SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7108

Length: 3074 nt

UniGene Fasta

>sp_v3.0_unigene7108
ATGGGAAAACACAAACGTGGCTCCCAGAGAGGCCAGACAAATGAGGACCACTCTAATCATCCATTAGCGCTATAAAGGTCGTGACCTTGGCTGTCACTCGATTCTAGAATCCTCTGTGGCCGGATATAAATCAAAAGCCCCTAGGCCCTAGGGAAGGGTTAGGTCAAGGCTGCCCCTCCTTATCCACTTCGCGAAGCAAAATTTCTTTTGTTTCTCATCTGCTTCGTCTCTGCGTTTCTACAGCTCATTGAGCTGATTTTAAAAATCCGAGGATTCTCAGGCTAATTTGCGGCCATTGTGGAGAGGCAGGGTGCAATTTTAGCCATGTTGACTGCTGGTGTTGCCGCTTCCACTGCTATTCATTTTCCGTCATCTCCACGCTATTCTGTCCATGGAGATGCCAAAACGTCCCACAGGAGGTTTTTTGCTTCTCCTGTGGTCTCTAAAAATGCGCTAAAGTGGAGCGCTTTAGTGGGCGGCCATGGGTTTAGCTTGGCCACTAGGAAAGGTTCGAAGTTAAGTAGCCGCAGAGTTGGTGGTGTTAGGTGCGAGGCCACTGTAGCAGAAAAGGAAACAGTAGAATCACCAGCTGAGAAATTTGAATATCAGGCAGAGGTCAGTAGGCTGCTGGATTTGATAGTTCACAGCTTATACAGCCACAAGGAAGTCTTCCTTCGGGAGCTTGTTAGTAATGCAAGTGATGCTCTAGATAAACTGCGGTTTTTAAGTGTGACCGACCCGAGTGTACTTGGAGATGGTGGTGACTTGGAGGTCCGCATAAAACCAGATAAGGAGAATGGGACCATCACCATATTGGATACTGGCATCGGTATGACCAAAGAAGAATTAATTGACTGTCTTGGGACTATAGCTCAGAGTGGAACTAAAAAGTTTTTAGAGACTTTGAAGGAAAATAAGACTGGCCCTGACAACAATTTGATTGGTCAATTTGGTGTAGGCTTCTATTCCGCTTTTCTTGTTGCTGATAAGGTTACTGTCTCAACAAAAAGCCCAAAGTCTGATAAGCAGTATGTGTGGGAAGGAAAAGCTGATACTAGCTCCTATATAATACGGGAGGAGACAGATCCAGAAAATCTTATTGTTAGAGGGACTAAAATAACCCTTTACCTAAAGCCTGATGACAAGCATGACTATGCTGATCCAGAAAGGGTTCGTAACCTGGTTAAGAATTATTCACAGTTTGTCTCTTTCCCAATATACACATGGCAGGAAAAGTCCCAAACGAAGGAGGTTGAGGATGACAGTGCTGAAGTAAAAGAAGGGGAGGAAAAGAAAACTAAGACTGTGACAGAAAAGTATTGGGACTGGGAATTGGCAAATGAAACAAAGCCTCTCTGGATGCGTAATCCCAAAGAGGTTGCATCAGAAGAGTACAATGAGTTTTACAAGAAGGCATTCAATGAATTTCTGGATCCTTTGACATACACTCACTTCACAACTGAGGGTGAAGTAGAGTTCAGAAGTGTCCTTTACATCCCTGGTATGGCTCCCCTTAGCACTGAGGATATAATGAATCCAAAGACTAAGAACATTCGTCTATATGTCAAGCGTGTTTTTATTTCTGATGACTTTGATGGTGAATTGTTTCCACGCTATCTGAGCTTTGTTAAAGGTGTTGTCGATTCAAATGATCTTCCTCTTAATGTATCCAGGGAGATCCTCCAAGAAAGCCGTATTGTTCGTATAATGAAGAGGCGTCTTGTACGGAAGACATTTGATATGATTCAGGGTATTGTGGAAAGTGAGAATAAAGATGATTACAAGAAATTCTGGGAGAACTTTGGAAAATATATCAAATTGGGCTGTATCGAAGACTCAAATAATCATAAACGGATTGCTCCTCTTTTACGGTTCTTCTCATCCATGCATGATGAGGAGATGATTAGCTTGGATGATTATATTGAAAATATGACTGAAAAACAAAATGGTATTTTTTATATTGCTTCAGATAGCATTAAAAGTGCCAGGAGTGCACCATTTTTGGAAAAACTTTTGCAGAAGGATATTGAGGTCCTCTATCTCGTAGACCCAATTGATGAGGTCGCTATTCAAAATCTTCAGACATACAAAGACAAAAAATTTGTTGATATTAGTAAAGAAGACCTGGACCTAGGTGATTTGGACGAAGTGAAGGACAGAGAAGCCGAGAGGGAATATGCTGTACTTTGTGACTGGATGAAGCAACAATTGGGAGATAAAGTAGCAAAAGTTCAAATATCAAAGCGCTTAAGCTCATCCCCATGTGTGCTTGTTGCAGGAAAGTTTGGGTGGTCAGCAAACATGGAAAGGCTTATGAAGGCACAGACTCTGGGTGATACGTCGAGTCTGGAGTTTATGCGTGGAAGACGAATCTTAGAGATAAACCCAGATCACCCAATCATCCAAGATCTCAATGGTGCATGCAAGGATGCTCCTAACAATCCTGAAGCTCAGAGGGCAGTTGAACTTTTGTATGATACTGCACTGATATCTAGTGGATTTGCTCCTGAGAATCCAGCTGAGTTAGGTGGAAAGATTTATGAGATGATGGCTATGGCACTTGGTGGAAGATGGAAAAGCGAGGAATCAGAAAGTGCAGAATTTAAACCATCAGAAAGTGTCGAGGCAGAGGAAAGTGAACCATCCTCTGAAGCAGTAGCTGGAGAAGCATCAGAAGCAGAGATAGTTGAGCCATCTGAAGTACGAACTGAGAGTGATCCTTGGAAGAATTAAGAAAATTCACATGCGAGCTTTGCAGGCTGAAGGATTAGATTCTTGTGATCATGTAAATAATGATTTCTTGTCTGATTGGTTTAGCTGCGGTACGGGAGTTACAAATAACTTCTTCTGTATTTTCAAGGATTTTCACAGTTTGACGAAAGATTAAAATACAAAAGCATGGAAACACTTGAAAAGGGAGATAGTTGAGGTAGGATGTTTCATAACAGGCATGGACATGTTAATGGACATGCTGCAGATTTCTAGTGCATGATCTATAGAATGTTTGAATGTTAAAAATTTACATAATGCTGGTTGCTTCTGCACTAGAAATCTGCAGCATGTCCATTAACATG

Ace file of the UniGene sp_v3.0_unigene7108

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone protein htpG family protein [Arabidopsis thaliana] gb\|AAL32008.1\|AF436826_1 At2g04030/F3C11.14 [Arabidopsis thaliana] gb\|AAD32922.1\| putative heat shock protein [Arabidopsis thaliana] gb\|AAK96633.1\| At2g04030/F3C11.14 [Arabidopsis thaliana] gb\|A	-	-	76%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	45%
Sma3	Chromosome chr1 scaffold_22, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00021159001;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	0.0	-
Sma3	Heat shock protein Hsp90	IPR001404	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5 Chaperone protein htpG family protein chr2:1281983-1285909 FORWARD LENGTH=780	77%
RefSeq	Arabidopsis thaliana	NP_178487.1	Chaperone protein htpG family protein [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002311417.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg: your sequence is shorter than subject: 803 - 834

Fln protein: MLTAGVAASTAIHFPSSPRYSVHGDAKTSHRRFFASPVVSKNALKWSALVGGHGFSLATRKGSKLSSRRVGGVRCEATVAEKETVESPAEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDPSVLGDGGDLEVRIKPDKENGTITILDTGIGMTKEELIDCLGTIAQSGTKKFLETLKENKTGPDNNLIGQFGVGFYSAFLVADKVTVSTKSPKSDKQYVWEGKADTSSYIIREETDPENLIVRGTKITLYLKPDDKHDYADPERVRNLVKNYSQFVSFPIYTWQEKSQTKEVEDDSAEVKEGEEKKTKTVTEKYWDWELANETKPLWMRNPKEVASEEYNEFYKKAFNEFLDPLTYTHFTTEGEVEFRSVLYIPGMAPLSTEDIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMKRRLVRKTFDMIQGIVESENKDDYKKFWENFGKYIKLGCIEDSNNHKRIAPLLRFFSSMHDEEMISLDDYIENMTEKQNGIFYIASDSIKSARSAPFLEKLLQKDIEVLYLVDPIDEVAIQNLQTYKDKKFVDISKEDLDLGDLDEVKDREAEREYAVLCDWMKQQLGDKVAKVQISKRLSSSPCVLVAGKFGWSANMERLMKAQTLGDTSSLEFMRGRRILEINPDHPIIQDLNGACKDAPNNPEAQRAVELLYDTALISSGFAPENPAELGGKIYEMMAMALGGRWKSEESESAEFKPSESVEAEESEPSSEAVAGEASEAEIVEPSEVRTESDPWKN*

Protein Length: 804

Fln nts: ATGGGAAAACACAAACGTGGCTCCCAGAGAGGCCAGACAAATGAGGACCACTCTAATCATCCATTAGCGCTATAAAGGTCGTGACCTTGGCTGTCACTCGATTCTAGAATCCTCTGTGGCCGGATATAAATCAAAAGCCCCTAGGCCCTAGGGAAGGGTTAGGTCAAGGCTGCCCCTCCTTATCCACTTCGCGAAGCAAAATTTCTTTTGTTTCTCATCTGCTTCGTCTCTGCGTTTCTACAGCTCATTGAGCTGATTTTAAAAATCCGAGGATTCTCAGGCTAATTTGCGGCCATTGTGGAGAGGCAGGGTGCAATTTTAGCC_-_ATGTTGACTGCTGGTGTTGCCGCTTCCACTGCTATTCATTTTCCGTCATCTCCACGCTATTCTGTCCATGGAGATGCCAAAACGTCCCACAGGAGGTTTTTTGCTTCTCCTGTGGTCTCTAAAAATGCGCTAAAGTGGAGCGCTTTAGTGGGCGGCCATGGGTTTAGCTTGGCCACTAGGAAAGGTTCGAAGTTAAGTAGCCGCAGAGTTGGTGGTGTTAGGTGCGAGGCCACTGTAGCAGAAAAGGAAACAGTAGAATCACCAGCTGAGAAATTTGAATATCAGGCAGAGGTCAGTAGGCTGCTGGATTTGATAGTTCACAGCTTATACAGCCACAAGGAAGTCTTCCTTCGGGAGCTTGTTAGTAATGCAAGTGATGCTCTAGATAAACTGCGGTTTTTAAGTGTGACCGACCCGAGTGTACTTGGAGATGGTGGTGACTTGGAGGTCCGCATAAAACCAGATAAGGAGAATGGGACCATCACCATATTGGATACTGGCATCGGTATGACCAAAGAAGAATTAATTGACTGTCTTGGGACTATAGCTCAGAGTGGAACTAAAAAGTTTTTAGAGACTTTGAAGGAAAATAAGACTGGCCCTGACAACAATTTGATTGGTCAATTTGGTGTAGGCTTCTATTCCGCTTTTCTTGTTGCTGATAAGGTTACTGTCTCAACAAAAAGCCCAAAGTCTGATAAGCAGTATGTGTGGGAAGGAAAAGCTGATACTAGCTCCTATATAATACGGGAGGAGACAGATCCAGAAAATCTTATTGTTAGAGGGACTAAAATAACCCTTTACCTAAAGCCTGATGACAAGCATGACTATGCTGATCCAGAAAGGGTTCGTAACCTGGTTAAGAATTATTCACAGTTTGTCTCTTTCCCAATATACACATGGCAGGAAAAGTCCCAAACGAAGGAGGTTGAGGATGACAGTGCTGAAGTAAAAGAAGGGGAGGAAAAGAAAACTAAGACTGTGACAGAAAAGTATTGGGACTGGGAATTGGCAAATGAAACAAAGCCTCTCTGGATGCGTAATCCCAAAGAGGTTGCATCAGAAGAGTACAATGAGTTTTACAAGAAGGCATTCAATGAATTTCTGGATCCTTTGACATACACTCACTTCACAACTGAGGGTGAAGTAGAGTTCAGAAGTGTCCTTTACATCCCTGGTATGGCTCCCCTTAGCACTGAGGATATAATGAATCCAAAGACTAAGAACATTCGTCTATATGTCAAGCGTGTTTTTATTTCTGATGACTTTGATGGTGAATTGTTTCCACGCTATCTGAGCTTTGTTAAAGGTGTTGTCGATTCAAATGATCTTCCTCTTAATGTATCCAGGGAGATCCTCCAAGAAAGCCGTATTGTTCGTATAATGAAGAGGCGTCTTGTACGGAAGACATTTGATATGATTCAGGGTATTGTGGAAAGTGAGAATAAAGATGATTACAAGAAATTCTGGGAGAACTTTGGAAAATATATCAAATTGGGCTGTATCGAAGACTCAAATAATCATAAACGGATTGCTCCTCTTTTACGGTTCTTCTCATCCATGCATGATGAGGAGATGATTAGCTTGGATGATTATATTGAAAATATGACTGAAAAACAAAATGGTATTTTTTATATTGCTTCAGATAGCATTAAAAGTGCCAGGAGTGCACCATTTTTGGAAAAACTTTTGCAGAAGGATATTGAGGTCCTCTATCTCGTAGACCCAATTGATGAGGTCGCTATTCAAAATCTTCAGACATACAAAGACAAAAAATTTGTTGATATTAGTAAAGAAGACCTGGACCTAGGTGATTTGGACGAAGTGAAGGACAGAGAAGCCGAGAGGGAATATGCTGTACTTTGTGACTGGATGAAGCAACAATTGGGAGATAAAGTAGCAAAAGTTCAAATATCAAAGCGCTTAAGCTCATCCCCATGTGTGCTTGTTGCAGGAAAGTTTGGGTGGTCAGCAAACATGGAAAGGCTTATGAAGGCACAGACTCTGGGTGATACGTCGAGTCTGGAGTTTATGCGTGGAAGACGAATCTTAGAGATAAACCCAGATCACCCAATCATCCAAGATCTCAATGGTGCATGCAAGGATGCTCCTAACAATCCTGAAGCTCAGAGGGCAGTTGAACTTTTGTATGATACTGCACTGATATCTAGTGGATTTGCTCCTGAGAATCCAGCTGAGTTAGGTGGAAAGATTTATGAGATGATGGCTATGGCACTTGGTGGAAGATGGAAAAGCGAGGAATCAGAAAGTGCAGAATTTAAACCATCAGAAAGTGTCGAGGCAGAGGAAAGTGAACCATCCTCTGAAGCAGTAGCTGGAGAAGCATCAGAAGCAGAGATAGTTGAGCCATCTGAAGTACGAACTGAGAGTGATCCTTGGAAGAATTAA___GAAAATTCACATGCGAGCTTTGCAGGCTGAAGGATTAGATTCTTGTGATCATGTAAATAATGATTTCTTGTCTGATTGGTTTAGCTGCGGTACGGGAGTTACAAATAACTTCTTCTGTATTTTCAAGGATTTTCACAGTTTGACGAAAGATTAAAATACAAAAGCATGGAAACACTTGAAAAGGGAGATAGTTGAGGTAGGATGTTTCATAACAGGCATGGACATGTTAATGGACATGCTGCAGATTTCTAGTGCATGATCTATAGAATGTTTGAATGTTAAAAATTTACATAATGCTGGTTGCTTCTGCACTAGAAATCTGCAGCATGTCCATTAACATG

Fln Alignment:

Contig7108___EATVAEKETVESPAEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDPSVLGDGGD--LEVRIKPDKENGTITILDTGIGMTKEELIDCLGTIAQSGTKKFLETLKENKTGPDNNLIGQFGVGFYSAFLVADKVTVSTKSPKSDKQYVWEGKADTSSYIIREETDPENLIVRGTKITLYLKPDDKHDYADPERVRNLVKNYSQFVSFPIYTW--------------------QEKSQTKEVEDDSAXXXXXXXXXXXXXXXXYWDWELANETKPLWMRNPKEVASEEYNEFYKKAFNEFLD--PLTYTHFTTEGEVEFRSVLYIPGMAPLSTEDIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMKRRLVRKTFDMIQGIVE---------------------SENKDDYKKFWENFGKYIKLGCIEDSNNHKRIAPLLRFFSSMHDEEMISLDDYIENMTEKQNGIFYIASDSIKSARSAPFLEKLLQKDIEVLYLVDPIDEVAIQNLQTYKDKKFVDISKEDLDLGDLDEVKDREAEREYAVLCDWMKQQL-GDKVAKVQISKRLSSSPCVLVAGKFGWSANMERLMKAQTLGDTSSLEFMRGRRILEINPDHPIIQDLNGACKDAPNNPEAQRAVELLYDTALISSGFAPENPAELGGKIYEMMAMAL
A7YAU9______________ESESISRKTLRANAQKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFMALTDKNVLGEGDNTRLDIKIKLDKENKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFLEQMQK---GGDLNLIGQLGVGFYSVYLVADHVEVISKN-NDDKQYIWESKAD-GAFAVSEDTENEPL-GRGTEIRLHLK-DEASEYLDETKLKDLVKKYSEFINFPIYLWASKEVDVEVPADEESESSEEEEKSESSSDEEESEAEETESKSKTKTVKETTYEWELLNDVKAVWLRNPKEVTDEEYAKFYHSLAKDFSEEKPLAWSHFTAEGDVEFKSILFIPPKAPHDLYESYCNAKANIKLYVRRVFISDEFE-EFLPKYLGFLMGIVNSDTLPLNVSREMLQQHNSLNTIKKKLIRKALDMIRRIAEEDLDESDAKGKTDAESESEPDTEKKGKYVKFWNEFGKSIKLGIIEDASNRNHLAKLLRFESTKSGSKLASLDQYISRMKPGQKDIYYITGSSKEQLEKSPFLEKLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKIG--KDSKDKEIKDSFKELTNWWKDVLSSENVDSVKISNRLDNTPGVVVTSKYGWSANMERIMQSQTLSDANRQSYMRGKRVLEINPKHPIIKELRERVTQNPEEENIKQTARLIYQTALMESGFILNDPKEFATSIYSTIKTTL

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
189	80	20			0.995493
190		80	20		0.995493
191			20	80	0.995493
192			20	80	0.995493
193		80	20		0.995493
276	83		16		0.994512
774		10	90		0.90298
775	90		10		0.90298
777		90	10		0.90298
778		90	10		0.90298
882		87		12	0.992554
921		11	88		0.923564
923		88		11	0.923564
955	12		87		0.992554
956	12		87		0.992554
1099		85	14		0.993533
1100			14	85	0.993533
1101			14	85	0.993533
1115		14	85		0.993533
1249	88		11		0.923564
1250	88		11		0.923564
1293	85	14			0.993533
1295	85			14	0.993533
1296			85	14	0.993533
1359		87		12	0.992554
1671	89	10			0.999919
1820	90	10			0.90298
1822		10		90	0.90298
1999		66		33	0.997452
2000		66		33	0.997452
2001	66			33	0.997452
2174	16		83		0.994512
2259	75		25		1.0
2490			90	10	0.90298
3013		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain