SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7133

Length: 2953 nt

UniGene Fasta

>sp_v3.0_unigene7133
AATGTCGCCTTAAAGGAGAATTTTACCAGAAAATGAATGATGGTGAAAGTGCTAATCAATCATATTCTGAAGCAATCAGTCGCTTCAAGAATCTATATAAAGGATGGATAAGCTGGGGTAATTATAGTGACCAGGTGTATAAAGAGACACATGATGAGCTGTGGCTAGAATATGCAGTAAGCTGCTTTCTTCAAGGTATTAAATATGGGGCTTCAAATGCTAGAAGCCACTTAGCACGTGTTCTGTATTTATTGAGCTTTGACACGCAAAATGAGCCTGTGGGCAAAGCATTTGATAGGTTCTTAGATCAGATACCCCATGGGTCTGGCTGTCATGGATACCTCAGCTACTGCTTTCCCTGCAAAGGCCTGAGGCAGCTCATTGCAAGCTTGTTCTTCTCAAAATAGCCACAGTCTATCCACAGGCTCTTTATTATTGGTTGCGGACATATTTACTAGAACGACGTGATGTTGCTAGTAAGTCAGAACTGGGAAGGGAGCTGTGGCTGCTCAGCAACGTGTTCAACAGATACCTGCGTCAGTTGCTACTTCTGCTTCTCTAAATTCAGTGGAAAGTAATCCCATAGCCTCACATCCAAGTGCAAGCAACCTGGCTCCTGAAGTTGTAAATAATCAACTTCCTCAGGGTGGCAGTTTGAATGTTTCTCATGATGGTTCCAATCCTCAAGGACAAGATTCAGACAGAGGTCAAACAATTGATGGAAATATTCCTGCAGGCGCAGAATCATCTCAAACGAATTCGGCAGGTATACATGACTCTCAAGCTGGAATCAGGCGCAATGCCGGGCTTAGTTGGGGAGCATCAGCAGTGACAGCATTTGATGCTGCCAAGGATGTCATGGAGGCTTTAAGGAACAAACATACAAATTTGGCGAGTGAGCTTGAGGTTTTTCTGACTGAAATTGGTTCAAGATTTGTCCCTTTGCCCGAAGAGAGACTTCTTGCTGTTGTGCACGCATTGTTGCACCGCTGCTATAAATATCCTACTGCCACAACAGCAGAGGTTCCCCAGTCTCTCAAAAAGGAGCTTTCAGGTGTTTGTAGGGCTTGCTTTTCAGCAGATACTGTGAACAAACATGTTGAGTTTGTGAATGAGTACAAACGGGACTTTGAACGTGATCTTGATCCAGAAAGTACAACAACATTTCCAGCTACTCTATCTGATTTGACTGAGCGTTTGAAACATTGGAAGAATGTTCTGCAAAGCAATGTGGAAGATAGATTTCCTGCTGTCCTGAAACTGGAAGAAGAAAGCAGGGCTCTGCGTGAGTTTCATGTGGTTGATGTGGAAGTTCCAGGACAGTATTTTGCAGATCAGGAGATTGCACCTGACCATACAGTGAAGTTGGATAGAATTGGGGCTGACCTGCCTATAGTGCGCAAGGCATGGTAGCAGCTTCCGTCGATTGACAATAGTTGGTTCTGATGGTTCACAACGACATTTTCTAGTACAGACTTCATTAACTCCTAGTGCTAGGAGTGATGAACGAATGGTACAACTGTTTCGTGTCTTAAACAGGTTGTTTGACAAACACAAGGAATCAAGACGCAGGCATCTTGCATTTCACACTCCAATTATTATACCAGTTTGGCCACAGGTTCGCATGGTGGAGGATGATTTGATGTATAGTACTTTTGGGGAAGTGTATGAAATCAACTGTGCTAGATATGGCCGGGAAGCTGATCTTCCAATCACCCATTTTAAAGAGCGTTTGAATCAAGCTATTATTGGTCAACTCTCACCTGAATCTGTTGCGGACTTACGACTGCATATATACAATGAGATAACTTCAAGCCTTGTCAGTGAGAATGTATTATGTCAATACATGTATAAAACACTTCCAACCTGTAATCATTTGTGGGCATTCAGAAAACAATTTGCAGTTCAGTTAGCCTTGTCAGGGTTCATGTCATATATGTTACAAATTGGTGGGAGAACTCCAAACAAAATTTTATTTGCTAAAAATACAGGCAAAGTGTTTCAAAATGACTTCCACCCTGCTTATGATGCAAATGGTATGATAGAGTTTAATGAGCCAGTGCCATTCAGGCTTACGCGTAATTTGCAAACTTTCTTCACGCCTTTTGGTGTTGAAGGTCTTTTTGTTTCTGCCATGTGTGCGGCTGCGCAGTCCATTGTTGCCCCGAAGAGTCAGCATGTTCAGCACCATCTAGCAATGTTCTTCAGGGATGAGCTTTTGTCATGGTCCTGGAGAAGACCACCTGGAATGCCATCAGCACCAGCTGCAGCAGGTGGTATAAATCCTATCGAATTTGAACAAAAGGTGACGACAAATGTTGAGGAAGTCATACGCCGTATCAAACGTATTGCTCCACAATGCTTCCCAGAAGAGGATGAGAATGCTACAGAACCACCACAGTCCGTACAGAGAGGTGTCACAGAGCTGGTGGAGGCGGCCTTGCGACCTAAGAGCCTTTGTATGATGGATCCTACTTGGCATCCTTGGTTCTGATTGGTTGCACTGGCAACATTCTGGATGGACAATGAAAGTTTTCTTGTATAATACCTTTAATCTGCCTTTTACTTGTATGATTCAACTGCTTGCATAATGTTCAGTTCTAGGTTCGTAATTTTGCGTTTTAGCAAGTACGTTCACATGAAGTTATGTACAGTTGATTGCTGCTATGCACATTTTGGCATTTGGTTGTTTTCATACGATAGCAACAATAGTTGCCTGTTATTTGCTAAGCTTGCTAAGTTGGCTTGGCTTGTTGGCGTGTCACGGAACTTGTCCAAACTTAACATGATTCAGTTAAATTCAGTTAGACTCACAAATCTTCTGAAACGCGTGTGTCAAAGCAGGTCAGGTTTCTGTCAAATTGGCTAGTGATTTGTTTCCATTTGTTTAATGTTGTGTATTATGCAGTTCGTACTTGGAATACGTATTATACAGGTTATTGAAGAATATAAC

Ace file of the UniGene sp_v3.0_unigene7133

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[TDBLU] COG5032 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family	-	-	0.0	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%

Source	Gene names
Sma3	AT4g36080; CHLREDRAFT_141477; GSVIVT00005177001; GSVIVT00036786001; MICPUCDRAFT_47235; MICPUN_91134; OSTLU_42472; Os07g0645100; OsI_27084; OsJ_25347; Ot08g01230; PHYPADRAFT_183414; POPTRDRAFT_757154; POPTRDRAFT_827059; RCOM_0870970; T19K4.210;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	PIK-related kinase	IPR014009	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G17930.1	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain chr2:7784455-7802230 REVERSE LENGTH=3858	70%
RefSeq	Arabidopsis thaliana	NP_179383.3	transformation/transcription domain-associated protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002327756.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9T7

Fln msg: your sequence is longer than subject: 328 - 215

Fln protein: MVQLFRVLNRLFDKHKESRRRHLAFHTPIIIPVWPQVRMVEDDLMYSTFGEVYEINCARYGREADLPITHFKERLNQAIIGQLSPESVADLRLHIYNEITSSLVSENVLCQYMYKTLPTCNHLWAFRKQFAVQLALSGFMSYMLQIGGRTPNKILFAKNTGKVFQNDFHPAYDANGMIEFNEPVPFRLTRNLQTFFTPFGVEGLFVSAMCAAAQSIVAPKSQHVQHHLAMFFRDELLSWSWRRPPGMPSAPAAAGGINPIEFEQKVTTNVEEVIRRIKRIAPQCFPEEDENATEPPQSVQRGVTELVEAALRPKSLCMMDPTWHPWF*

Protein Length: 329

Fln nts: AATGTCGCCTTAAAGGAGAATTTTACCAGAAAATGAATGATGGTGAAAGTGCTAATCAATCATATTCTGAAGCAATCAGTCGCTTCAAGAATCTATATAAAGGATGGATAAGCTGGGGTAATTATAGTGACCAGGTGTATAAAGAGACACATGATGAGCTGTGGCTAGAATATGCAGTAAGCTGCTTTCTTCAAGGTATTAAATATGGGGCTTCAAATGCTAGAAGCCACTTAGCACGTGTTCTGTATTTATTGAGCTTTGACACGCAAAATGAGCCTGTGGGCAAAGCATTTGATAGGTTCTTAGATCAGATACCCCATGGGTCTGGCTGTCATGGATACCTCAGCTACTGCTTTCCCTGCAAAGGCCTGAGGCAGCTCATTGCAAGCTTGTTCTTCTCAAAATAGCCACAGTCTATCCACAGGCTCTTTATTATTGGTTGCGGACATATTTACTAGAACGACGTGATGTTGCTAGTAAGTCAGAACTGGGAAGGGAGCTGTGGCTGCTCAGCAACGTGTTCAACAGATACCTGCGTCAGTTGCTACTTCTGCTTCTCTAAATTCAGTGGAAAGTAATCCCATAGCCTCACATCCAAGTGCAAGCAACCTGGCTCCTGAAGTTGTAAATAATCAACTTCCTCAGGGTGGCAGTTTGAATGTTTCTCATGATGGTTCCAATCCTCAAGGACAAGATTCAGACAGAGGTCAAACAATTGATGGAAATATTCCTGCAGGCGCAGAATCATCTCAAACGAATTCGGCAGGTATACATGACTCTCAAGCTGGAATCAGGCGCAATGCCGGGCTTAGTTGGGGAGCATCAGCAGTGACAGCATTTGATGCTGCCAAGGATGTCATGGAGGCTTTAAGGAACAAACATACAAATTTGGCGAGTGAGCTTGAGGTTTTTCTGACTGAAATTGGTTCAAGATTTGTCCCTTTGCCCGAAGAGAGACTTCTTGCTGTTGTGCACGCATTGTTGCACCGCTGCTATAAATATCCTACTGCCACAACAGCAGAGGTTCCCCAGTCTCTCAAAAAGGAGCTTTCAGGTGTTTGTAGGGCTTGCTTTTCAGCAGATACTGTGAACAAACATGTTGAGTTTGTGAATGAGTACAAACGGGACTTTGAACGTGATCTTGATCCAGAAAGTACAACAACATTTCCAGCTACTCTATCTGATTTGACTGAGCGTTTGAAACATTGGAAGAATGTTCTGCAAAGCAATGTGGAAGATAGATTTCCTGCTGTCCTGAAACTGGAAGAAGAAAGCAGGGCTCTGCGTGAGTTTCATGTGGTTGATGTGGAAGTTCCAGGACAGTATTTTGCAGATCAGGAGATTGCACCTGACCATACAGTGAAGTTGGATAGAATTGGGGCTGACCTGCCTATAGTGCGCAAGGCATGGTAGCAGCTTCCGTCGATTGACAATAGTTGGTTCTGATGGTTCACAACGACATTTTCTAGTACAGACTTCATTAACTCCTAGTGCTAGGAGTGATGAACGA_-_ATGGTACAACTGTTTCGTGTCTTAAACAGGTTGTTTGACAAACACAAGGAATCAAGACGCAGGCATCTTGCATTTCACACTCCAATTATTATACCAGTTTGGCCACAGGTTCGCATGGTGGAGGATGATTTGATGTATAGTACTTTTGGGGAAGTGTATGAAATCAACTGTGCTAGATATGGCCGGGAAGCTGATCTTCCAATCACCCATTTTAAAGAGCGTTTGAATCAAGCTATTATTGGTCAACTCTCACCTGAATCTGTTGCGGACTTACGACTGCATATATACAATGAGATAACTTCAAGCCTTGTCAGTGAGAATGTATTATGTCAATACATGTATAAAACACTTCCAACCTGTAATCATTTGTGGGCATTCAGAAAACAATTTGCAGTTCAGTTAGCCTTGTCAGGGTTCATGTCATATATGTTACAAATTGGTGGGAGAACTCCAAACAAAATTTTATTTGCTAAAAATACAGGCAAAGTGTTTCAAAATGACTTCCACCCTGCTTATGATGCAAATGGTATGATAGAGTTTAATGAGCCAGTGCCATTCAGGCTTACGCGTAATTTGCAAACTTTCTTCACGCCTTTTGGTGTTGAAGGTCTTTTTGTTTCTGCCATGTGTGCGGCTGCGCAGTCCATTGTTGCCCCGAAGAGTCAGCATGTTCAGCACCATCTAGCAATGTTCTTCAGGGATGAGCTTTTGTCATGGTCCTGGAGAAGACCACCTGGAATGCCATCAGCACCAGCTGCAGCAGGTGGTATAAATCCTATCGAATTTGAACAAAAGGTGACGACAAATGTTGAGGAAGTCATACGCCGTATCAAACGTATTGCTCCACAATGCTTCCCAGAAGAGGATGAGAATGCTACAGAACCACCACAGTCCGTACAGAGAGGTGTCACAGAGCTGGTGGAGGCGGCCTTGCGACCTAAGAGCCTTTGTATGATGGATCCTACTTGGCATCCTTGGTTCTGA___TTGGTTGCACTGGCAACATTCTGGATGGACAATGAAAGTTTTCTTGTATAATACCTTTAATCTGCCTTTTACTTGTATGATTCAACTGCTTGCATAATGTTCAGTTCTAGGTTCGTAATTTTGCGTTTTAGCAAGTACGTTCACATGAAGTTATGTACAGTTGATTGCTGCTATGCACATTTTGGCATTTGGTTGTTTTCATACGATAGCAACAATAGTTGCCTGTTATTTGCTAAGCTTGCTAAGTTGGCTTGGCTTGTTGGCGTGTCACGGAACTTGTCCAAACTTAACATGATTCAGTTAAATTCAGTTAGACTCACAAATCTTCTGAAACGCGTGTGTCAAAGCAGGTCAGGTTTCTGTCAAATTGGCTAGTGATTTGTTTCCATTTGTTTAATGTTGTGTATTATGCAGTTCGTACTTGGAATACGTATTATACAGGTTATTGAAGAATATAAC

Fln Alignment:

Contig7133___MYKTLPTCNHLWAFRKQFAVQLALSGFMSYMLQIGGRTPNKILFAKNTGKVFQNDFHPAYDANGMIEFNEPVPFRLTRNLQTFFTPFGVEGLFVSAMCAAAQSIVAPKSQHVQHHLAMFFRDELLSWSWRRXXXXXXXXXXXXXINPIEFEQKVTTNVEEVIRRIKRIAPQCFPEEDENATEPPQSVQRGVTELVEAALRPKSLCMMDPTWHPWF
D5A9T7______________MYKTLPSCNHLWAFRKQFAVQLALSGFMSYMLQIGGRTPNKILFAKNTGKVFQNDFHPAYDANGMIEFNEPVPFRLTRNLQTFFTPFGVEGLFVSAMCAAAQSIVAPKSQHVQHHLAMFFRDELLSWSWRRPPGMPSAPASAGGINPVEFEQKVTTNVEDVIRRIKRIAPQCFPEEDENATEPPQSVQRGVTELVEAALRPKSLCMMDPTWHPWF

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
1479	20		80		0.995493
1529		25		75	0.996473
1659			20	80	0.995493
1660			20	80	0.995493
1661			20	80	0.995493
1792	11	88			0.923564
1795		88		11	0.923564
2135	20	80			0.995493
2138		80	20		0.995493
2139		80	20		0.995493
2298	85			14	0.993533
2299			14	85	0.993533
2300			14	85	0.993533
2301			14	85	0.993533
2331	88			11	0.923564
2333			11	88	0.923564
2334		88	11		0.923564
2431	11	88			0.923564
2435			11	88	0.923564
2474	90		10		0.90298
2702	90		10		0.90298
2770		68		31	1.0
2834			37	62	1.0
2908	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain