SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7126

Length: 1613 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene7126

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PQ loop repeat-containing protein [Arabidopsis thaliana] gb\|AAL86295.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91683.1\| unknown protein [Arabidopsis thaliana] gb\|AEC09919.1\| PQ loop repeat-containing protein [Arabidopsis thaliana]	-	-	0.0	41%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	45%

Source	Gene names
Sma3	AT4g20100; At2g41050; At4g20100; GSVIVT00023372001; GSVIVT00025009001; MtrDRAFT_AC149134g33v2; Os01g0266800; OsI_01310; OsJ_01221; P0011D01.8; POPTRDRAFT_867186; POPTRDRAFT_906883; RCOM_0411610;

Source	InterPros	Term	Type	e value	Identity
Sma3	Cystinosin/ERS1p repeat	IPR006603	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002322574.1	predicted protein [Populus trichocarpa]	0.0	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9IHG0

Fln msg:

Fln protein: VSLGFGLISFFSWALAEIPQIVTNFKSGSSEGISLAFLMTWLIGDLFNLIGCLLEPATIPTQLYTAVIYTITTVVLSWHAVYYGYICKWWKARKVKSTPKKQHEDGASNNRPRQRENTKTEPVNVSESIADSAELAKKKDTDWEKFSTGNTASSLPIPSISPGRETSIGRNLYYMSARSLASGHTPTPGSYLASPFRGSGRSSPTFTLNQACVDDEGLLTDLVSANNNNSKTTLRSVAATMFFVGGLNLFHLLNVHNTTMVFDSTKVERASVVLTGRRILQGASSLTARDLMVQEQSRSPVGTYLGWVMAIIYMGGRFPQICLNIKRGTVEGLNPLMFLFAIIGNTTYVASIVVRTLEWRKLKPNLPWLVDAAACVFLDCFILAQFAFYKTRRSDDQEDEDCSNGDYVAIKLPGTTN*

Protein Length: 419

Fln nts: GTTTCTCTTGGCTTTGGGTTGATCAGCTTTTTCAGCTGGGCTCTCGCTGAAATTCCTCAGATTGTTACCAATTTCAAATCTGGATCGTCGGAAGGAATCTCGCTTGCATTTCTGATGACATGGCTTATTGGGGATTTGTTCAATCTTATTGGGTGTTTGCTGGAGCCAGCAACGATCCCTACACAACTCTATACAGCAGTGATTTATACCATTACCACTGTGGTCCTAAGTTGGCACGCTGTATACTATGGCTATATCTGCAAGTGGTGGAAAGCCAGGAAAGTTAAGTCAACACCCAAGAAGCAACATGAAGACGGTGCAAGCAATAATCGGCCCAGGCAACGTGAAAACACAAAGACAGAGCCTGTGAATGTGTCAGAAAGCATAGCTGATTCTGCCGAGCTAGCCAAGAAAAAAGATACAGATTGGGAGAAATTCTCTACTGGGAATACTGCGTCTAGTTTACCTATTCCTTCCATTTCTCCAGGTCGTGAGACATCTATTGGAAGGAATTTATATTACATGTCTGCAAGATCTCTAGCAAGCGGCCATACCCCTACGCCTGGTTCATATCTGGCTTCACCATTCCGTGGGTCAGGTCGAAGTTCTCCGACCTTTACATTAAACCAAGCATGTGTAGACGACGAAGGATTGCTCACCGACCTTGTTTCTGCAAATAATAACAATTCAAAAACCACGCTACGCAGTGTTGCTGCAACAATGTTCTTTGTGGGTGGACTGAATTTATTCCATCTACTTAATGTTCACAACACTACTATGGTCTTTGATTCTACAAAGGTTGAGAGAGCATCAGTTGTACTAACAGGGAGGAGAATCTTGCAGGGAGCGAGTTCACTTACAGCAAGGGACTTAATGGTACAAGAACAATCAAGGAGTCCAGTAGGGACATACTTGGGGTGGGTTATGGCTATTATCTATATGGGTGGACGGTTTCCACAAATCTGTCTAAATATAAAACGAGGAACTGTTGAGGGTCTAAATCCATTGATGTTCCTATTTGCGATAATTGGTAATACAACCTATGTGGCAAGCATTGTTGTAAGGACTTTGGAATGGAGAAAACTAAAGCCAAATTTGCCATGGCTTGTGGATGCTGCAGCCTGTGTGTTTTTAGATTGCTTTATTTTGGCTCAATTTGCCTTTTATAAGACTAGGAGGTCTGATGATCAAGAAGATGAAGATTGTAGTAATGGAGATTATGTGGCAATCAAGCTGCCTGGAACAACAAACTAG___GCTTCCGGCTGATAGAAGTTGGATTCTTTCAGTTCCAGCTCAGTCAAAATGATGCGTGATAACCGGAACCGCTGAGGTGAGACAACTGTGCATAGTGAGATAACGGTGCAATAGGAGACGGAGCTCGCTCATTGTTGAGAATGGAAACAAACTGAACGTGGGAAATTACAATGGCAGTTAGATAGACCATTGAAATGAACGTGCATTGGCTATTTATAGTTTTGTAATATCATTTGATTGTGGGCCCTCTCATTTAGGGCGAGACATTTTTAAACAATCTAATGAACTATATTTTTAATTAATCATATAAGGTATTAAGTCGTCTTTCATTAAATCATGTAAGGTACGAAGTTGTTTTC

Fln Alignment:

Contig7126___VSLGFGLISFFSWALAEIPQIVTNFKSGSSEGISLAFLMTWLIGDLFNLIGCLLEPATIPTQLXXXXXXXXXXXXLSWHAVYYGYICKWWKARK--VKSTPKKQHEDGAS------NNRPRQRENTKTEPVNVSESIADSAELAKKKDTDWEKFSTGNTASSLPIPSISPGRETSIGRNLYYMSARSLASGHTPTPGSYLASPFRGSGRSSPTFTLNQACVDDEGLLTDLV--SANNNNSKTTLRSVAATMFFVGGLNLFHLLNVHNTTMVFDSTKVERASVVLTGRRILQGASSLTARDLMVQEQSRSPVGTYLGWVMAIIYMGGRFPQICLNIKRGTVEGLNPLMFLFAIIGNTTYVASIVVRTLEWRKLKPNLPWLVDAAACVFLDCFILAQFAFYKTRR
B9IHG0______________VSLTLGVISVLSWGVAEIPQIITNYKEKSTEGLSLAFLLTWIIGDLFNVFGCMLEPATLPTQYYMAVLYTITTSVLTAQTIYYGHIYHRLKRNRRCIKTEEAGRIRQGNSDAGAQVNNAGKQRNETASPD--------------------------GTNGSSSPIPFPTLFQKSSPGRELYYMSARSLSSSHTPAVGSFLAQRV-----ASPSFSMRNS-IEDPLLGGDATTQSAPNLNTKTML-CVVSVVTLLGTLNLHQSAN-NRLARAFENK--HQGFVIQVGRKILQASSRMSHENY----SEGSGIGTFLGWSMAAIYMGGRLPQIFLNIKRGNVEGLNPLMFVFALIGNITYVASILVDSVAWSKISANLPWLVDAGGCVLLDTCILLQFAYFRHRR

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
246		75		25	1.0
330	12			87	0.992554
331	12	87			0.992554
799		10	90		0.90298
985	88	11			0.923564
991		11	88		0.923564
993			88	11	0.923564
994		11	88		0.923564
995	11		88		0.923564
1005	90		10		0.90298
1010		10		90	0.90298
1011		11	88		0.923564
1014		88	11		0.923564
1017	88		11		0.923564
1019		11		88	0.923564
1020	11			88	0.923564
1021		11	88		0.923564
1022		88		11	0.923564
1023		11	88		0.923564
1068			12	87	0.992554
1070		12		87	0.992554
1072			85	14	0.993533
1073	85		14		0.993533
1075		14		85	0.993533
1076		14	85		0.993533
1077			85	14	0.993533
1078	85			14	0.993533
1081	85		14		0.993533
1082	85	14			0.993533
1083	85			14	0.993533
1084		85	14		0.993533
1086	83	16			0.994512
1088	83	16			0.994512
1089			83	16	0.994512
1091	16	83			0.994512
1150	20		80		0.995493
1190	80		20		0.995493
1191	80			20	0.995493
1192		20	80		0.995493
1193	80		20		0.995493
1194	80			20	0.995493
1197		20		80	0.995493
1198		20	80		0.995493
1199	80			20	0.995493
1200	80			20	0.995493
1202	80		20		0.995493
1203		20		80	0.995493
1209		25	75		0.996473
1222	20			80	0.995493
1391			75	25	0.996473
1465		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain