SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7106

Length: 1664 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene7106 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to oligopeptide transporter, putative n=1 Tax=Vitis vinifera RepID=UPI0001985618	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Chromosome chr18 scaffold_122, whole genome shotgun sequence	-	-	7.695e-25	-

Source	Gene names
Sma3	At1g22540; At1g22550; At1g22570; At1g62200; At1g72120; At1g72130; At1g72130/T9N14_15; At1g72140; At2g02020; At2g02040; At2g37900; At2g40460; At3g54140; At5g01180; At5g46050; B1026C12.10; B1377B10.10; F12K8.11; F12K8.12; F12K8.8; F14H20.11; F19K23.13; F24B

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	-
Sma3	dipeptide transporter activity	GO:0042936	Molecular Function	-
Sma3	tripeptide transporter activity	GO:0042937	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	dipeptide transport	GO:0042938	Biological Process	-
Sma3	tripeptide transport	GO:0042939	Biological Process	-
Sma3	response to leucine	GO:0043201	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G22540.1	Major facilitator superfamily protein chr1:7964202-7966222 FORWARD LENGTH=557	50%
RefSeq	Arabidopsis thaliana	NP_173670.2	putative peptide/nitrate transporter [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002327271.1	proton-dependent oligopeptide transporter, partial [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, atg_distance in limit (1-15): atg_distance = 7, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 543 - 604

Fln protein: MEESLLATSEHDLDRRGGRPVNKALATAWKSSLFIIGVEVAERMTYYGIGSNLITYLINVLHQSTATAAKNVNIWSGVTATLPFLGAFLADAYWGRYRTIVASSIVYLLGLTLLTASVSFKFLRPPPCIYTSSSCSEATPVQNGLFFCSLYLIALGTGGHKPCIEAFGADQFDGEDPEENRYRSSFFNWWYFGQCFGALIALTVLLYVEDYIGWGVGFGIPTVAMALALSLFLYGSKFYRHQVIFSSPLNGQKTVPDTEVGELLVNKSRIKLTHTDQFRSLDKGCPEKSAHDAVLSAKEVNLFARLIPIWVTCLMYGVVFAQCSTFFTKQGSTMDRKIIGHIEIPPASLQCFIALSILVLVPVYDWIFVPLAKTFTGLEHGITVLQRVGFGIFVSVLAMVVAALTELKRLKVAKDNGLVDLPTATIPMTIFWLLPQYILYGISEVFAMVGMQEYFYDQMPNRMRSLGIAVFLSVLGIGSFLSGIVISIVDEISSRSKEGSWFQDNLNTAHLDYFYWLLAALSALNLCLYIYFPAAVMLQNWRR

Protein Length: 544

Fln nts: CCTCATCATCGGCTGGAATGGCCACAGTATCATGA_-_ATGGAAGAATCTCTTCTTGCTACGTCTGAACATGATCTCGATCGCAGAGGAGGACGCCCTGTCAACAAAGCTTTGGCTACAGCTTGGAAATCATCCCTTTTCATCATTGGGGTTGAGGTTGCAGAGAGAATGACCTACTATGGCATAGGCTCCAATCTCATAACATACCTAATCAATGTTCTTCACCAGAGCACTGCCACTGCAGCCAAGAATGTCAACATATGGTCCGGAGTCACAGCAACACTTCCTTTTCTTGGGGCCTTTCTTGCAGATGCATATTGGGGTCGCTACAGGACCATTGTGGCTTCCTCCATCGTTTACTTACTGGGATTAACCTTATTGACTGCATCGGTCTCCTTTAAATTTCTGAGACCACCCCCATGTATTTACACTTCAAGCTCTTGCTCAGAAGCCACACCTGTTCAGAATGGGCTTTTTTTCTGCTCACTTTATTTGATAGCATTGGGAACAGGAGGCCATAAACCTTGTATAGAAGCATTTGGTGCGGACCAGTTTGATGGTGAAGACCCAGAAGAGAACAGATATAGGAGTTCCTTCTTTAATTGGTGGTACTTTGGACAGTGTTTTGGTGCTTTGATTGCACTTACGGTACTTCTTTACGTTGAAGACTATATAGGATGGGGTGTGGGGTTTGGCATCCCAACTGTAGCTATGGCTCTGGCTCTTTCTCTCTTTCTTTATGGTTCTAAGTTTTATAGGCACCAAGTGATTTTCAGCAGTCCACTCAATGGCCAAAAAACAGTACCTGATACTGAAGTTGGAGAATTGCTGGTGAATAAATCAAGAATAAAGCTCACCCACACAGATCAATTCAGATCTCTTGACAAAGGTTGCCCGGAAAAATCAGCTCATGACGCTGTATTGAGTGCCAAAGAGGTCAATCTGTTTGCACGATTGATTCCTATTTGGGTAACATGTTTAATGTATGGGGTTGTCTTTGCACAGTGTTCTACTTTCTTCACAAAACAGGGCAGCACAATGGATAGAAAGATTATTGGACATATTGAGATCCCTCCTGCATCCCTGCAGTGTTTCATAGCCTTAAGTATTCTTGTGCTTGTGCCTGTATATGACTGGATCTTTGTTCCACTGGCCAAAACATTTACAGGTCTCGAGCATGGCATTACGGTGCTCCAAAGGGTAGGATTCGGGATATTCGTTTCTGTTCTTGCCATGGTAGTTGCGGCACTGACAGAACTCAAAAGACTTAAAGTAGCAAAGGATAATGGTTTAGTAGACCTGCCCACTGCAACAATTCCAATGACCATCTTTTGGTTGCTTCCACAATACATTCTTTATGGCATATCAGAAGTCTTTGCAATGGTGGGAATGCAAGAGTATTTTTATGATCAGATGCCCAACAGAATGAGAAGCTTGGGTATTGCAGTGTTTTTGAGTGTACTTGGAATTGGTAGCTTCTTGAGTGGCATTGTTATATCCATTGTTGATGAGATCAGCAGCAGAAGCAAAGAAGGAAGTTGGTTCCAAGACAATCTGAACACAGCTCATTTGGACTACTTTTATTGGCTTCTGGCTGCACTTAGTGCACTCAATCTCTGCTTATACATCTATTTTCCAGCTGCTGTAATGTTACAAAATTGGAGGAGA

Fln Alignment:

Contig7106___EESLLATSEHDLDRRG-----GRPVNKALATAWKSSLFIIGVEVAERMTYYGIGSNLITYLINVLHQSTATAAKNVNIWSGVTATLPFLGAFLADAYWGRYRTIVASSIVYLLGLTLLTASVSFKFLRPPPCIYTSSSCSEATPVQNGLFFCSLYLIALGTGGHKPCIEAFGADQFDGEDPEENRYRSSFFNWWYFGQCFGALIALTVLLYVEDYIGWGVGFGIPTVAMALALSLFLYGSKFYRHQVIFSSPLN--------------------GQKTVPDTEVGELLVNKSRIKLTHTDQFRSLDKGCPEKSAHD----------AVLSAKEVNLFARLIPIWVTCLMYGVVFAQCSTFFTKQGSTMDRKIIGHIEIPPASLQCFIALSILVLVPVYDWIFVPLAKTFTGLEHGITVLQRVGFGIFVSVLAMVVAALTELKRLKVAKDNGLVDLPTATIPMTIFWLLPQYILYGISEVFAMVGMQEYFYDQMPNRMRSLGIAVFLSVLGIGSFLSGIVISIVDEISSRSKEGSWFQDNLNTAHLDYFYWXXXXXXXXXXXLYIYF
A9NWU3______________ESPLLATPDNDLAEDGSTDLKGKPVRKSLTGGWTASLLIIGIEIAERLAYYGIASNLVTYLTNIMHQTTVTAVKNVNVWAGTASMLPLFGAFVADSYLGRYRTILISSIVYLLGLSLLTLSASLSSFRPPPCDITSYTCLKASGSQVGFFFFSLYLVALGQGGHKPCLQAFGADQFDERDPEERKYRSSFFNWWYFGMCSGLVVSISVLMYIQENVGWGLGFGIPTMAMAIALTVFLCGTRLYRHKLPGASPLTRIAQVFVATILKWNVPVPSQGEKNIYVIQEEQLLKGEKSRELLPKNQLRFLDKATVAVDLDYKHKDINWRLCTVTQVEEAKLVLRLLPIWVACLMYGVVFAQSPTFFTKQGSTMDRKIGENFEIPAASLQSFISLSILVLVPVYDRIFVPVARSITKNERGITLLQRIGIGIFISILSMTVAALTEMKRLQVAKDYGFEDMPHATIPLSIFWLLPQYILFGISDVFTMIGLQEYFYDQMPDTMRSVGIALYLSVFGIGSFLSSFFISIIEELSSGGKEQSWFADNLNRAHLDYFYWFLAALSALFLCIYVTF

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
1143	75		25		0.996473
1220	14		85		0.993533
1221	14	85			0.993533
1223			14	85	0.993533
1224		85		14	0.993533
1307	83			16	0.994512
1309	16			83	0.994512
1310	83		16		0.994512
1311	83			16	0.994512
1313	16			83	0.994512
1314	83	16			0.994512
1316	83		16		0.994512
1318		16	83		0.994512
1320	16			83	0.994512
1324		16	83		0.994512
1327	83	16			0.994512
1492	80	20			0.995493
1493		20		80	0.995493
1495			80	20	0.995493
1536			75	25	0.996473
1538	25		75		0.996473
1539	75		25		0.996473
1543		25		75	0.996473
1544	25			75	0.996473
1545			25	75	0.996473
1551		75	25		0.996473
1553		25	75		0.996473
1554	25			75	0.996473
1555	75	25			0.996473
1557	25	75			0.996473
1559	75		25		0.996473
1633	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain