SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7123

Length: 2183 nt

UniGene Fasta

>sp_v3.0_unigene7123
CCCTGATCCGGAAGAGATTGGCGAGAATAATGGAGCTTGGAAAGATGAATCTTATCCCTCTGGCGAATTTGAGTATAAGGAAATTGAAGGATGGAGTAGATTTCTTGTCCAACTGAAAATGTTTATTGCGCCACCTTGGGAGCGGGTGAAGAAAGGCAGTGTGTTGCACATGAAACTACGAGGCGAGATTTTGGATCAACTGCAAGGATCGTTTTCATCAAGATTATCATTACCTAAAATATCAGAGAATTTTATGAAAGCTGCTTATGATCCCCGAATTTCTGGCATCTATCTTGAAATTGAACCACTTAACTGTGCATGGGGTAAAATTGATGAAATTCGTCGACACATTCTTGACTACAAGAAGTCAGGTAAATTTATCGCAGGTTATATCCCAGTTTGTGGTGAGAAGGAGTATTACCTTGCTTGTGCTTGTGGAGAGTTGTATGCCCCACCTGGTGCATACATTAGCTTATACGGTTTGAAGGTTCAAGCAACATTTCTTGGTGGAGTTCTTGAAAAGGCAGGTATAACACCTCAAATACAACGTATTGGAAAATACAAAAGTGCAGGGGATCTGTTATCTCGAAAGAACATATCAGAGGAGAATCGTGAGATGTTGACTGTTATATTGGATAATATCTATGAGAATTGGGTTCAGAAAATATCATCTACTCTAGGTAAAACAAAGGAAAATATTGAGATTTTTCTCAATGAAGGTATTTATAAAGTAGAAAGGCTAAAGCAAGAAGGATGGATCACAGATATAAAATACGATGATGAGGTGACAACAATGCTAAAAGAGCGATTAGGCCAGAAACTAGACAAAGAACTTCTTCTTGTCGACTATAAAAAGTATTCAAGGGTTAGGAAGTGGACACTTGGATTAGCTGGAGGCAGAGATAAGATTGCAATTATTAGGGCTTCAGGAAGCATTAGCCGTGTAAGCAGTCGTTTCAATGTCTCAAGGAGTGGTATTGCTGGTGAACAATTTATCAAGAAGATTCGGGAAGTACGAGCATCAAAGAGATACAAGGCTGTAATTTTACGCATTGACAGCCCTGGTGGTGATGCTCTAGCCTCAGATTTAATGTGGAGGGAAATCAGGTTATTAGCTGCTGAAAAGCCTGTGGTTGCATCCATGGGTGATGTGGCTGCAAGTGGAGGCTATTACATGGCAATGGCAGCAGGAGTCATTGTTTCAGAGAGTCTTACATTGACTGGTTCGATTGGGGTTGTGACAGGAAAATTAAACTTGAACAAGCTGTATGACAGGATTGGCTTCAATAAAGAGGTAATCTCAAGAGGCAGATTTGCAGAGTTGGATGTTGAACAGCGCCCATTCAGGCCTGATGAAGAGGATTTATTTGCCAAATCTGCACAAAATGCATATAAACTGTTTCGAGATAAAGCAGCATTCTCTAGGTCTATGAGTGTTGACAGTATGGAGGCTGTGGCTCAAGGTAGGGTGTGGACCGGTAAAGATGCAGCTAGTCTTGGTTTGGTGGATGCAATTGGAGGGTTTTCCAGAGCTGTTGCAATTGCAAAACAAAAGGCAAACATACCACTTGATAGGAAGGTTTCCCTGGTGGAGTTGTCTAGAAGTTCACCATCTTTACCTGAACTTATCAGTAGTGGGGCACGTGCAATATTTGGTCTTCCGTCATTGCTAAGCTTGGACGAAAGACTTAAGGAACTTTCTCAGGAGCTTTCTCCATCTGGAGTGCAAGCTCGAATGGATAGTATTATTCTTCAAGGTCTTGGAGAATATCAAGATGGACAGGTGTTCCTGAAGATTATTAAGGATTATCTCAGCTCTTTCTGAAACCTGAAACTTGCATGTACATATAAAATGGCTTGTAAAGGTAGTTTGTCTTCTGTTAAAGTAAAGGTGATTATGTCCTATGAACTAAAGTCACCATTGTATAGAAACCCAATTCATTTGTGGAGCTAAACTTGTCACTTCAGACAATAGTTCAACTGAATTGGACTGTTAAGGTCTAAATTGCTACAGTGATAAAACATTTAATATCCAATGCCTGTATTTATTCAACTATATCCAGATCTGAATAACAGAATTCAGTTGGGTTGCTGATTGGCAAAGCTTACCCAATTGGAATTTTTAACCAGACTGGTCTGGACTCTGAACAGCTTCTGTGCTTTTCATGATGTTGGGAAATACA

Ace file of the UniGene sp_v3.0_unigene7123

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase n=1 Tax=Vitis vinifera RepID=UPI000198502A	-	-	0.0	65%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	67%
Sma3	Putative protease IV	-	-	1.902e-09	-

Source	Gene names
Sma3	At1g73990; B1121A12.37; CHLREDRAFT_144136; F2P9.14; GSVIVT00017564001; GSVIVT00017565001; GSVIVT00017567001; Os02g0728100; OsI_08780; OsJ_08238; PHYPADRAFT_20962; POPTRDRAFT_1100867; POPTRDRAFT_666214; RCOM_1619260; SPP1A; SppA; sppA;

Source	GOs	Term	Type	Identity
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	signal peptide processing	GO:0006465	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Peptidase S49	IPR002142	-	-
Sma3	Peptidase S49, protease IV	IPR004634	-	-
Sma3	Peptidase S49, SppA	IPR004635	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G73990.1	SPPA, SPPA1 signal peptide peptidase chr1:27824465-27828807 FORWARD LENGTH=677	63%
RefSeq	Arabidopsis thaliana	NP_565077.2	signal peptide peptidase [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002322054.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: I1JWL3

Fln msg: your sequence is shorter than subject: 608 - 683

Fln protein: PDPEEIGENNGAWKDESYPSGEFEYKEIEGWSRFLVQLKMFIAPPWERVKKGSVLHMKLRGEILDQLQGSFSSRLSLPKISENFMKAAYDPRISGIYLEIEPLNCAWGKIDEIRRHILDYKKSGKFIAGYIPVCGEKEYYLACACGELYAPPGAYISLYGLKVQATFLGGVLEKAGITPQIQRIGKYKSAGDLLSRKNISEENREMLTVILDNIYENWVQKISSTLGKTKENIEIFLNEGIYKVERLKQEGWITDIKYDDEVTTMLKERLGQKLDKELLLVDYKKYSRVRKWTLGLAGGRDKIAIIRASGSISRVSSRFNVSRSGIAGEQFIKKIREVRASKRYKAVILRIDSPGGDALASDLMWREIRLLAAEKPVVASMGDVAASGGYYMAMAAGVIVSESLTLTGSIGVVTGKLNLNKLYDRIGFNKEVISRGRFAELDVEQRPFRPDEEDLFAKSAQNAYKLFRDKAAFSRSMSVDSMEAVAQGRVWTGKDAASLGLVDAIGGFSRAVAIAKQKANIPLDRKVSLVELSRSSPSLPELISSGARAIFGLPSLLSLDERLKELSQELSPSGVQARMDSIILQGLGEYQDGQVFLKIIKDYLSSF*

Protein Length: 609

Fln nts: CCCTGATCCGGAAGAGATTGGCGAGAATAATGGAGCTTGGAAAGATGAATCTTATCCCTCTGGCGAATTTGAGTATAAGGAAATTGAAGGATGGAGTAGATTTCTTGTCCAACTGAAAATGTTTATTGCGCCACCTTGGGAGCGGGTGAAGAAAGGCAGTGTGTTGCACATGAAACTACGAGGCGAGATTTTGGATCAACTGCAAGGATCGTTTTCATCAAGATTATCATTACCTAAAATATCAGAGAATTTTATGAAAGCTGCTTATGATCCCCGAATTTCTGGCATCTATCTTGAAATTGAACCACTTAACTGTGCATGGGGTAAAATTGATGAAATTCGTCGACACATTCTTGACTACAAGAAGTCAGGTAAATTTATCGCAGGTTATATCCCAGTTTGTGGTGAGAAGGAGTATTACCTTGCTTGTGCTTGTGGAGAGTTGTATGCCCCACCTGGTGCATACATTAGCTTATACGGTTTGAAGGTTCAAGCAACATTTCTTGGTGGAGTTCTTGAAAAGGCAGGTATAACACCTCAAATACAACGTATTGGAAAATACAAAAGTGCAGGGGATCTGTTATCTCGAAAGAACATATCAGAGGAGAATCGTGAGATGTTGACTGTTATATTGGATAATATCTATGAGAATTGGGTTCAGAAAATATCATCTACTCTAGGTAAAACAAAGGAAAATATTGAGATTTTTCTCAATGAAGGTATTTATAAAGTAGAAAGGCTAAAGCAAGAAGGATGGATCACAGATATAAAATACGATGATGAGGTGACAACAATGCTAAAAGAGCGATTAGGCCAGAAACTAGACAAAGAACTTCTTCTTGTCGACTATAAAAAGTATTCAAGGGTTAGGAAGTGGACACTTGGATTAGCTGGAGGCAGAGATAAGATTGCAATTATTAGGGCTTCAGGAAGCATTAGCCGTGTAAGCAGTCGTTTCAATGTCTCAAGGAGTGGTATTGCTGGTGAACAATTTATCAAGAAGATTCGGGAAGTACGAGCATCAAAGAGATACAAGGCTGTAATTTTACGCATTGACAGCCCTGGTGGTGATGCTCTAGCCTCAGATTTAATGTGGAGGGAAATCAGGTTATTAGCTGCTGAAAAGCCTGTGGTTGCATCCATGGGTGATGTGGCTGCAAGTGGAGGCTATTACATGGCAATGGCAGCAGGAGTCATTGTTTCAGAGAGTCTTACATTGACTGGTTCGATTGGGGTTGTGACAGGAAAATTAAACTTGAACAAGCTGTATGACAGGATTGGCTTCAATAAAGAGGTAATCTCAAGAGGCAGATTTGCAGAGTTGGATGTTGAACAGCGCCCATTCAGGCCTGATGAAGAGGATTTATTTGCCAAATCTGCACAAAATGCATATAAACTGTTTCGAGATAAAGCAGCATTCTCTAGGTCTATGAGTGTTGACAGTATGGAGGCTGTGGCTCAAGGTAGGGTGTGGACCGGTAAAGATGCAGCTAGTCTTGGTTTGGTGGATGCAATTGGAGGGTTTTCCAGAGCTGTTGCAATTGCAAAACAAAAGGCAAACATACCACTTGATAGGAAGGTTTCCCTGGTGGAGTTGTCTAGAAGTTCACCATCTTTACCTGAACTTATCAGTAGTGGGGCACGTGCAATATTTGGTCTTCCGTCATTGCTAAGCTTGGACGAAAGACTTAAGGAACTTTCTCAGGAGCTTTCTCCATCTGGAGTGCAAGCTCGAATGGATAGTATTATTCTTCAAGGTCTTGGAGAATATCAAGATGGACAGGTGTTCCTGAAGATTATTAAGGATTATCTCAGCTCTTTCTGA___AACCTGAAACTTGCATGTACATATAAAATGGCTTGTAAAGGTAGTTTGTCTTCTGTTAAAGTAAAGGTGATTATGTCCTATGAACTAAAGTCACCATTGTATAGAAACCCAATTCATTTGTGGAGCTAAACTTGTCACTTCAGACAATAGTTCAACTGAATTGGACTGTTAAGGTCTAAATTGCTACAGTGATAAAACATTTAATATCCAATGCCTGTATTTATTCAACTATATCCAGATCTGAATAACAGAATTCAGTTGGGTTGCTGATTGGCAAAGCTTACCCAATTGGAATTTTTAACCAGACTGGTCTGGACTCTGAACAGCTTCTGTGCTTTTCATGATGTTGGGAAATACA

Fln Alignment:

Contig7123___DESYPSGEFEYKEIEGWSRFLVQLKMFIAPPWERVKKGSVLHMKLRGEILDQLQGSFSSRLSLPKISENFMKAAYDPRISGIYLEIEPLNCAWGKIDEIRRHILDYKKSGKFIAGYIPVCGEKEYYLACACGELYAPPGAYISLYGLKVQATFLGGVLEKAGITPQIQRIGKYKSAGDLLSRKNISEENREMLTVILDNIYENWVQKISSTLGKTKENIEIFLNEGIYKVERLKQEGWITDIKYDDEVTTMLKERLGQKLDKELLLVDYKKYSRVRKWTLGLAGGRDKXXXXXXXXXXXXXXXXXXXXXXGIAGEQFIKKIREVRASKRYKAVILRIDSPGGDALASDLMWREIRLLAAEKPVVASMGDVXXXXXXXXXXXXXVIVSESLTLTGSIGVVTGKLNLNKLYDRIGFNKEVISRGRFAE-LDVEQRPFRPDEEDLFAKSAQNAYKLFRDKAAFSRSMSVDSMEAVAQGRVWTGKDAASLGLVDAIGGFSRAVAIAKQKANIPLDRKXXXXXXXXXXXXXXXXXXXGARAIFGLP--------SLLSLDERLKELSQELSPS-GVQARMDSIILQGLGEYQDGQVFLKIIKDYLSS
I1JWL3______________DEDYPSGQFDFEPVTGWRSFLVKLKMLVAFPWERVQKGSVLTMKLRGQISDQVKSRFSPGLSLPQICENFLKAAYDPRISGIYLHIDSLNCGWGKVEEIRRHILDFKKSGKFVLAYVPLCQEKEYYLASACEEIYAPPSAYFSLFGLTVQASFLKGVLDNIGIEPQVERIGKYKSAGDQLARRTMSEENCEMLTTLLDNIYTNWLDKVSSAKGKTREDIENFINEGVYQVDKLKEEGLISNINYDDEITAMLKERLGVKSDKDLRMVDYRKYSRVRKWTVGIPGGKELIAIIRASGSISRVESQFSVSSSGIIAEKFIEKIRTVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGADVIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELLAAEQRPFRPDEAELFAKSAQHAYKQFRDKAASSRSMTVEKMEEFAQGRVWTGKDAALRGLVDAIGGLSRAIAIAKMKADIPQDRQVTLVEI--------------SRASPSLPEILLGVGSSLVGADRTAKELLQGLTFSDGVQARMDGIKFQTLEEYPFGNPILSIIKDILSS

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
707	33			66	0.997452
708	33			66	0.997452
710		66	33		0.997452
764	25		75		0.996473
767	75		25		0.996473
951		10	90		0.90298
1125	88			11	0.923564
1127		88		11	0.923564
1131	11			88	0.923564
1132		11	88		0.923564
1133	11		88		0.923564
1225		20		80	0.995493
1236			50	50	1.0
1985	10		90		0.90298
1986	90	10			0.90298
2058	85			14	0.993533
2130		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain