SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7107

Length: 1975 nt

UniGene Fasta

>sp_v3.0_unigene7107
AGCGGGCCGCGGGTTCGATCCCAAGATAAGGAAAAAAGAAAGAAAATTTCATGAATTGGGCCTGTAGGTTCCAGTCGCAAAATTAAAACCTATCGGTCTCGTCTTCGAGCTAAAGTTGGGGAAAAAGCTAAGCTCTCAGGGAATGGGTTCCCGCACAATGCTGTCCTCTAATGGCGGCCGGACACCTCAGTTCCAACCACTCGTTCGACAGAATTCTTTATACAATTTAACGCTGGAGGAGGTCCAGAACCAGCTCGGGGACGCCAGCAAGCCGCTTAGCAGCATGAACATGGACGAGCTCCTGAAGAACATTTGGACACAAGAGGAAAGCCAGGCTATATCCATGGCGATCGGCAACGGGCCCATGAACGGCGTTCCTCCCAACTCTGCCCCTGCCAGCGGTGGTTTGCAGCGTCAAGGGAGCCTTACAATTCCCAGAACTCTCAGCCGCAAGACTGTGGACGAGGTGTGGAGGGATATTCAGCAGAGCCAGGGAAAGAGCAACGAAGAGAAGAAGCCGCAGCAGAGGCAATCCACCTTTGGTGAAATGACCCTGGAGGATTTCTTAGTGAAAGCCGGGGTAGTCAGGGAGGACAACAATGGCAATAGTAATAATAATAACAGTAGTGCTGTTACTGTCGGTATTGCAGAGAGTCCCCAGCCAGTCTCGGTTTGCGGCGTGCCCACTGCTGGGATAGGGATGGATGCAATGGCAGCAGCACAAAATTTGCAGCAACAGGCAGAGTGGTACCAGTATCAACTCAACACTGCCCAGCAGCAGCAGCAGCAGCAGCAACTACAGCATCCACAACAAGTACAAGCTCCTCCAATGCCTTTAGGATTACATCCACATCCACCGCCACCACCTCGACCGCCATTACCACAACCTCCTCAAATAGGAATGCCATCTTCTATGCCTGTTTCAATGCCATCATCACTGCCAAATGCAGTGGTGTCGGCAGAGTCTATGCTTCCAAGACCAGGACCTAATTTGTCCTCAGCTCATATGCTTCATTCCAGTCAATATTCTTCCATGGTATCATTGCCAGGACAATTAGCCCAAGGTTCATCAAATCAAATTATAACTCAAGTACCTCAATCTCATGCGCTTGGGCAGGTTTCTGTGTCAAACCTTCCAACTGGCATAGGAGGCTTTTTGAATGGTGTTACAAGTGTTTTGGAAAGTCAAAATCCTGTTTCTGGAGCTCCTCCTTTTCCATCTAACACAGTTGGCATGCAGCCTCTACCTCCAGCAGTAATTACATCAACTTCTGGAACATACAACAGGCCGCAAAGTGGACCATTACCACCGGTGTCAATATCTCCAGTGCTCAATACGTACCAGTCAGCTGCTGCTCAAAACATGATGGATGTGAGGGGGCCCGGTACAAACCTAGGAACGAATGTTGGTCTTGGGATGGGAATTGGCATGGGTGTTCCACCTCACCCTCATGGTCCCACACCACCTCAAATGTGATGATTAGTCACTCGAAATTGGTTATTCAAAACGCTAAACCTAAACTGTAGAGTTTTGCCCCATGGAATGTAGTCCTGACTCCCATGCTTCCGAAGTTTTTGTGGGAGACTGTAAGACTTTATATCAACATTTGTTGTAATTTGAGCTACAAATCTTGAATTCTTGTCAAATAGACTAGGTAGATTATTTCTTTTTAGTTTTAGAAACACCAATCATACTCAGCAATTGTGGGCATGTTTTACGAATCACTTAGACAGTGTTCTCCACTTTTCTAAGCACAACAGTATTGTCTGTTGCCATTTTAATGAATGGGTTCCACGCGTACTAAAACGAGGCAGAATTTCCTGAAAAGCAACTGTTTCATGATTGCAGGACAATTTTGGTGATGATAAGAATAGAGAACTTGTTTTTGGTCTTTATGCATGCTTGTAAAGTGGATGGCTTGTAGTATAAGTCTTGCTTGTGCCAGAAATTCCATAGGAATTCTGTTGCAGGCAA

Ace file of the UniGene sp_v3.0_unigene7107

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BZIP domain class transcription factor n=2 Tax=Malus x domestica RepID=D9ZIQ3_MALDO	-	-	7.0e-38	60%
FL-Next	sp=ABSCISIC ACID-INSENSITIVE 5-like protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Sma3	BZIP transcription factor	-	-	9.113e-17	-

Source	Gene names
Sma3	ABF2; ABF4; ABI5; AREB2; AREB3; At2g41070; At3g19290; At3g56850; B1342C04.26; BZIP12; BZIP38; BZIP66; DPBF3; DPBF4; EEL; GSVIVT00002670001; GSVIVT00017354001; MVI11.7; OJ1004_A11.20; Os02g0766700; Os06g0211200; Os08g0472000; Os09g0456200; OsI_09065; OsI_2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	cAMP response element binding (CREB) protein	IPR001630	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Basic leucine zipper	IPR011700	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G49720.2	ABF1 abscisic acid responsive element-binding factor 1 chr1:18400826-18402362 FORWARD LENGTH=403	1.0e-38	50%
RefSeq	Arabidopsis thaliana	NP_564551.1	abscisic acid-insensitive 5-like protein 4 [Arabidopsis thaliana]	1.0e-38	50%
RefSeq	Populus trichocarpa	XP_002316457.1	predicted protein [Populus trichocarpa]	1.96182e-44	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9M7Q5

Fln msg: your sequence is longer than subject: 445 - 392

Fln protein: MGSRTMLSSNGGRTPQFQPLVRQNSLYNLTLEEVQNQLGDASKPLSSMNMDELLKNIWTQEESQAISMAIGNGPMNGVPPNSAPASGGLQRQGSLTIPRTLSRKTVDEVWRDIQQSQGKSNEEKKPQQRQSTFGEMTLEDFLVKAGVVREDNNGNSNNNNSSAVTVGIAESPQPVSVCGVPTAGIGMDAMAAAQNLQQQAEWYQYQLNTAQQQQQQQQLQHPQQVQAPPMPLGLHPHPPPPPRPPLPQPPQIGMPSSMPVSMPSSLPNAVVSAESMLPRPGPNLSSAHMLHSSQYSSMVSLPGQLAQGSSNQIITQVPQSHALGQVSVSNLPTGIGGFLNGVTSVLESQNPVSGAPPFPSNTVGMQPLPPAVITSTSGTYNRPQSGPLPPVSISPVLNTYQSAAAQNMMDVRGPGTNLGTNVGLGMGIGMGVPPHPHGPTPPQM*

Protein Length: 446

Fln nts: AGCGGGCCGCGGGTTCGATCCCAAGATAAGGAAAAAAGAAAGAAAATTTCATGAATTGGGCCTGTAGGTTCCAGTCGCAAAATTAAAACCTATCGGTCTCGTCTTCGAGCTAAAGTTGGGGAAAAAGCTAAGCTCTCAGGGA_-_ATGGGTTCCCGCACAATGCTGTCCTCTAATGGCGGCCGGACACCTCAGTTCCAACCACTCGTTCGACAGAATTCTTTATACAATTTAACGCTGGAGGAGGTCCAGAACCAGCTCGGGGACGCCAGCAAGCCGCTTAGCAGCATGAACATGGACGAGCTCCTGAAGAACATTTGGACACAAGAGGAAAGCCAGGCTATATCCATGGCGATCGGCAACGGGCCCATGAACGGCGTTCCTCCCAACTCTGCCCCTGCCAGCGGTGGTTTGCAGCGTCAAGGGAGCCTTACAATTCCCAGAACTCTCAGCCGCAAGACTGTGGACGAGGTGTGGAGGGATATTCAGCAGAGCCAGGGAAAGAGCAACGAAGAGAAGAAGCCGCAGCAGAGGCAATCCACCTTTGGTGAAATGACCCTGGAGGATTTCTTAGTGAAAGCCGGGGTAGTCAGGGAGGACAACAATGGCAATAGTAATAATAATAACAGTAGTGCTGTTACTGTCGGTATTGCAGAGAGTCCCCAGCCAGTCTCGGTTTGCGGCGTGCCCACTGCTGGGATAGGGATGGATGCAATGGCAGCAGCACAAAATTTGCAGCAACAGGCAGAGTGGTACCAGTATCAACTCAACACTGCCCAGCAGCAGCAGCAGCAGCAGCAACTACAGCATCCACAACAAGTACAAGCTCCTCCAATGCCTTTAGGATTACATCCACATCCACCGCCACCACCTCGACCGCCATTACCACAACCTCCTCAAATAGGAATGCCATCTTCTATGCCTGTTTCAATGCCATCATCACTGCCAAATGCAGTGGTGTCGGCAGAGTCTATGCTTCCAAGACCAGGACCTAATTTGTCCTCAGCTCATATGCTTCATTCCAGTCAATATTCTTCCATGGTATCATTGCCAGGACAATTAGCCCAAGGTTCATCAAATCAAATTATAACTCAAGTACCTCAATCTCATGCGCTTGGGCAGGTTTCTGTGTCAAACCTTCCAACTGGCATAGGAGGCTTTTTGAATGGTGTTACAAGTGTTTTGGAAAGTCAAAATCCTGTTTCTGGAGCTCCTCCTTTTCCATCTAACACAGTTGGCATGCAGCCTCTACCTCCAGCAGTAATTACATCAACTTCTGGAACATACAACAGGCCGCAAAGTGGACCATTACCACCGGTGTCAATATCTCCAGTGCTCAATACGTACCAGTCAGCTGCTGCTCAAAACATGATGGATGTGAGGGGGCCCGGTACAAACCTAGGAACGAATGTTGGTCTTGGGATGGGAATTGGCATGGGTGTTCCACCTCACCCTCATGGTCCCACACCACCTCAAATGTGA___TGATTAGTCACTCGAAATTGGTTATTCAAAACGCTAAACCTAAACTGTAGAGTTTTGCCCCATGGAATGTAGTCCTGACTCCCATGCTTCCGAAGTTTTTGTGGGAGACTGTAAGACTTTATATCAACATTTGTTGTAATTTGAGCTACAAATCTTGAATTCTTGTCAAATAGACTAGGTAGATTATTTCTTTTTAGTTTTAGAAACACCAATCATACTCAGCAATTGTGGGCATGTTTTACGAATCACTTAGACAGTGTTCTCCACTTTTCTAAGCACAACAGTATTGTCTGTTGCCATTTTAATGAATGGGTTCCACGCGTACTAAAACGAGGCAGAATTTCCTGAAAAGCAACTGTTTCATGATTGCAGGACAATTTTGGTGATGATAAGAATAGAGAACTTGTTTTTGGTCTTTATGCATGCTTGTAAAGTGGATGGCTTGTAGTATAAGTCTTGCTTGTGCCAGAAATTCCATAGGAATTCTGTTGCAGGCAA

Fln Alignment:

Contig7107___MGSRTMLSSNGGRTP---QFQPLVRQNSLYNLTLEEVQNQLGDASKPLSSMNMDELLKNIWTQEESQAISMAIGNGPMNGVPPNSAPASGGLQRQGSLTIPRTLSRKTVDEVWRDIQQSQGKS-NEEKKPQQRQSTFGEMTLEDFLVKAGVVRED
Q9M7Q5______________MGTHIDINNLGGDTSRGNESKPLARQSSLYSLTFDELQSTLGEPGKDFGSMNMDELLKNIWTAEDTQAFMTTTSSVAAPG-PSGFVPGGNGLQRQGSLTLPRTLSQKTVDEVWKYLNSKEGSNGNTGTDALERQQTLGEMTLEDFLLRAGVVKED

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
799	25			75	0.996473
1029	16			83	0.994512
1227	75		25		0.996473
1263	75		25		0.996473
1403	11		88		0.923564
1662			28	71	1.0
1670		12		87	0.992554
1671	12			87	0.992554
1690	66		33		1.0
1749			27	72	1.0
1763		27		72	1.0
1809		66		33	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
610	621	TAA TAA TAA TAA	12
773	795	CAG CAG CAG CAG CAG CAG CAG CA	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain