTCTACTCTTCCTGCATACTTATTTTTCTTTCAGTTCTTTTGCTAGCTTTCTTTAGTGGCAATGCGAATTTATTTCTGTTTTTATGCTTTCTAAGGCTGATCTATTTCTTACAGGCAAAGTAAAATGATGAGATTGCAAACCTATCTAAATGGGGAAGCGGAAAATTATAAAGAAGTTAAGCATTGGTTGTACGTTTTTTTGGCCAGACTGTTGTTTACTTCACACTGCAACCATGCATATGAGTTCCATTATAATCATGATCAGACATTAGTGAACATGTGAGTCATTTCAGGAATGTCTTTGTTGTAGGTATTTGGAGTAAAAGATGTTGATTTTTGAAGAAGAGTATTGTAAACACATCTGAAGAGTGATATTTTCCCTTGGCCATGGATATTTTAACATCTACTGGCGCAACATCTACACCCACCCCCCACAGCTTAAGCTCATTGTTTCTA

Ace file of the UniGene sp_v3.0_unigene7136

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tRNA pseudouridine synthase family protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD2_CUCME	-	-	0.0	49%
FL-Next	sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Pseudouridylate synthase	-	-	3.099e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Isomerases, Intramolecular transferases (mutases), Transferring other groups.	EC:5.4.99.-	-	1.684e-11	-

Source	Gene names
Sma3	At1g20370; At1g76120; F14O10.3; GSVIVT00015530001; MICPUCDRAFT_3609; MICPUN_69585; OJ1725_H08.16; OSTLU_2261; Os02g0668400; OsI_08404; OsJ_07867; P0684A08.2; PHYPADRAFT_197512; POPTRDRAFT_206573; POPTRDRAFT_815980; RCOM_1508890; RCOM_1599840; VITISV_03184

Source	GOs	Term	Type	Identity
Sma3	pseudouridine synthase activity	GO:0009982	Molecular Function	-
Sma3	pseudouridine synthesis	GO:0001522	Biological Process	-
Sma3	tRNA processing	GO:0008033	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pseudouridine synthase I, TruA	IPR001406	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20370.1	Pseudouridine synthase family protein chr1:7051846-7053588 REVERSE LENGTH=549	53%
RefSeq	Arabidopsis thaliana	NP_564112.1	pseudouridine synthase-like protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002300673.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2G1

Fln msg: your sequence is shorter than subject: 157 - 212

Fln protein: MGGAKTIEGDLEEALFKAGAISEDQYGDPRKVDWMRSARTDKGVSAVGQVVSGRFFIDPPGLVERVNSHLPEQIRVLGYKRVTASFSAKKFCDRRRYEYVIPLFALDPSAHRDRESVLASEGKEGALIKCLECSERGRKVPGLMGKKNDMARSWKR*

Protein Length: 158

Fln nts: ATGGGAGGGGCTAAAACAATAGAGGGTGATTTGGAGGAGGCTTTGTTCAAGGCGGGAGCAATCTCAGAAGACCAGTATGGGGACCCCAGGAAAGTGGATTGGATGAGGTCTGCCAGAACAGACAAGGGGGTAAGTGCTGTTGGTCAGGTGGTTTCTGGGAGATTTTTCATAGACCCACCAGGGCTTGTGGAGAGAGTCAATTCCCACCTCCCAGAGCAGATTAGGGTGCTTGGATACAAGAGGGTGACTGCATCATTCAGTGCCAAGAAGTTCTGTGACAGAAGAAGGTATGAATATGTTATCCCTCTTTTTGCTTTGGATCCTTCTGCTCATAGGGATAGGGAGAGTGTTTTGGCTAGTGAAGGCAAGGAGGGTGCTCTAATCAAATGCTTAGAGTGCTCTGAGAGAGGCAGGAAGGTCCCTGGGCTCATGGGTAAAAAAAACGACATGGCAAGGAGTTGGAAGCGGTGA___ATAATGGTGATTTGAATGAGACAACGTTGACAGAACATGAACAGATAGAAAAGATTGTAGATATGCAAAATTCAGAAAAATCTGCACTACAGCAAAATGGATCGGTCACAGAAAATGGTGATGCCAGTTGTGACAAGAACCCAAATGTGGAGACAACAGCATTGGTTTCCGAGTTGAATTTGGAAAAAGCTGTTCGCCAAGGAGTGTCTGAACTTGAGAACAGTTCACTAGGGCCAGCTCCTGAACCTGCCCATGCCATCCTTGAGAACCCAAATGAAGGATTGAACTGCTCCCAGACAATAACATTGGTTTCTAATTCGAACTTGGAACAAACTTTGCCACAGGAAGGATCTGAAGTTAATAATAATTTGGCTCCGCAGAGCGATGGGCTACCTGTGAAGAGCAGCTTCCAATATGGAGAGAAGGAAAGGGATCGCTTTAACAGCATCCTGAAGCAGTTTGTTGGGACGCATAATTTCCACAATTTCACGACCCGCATTAAAGCAGAAGATCCAGCTGCAAATCGGTACATTCTGTCATTTGAGGCCAGTGATGTTTTTACCATTAACGGCATGGATTTTGTGAAATGCACAATTGTTGGTCAGAGTTTTGTGCTTCACCAGATACGGAAAATGATAGGCCTGGCTGTTGCAGTGATGCGAAATTGTGCGCCTGAGTCCATAATAGCCAGAGCTCTAAGAAAGGATGTGAATATGAATGTGCCCACAGCTCCCGAGTTAGGGTTGTTTTTGGACGAGAGCTTTTTCCCTGCTTACAACCAGAAATGGCAAGCTACGCACGAGGATGTCTCTTTGAAAGAATTTGCGCAGCAAATAGTTGAGTTCAAGCAGAAGTATATTTATACTCACATAGCATCCACTGAAGTTAAGGATGGGGTAGTAGCCCTTTGGTTGCATTCGCTTAATCAGCGGAACTACCTAGAGTTTGCTGGTGAAAGGGAAGCAGAAAATGTTCAGAATGGGGCAGAACCTCTTTCACTTAAAGAAAACATGGCTGACATGGAAGTGCTTGCAAATTAATTTATACCTATTACCAAGGCAAACTAGGTATCTCAATTCATGGTTCCTGCATTTAACTGCTGTTTCTGTTTGCGAGAGAATTTCTTACCTGGCGAACCTGGTTTAAAAGCAGCGTAGATATTCAACTGAATGCTTGGTTCATGGTTAACATTTTTGCAGCTCGCCATGTACTCTTTGCAGTTCTACTCTTCCTGCATACTTATTTTTCTTTCAGTTCTTTTGCTAGCTTTCTTTAGTGGCAATGCGAATTTATTTCTGTTTTTATGCTTTCTAAGGCTGATCTATTTCTTACAGGCAAAGTAAAATGATGAGATTGCAAACCTATCTAAATGGGGAAGCGGAAAATTATAAAGAAGTTAAGCATTGGTTGTACGTTTTTTTGGCCAGACTGTTGTTTACTTCACACTGCAACCATGCATATGAGTTCCATTATAATCATGATCAGACATTAGTGAACATGTGAGTCATTTCAGGAATGTCTTTGTTGTAGGTATTTGGAGTAAAAGATGTTGATTTTTGAAGAAGAGTATTGTAAACACATCTGAAGAGTGATATTTTCCCTTGGCCATGGATATTTTAACATCTACTGGCGCAACATCTACACCCACCCCCCACAGCTTAAGCTCATTGTTTCTA

Fln Alignment:

Contig7136___TIEGDLEEALFKAGAISEDQYGDPRKVDWMRSARTDKGVSAVGQVVS-------GRFFIDPPG--LVERVNSHLPEQIRV
A9P2G1______________TIEDELEKAILKAGGMLESNYGNLHKLGWRRSSRTDKGVHSLATVIAMKMEIPDGAWEEDPDGIALADVINRHLPYNIRI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1458	11		88		0.923564
1461			88	11	0.923564
1462	88			11	0.923564
1467	20	80			0.999996
1476	77	22			0.999999
1509	88	11			0.923564
1520	62	12	25		1.0
1555		16		83	0.994512
1634	66			33	1.0
1733		25		75	0.996473
1734	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain