SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7089

Length: 2465 nt

UniGene Fasta

>sp_v3.0_unigene7089
CGTCGTGACCTTGGATGGCAATCTGACTCCGGATCGATCCCCTGCCAGATGATCTTCCCCAAGCTCACAGAATCTGCAATTCTGTGTTCGATTTCTATGAATTAATGGAATATTATGGCAATAGTTCTGCAATGGCGAGATATCTAGGTTCCGCGGTTGATCCTCCTCCTCCTGATTGGAATTCGCAACATGTTGCCGCGGATTTGGGCATGGAGGAGGCAATGCGGCAAATGAACCTGCAATCTCATGATGTTGCAGAAAGGGGACTCTCTGGACCCTTACCAGAGAGACCAGGAGAGATTGATTGCGCACATTACATGAGGACAGGAATTTGCGGTTTTGGCATGACCTGCCGGTTTAATCACCCCCCTAGAAGGAATATTGTTGCAGCAGTTGGGAGAAACAGAGGCGAGTACCCTGAGCGTCCTGGTGATCCTGAATGTCAGCATTTTGTAAAGACAGGAACTTGCAAATTTGGTGCTACCTGCAAATACCATCACCCAAAATACAGGGCTGGAACATCAGACTGGCAGCAACTGAATGCTCTTGGCTACCCATTGCGCCTGAATGAGAAGGAATGCTCTCACTATGTTAAAACAGGACAGTGCAAGTTTGGTGTCACTTGTAAATATCATCATCCACAGCCAGTTGGACCATCAGTTGCAATTCCTGGACCTTCTTCATATTATCCAACTGGACCTTCTTTCTCAATACCCAGTCCTCAACAATATGCGGGAGGGCTAACAACATGGCCAATTTCAAGGACGCCACTAATGGCCAACCCCTATTTGCAAGGCCCCTCTACTTATGTACCTTTCGTGATTCCCCATGGAATGATGCCAGTTCCTGGCTGGAACTCTTTTCATGGACAAGTGGGTTCTATAACTTCTCGTGATGTGGGGCAACAAGCACCTGGAACTGGTTTATTCTATGGCCCTAGGTACCAAACAGATGGAATGAACCCTAGTATTCAGGGAGCACTGGCTTCATATTCATCTCGATCAGGTTCAATGGGGATTCCATCAACCAATACACAAATGGAGCATATGTTTCCAGAGAGACATGGTCAACCAGAATGTCAATTTTACATGAGAACAGGGTACTGTAAATATGGTTCAACATGTAAATATCATCATCCAAGGGACAGGACTGTTCCATTGACAAGCTGTACTCTCAGCCCTCTCGGCTTACCACTGCGTTCGGGGGCCCAAACATGTTCTTTCTATGTTCGTCAAGGATTTTGCAAATATGGACCAACTTGCAAATATGACCACCCTATGGGGACTTTGAGTTACAGTCCATCTGCATCTTCACTAGTGGATATGCCAGTTGCTCCTTATCCAGTAGGATCGTCACCAGCTACTCTTGCTCCATCATTTTCATCTACAGAATTAAGGACAGAAACTACTGCAGGGCCGTTCAAAGAATCAATTCCTACTCCAGAAACCCCTTTGTCATCTTCTGCTGGTGAATCTTTAGATTTAGGAGCACAAGGTCCACTTCTAAGCACCTCAACAGGTTTGACTTCCTCTGAAAGCGAGGAAAATCCTCTGGTTAAGAAGTCAAATCAGGTTTCTGTCCTTGCAAATGGGATTGCAAAGGAGGGGGACATTCCCATTTCAAATTGAAGGCATCATGTAAGCAGATCCTAATGGTTGTGTCTGGAGTCTTCTGAAAAGTGGTCATTCTGTTCTATATCTTTCATGACTGTCACATCCCCATTGTGCTGAGAAAGCTGATGGAAATTTACTGAGAAAATACATCTGGTTTGGGACTAAGCCTTCTTCCTTTGGTTTCTGTGTGAATTTCTGGAACTCCAAGTTTGAAGCCCGTTTTCCGATTTCACTTCCACGGGTCCAACGCTGTGATCCAGTTCCACGAGGCTTGCCCCAAATTAATGTGATATATTTTTTCTGGTCTTATGCTTAACCGCACTTTATTAATTTCATTCACAATTTTTTGTTGTTGTTAAATTTACCCATGCATTTTTCTTGTCATTGAGTTGACATTGGACAAGCCTTGTTTAGATTCTATTTGATGGTTCTGTAATTTATTCATTGAGCTACCCTGCCCTGATATTTTGATGCACATTACTGGGTTGTGGCTCTTGGGCATGCTGTGACATTGATGAGTTCTTTCTCGAGTTGGAAGCAGAGCTCTACCAGACCTCATGTGCCTTCTTTGATTCCATCTAATTTTTTGAAGCATGCTCCATCCATAGTTCATTAAGAATTGGCAGTGGCTTCCAAGGAATGTATATATCTCATGCAGAAAGCCAGAGAATTATGTTTGGCAATGTTTTATTCTTTTTCTTTGAGGGGAGAGCATGCTTTAGTCTCAACCACTAGGTTTTGGCATTTGTAATACAACCAACGCTGGTCTTTTTGGAACGAGTTATCCTTATGTAGACATGAAATGTGCCAAATTTCTTTATGAGAATAAAAGGAATGATATATTTTTAATTC

Ace file of the UniGene sp_v3.0_unigene7089

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Zinc finger CCCH domain-containing protein ZFN-like gb\|AAD45720.1\| zinc finger protein [Pisum sativum]	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Zinc finger CCCH type domain-containing protein ZFN-like 3	-	-	3.585e-08	-

Source	Gene names
Sma3	At1g48195; At2g47850; At3g02830; At3g06410; At5g16540; At5g18550; F13E7.23; F17A22.24; F21D18; F24P17.12; GSVIVT00019796001; GSVIVT00023577001; GSVIVT00025101001; GSVIVT00025958001; LOC_Os01g15350; LOC_Os01g15460; LOC_Os01g68860; LOC_Os11g28270; LOC_Os12g

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nuclease activity	GO:0004518	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G47850.1	Zinc finger C-x8-C-x5-C-x3-H type family protein chr2:19595953-19598119 FORWARD LENGTH=468	47%
RefSeq	Arabidopsis thaliana	NP_182306.2	zinc finger CCCH domain-containing protein 32 [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002325901.1	predicted protein, partial [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PR62

Fln msg: your sequence is longer than subject: 508 - 468

Fln protein: MEYYGNSSAMARYLGSAVDPPPPDWNSQHVAADLGMEEAMRQMNLQSHDVAERGLSGPLPERPGEIDCAHYMRTGICGFGMTCRFNHPPRRNIVAAVGRNRGEYPERPGDPECQHFVKTGTCKFGATCKYHHPKYRAGTSDWQQLNALGYPLRLNEKECSHYVKTGQCKFGVTCKYHHPQPVGPSVAIPGPSSYYPTGPSFSIPSPQQYAGGLTTWPISRTPLMANPYLQGPSTYVPFVIPHGMMPVPGWNSFHGQVGSITSRDVGQQAPGTGLFYGPRYQTDGMNPSIQGALASYSSRSGSMGIPSTNTQMEHMFPERHGQPECQFYMRTGYCKYGSTCKYHHPRDRTVPLTSCTLSPLGLPLRSGAQTCSFYVRQGFCKYGPTCKYDHPMGTLSYSPSASSLVDMPVAPYPVGSSPATLAPSFSSTELRTETTAGPFKESIPTPETPLSSSAGESLDLGAQGPLLSTSTGLTSSESEENPLVKKSNQVSVLANGIAKEGDIPISN*

Protein Length: 509

Fln nts: CGTCGTGACCTTGGATGGCAATCTGACTCCGGATCGATCCCCTGCCAGATGATCTTCCCCAAGCTCACAGAATCTGCAATTCTGTGTTCGATTTCTATGAATTA_-_ATGGAATATTATGGCAATAGTTCTGCAATGGCGAGATATCTAGGTTCCGCGGTTGATCCTCCTCCTCCTGATTGGAATTCGCAACATGTTGCCGCGGATTTGGGCATGGAGGAGGCAATGCGGCAAATGAACCTGCAATCTCATGATGTTGCAGAAAGGGGACTCTCTGGACCCTTACCAGAGAGACCAGGAGAGATTGATTGCGCACATTACATGAGGACAGGAATTTGCGGTTTTGGCATGACCTGCCGGTTTAATCACCCCCCTAGAAGGAATATTGTTGCAGCAGTTGGGAGAAACAGAGGCGAGTACCCTGAGCGTCCTGGTGATCCTGAATGTCAGCATTTTGTAAAGACAGGAACTTGCAAATTTGGTGCTACCTGCAAATACCATCACCCAAAATACAGGGCTGGAACATCAGACTGGCAGCAACTGAATGCTCTTGGCTACCCATTGCGCCTGAATGAGAAGGAATGCTCTCACTATGTTAAAACAGGACAGTGCAAGTTTGGTGTCACTTGTAAATATCATCATCCACAGCCAGTTGGACCATCAGTTGCAATTCCTGGACCTTCTTCATATTATCCAACTGGACCTTCTTTCTCAATACCCAGTCCTCAACAATATGCGGGAGGGCTAACAACATGGCCAATTTCAAGGACGCCACTAATGGCCAACCCCTATTTGCAAGGCCCCTCTACTTATGTACCTTTCGTGATTCCCCATGGAATGATGCCAGTTCCTGGCTGGAACTCTTTTCATGGACAAGTGGGTTCTATAACTTCTCGTGATGTGGGGCAACAAGCACCTGGAACTGGTTTATTCTATGGCCCTAGGTACCAAACAGATGGAATGAACCCTAGTATTCAGGGAGCACTGGCTTCATATTCATCTCGATCAGGTTCAATGGGGATTCCATCAACCAATACACAAATGGAGCATATGTTTCCAGAGAGACATGGTCAACCAGAATGTCAATTTTACATGAGAACAGGGTACTGTAAATATGGTTCAACATGTAAATATCATCATCCAAGGGACAGGACTGTTCCATTGACAAGCTGTACTCTCAGCCCTCTCGGCTTACCACTGCGTTCGGGGGCCCAAACATGTTCTTTCTATGTTCGTCAAGGATTTTGCAAATATGGACCAACTTGCAAATATGACCACCCTATGGGGACTTTGAGTTACAGTCCATCTGCATCTTCACTAGTGGATATGCCAGTTGCTCCTTATCCAGTAGGATCGTCACCAGCTACTCTTGCTCCATCATTTTCATCTACAGAATTAAGGACAGAAACTACTGCAGGGCCGTTCAAAGAATCAATTCCTACTCCAGAAACCCCTTTGTCATCTTCTGCTGGTGAATCTTTAGATTTAGGAGCACAAGGTCCACTTCTAAGCACCTCAACAGGTTTGACTTCCTCTGAAAGCGAGGAAAATCCTCTGGTTAAGAAGTCAAATCAGGTTTCTGTCCTTGCAAATGGGATTGCAAAGGAGGGGGACATTCCCATTTCAAATTGA___AGGCATCATGTAAGCAGATCCTAATGGTTGTGTCTGGAGTCTTCTGAAAAGTGGTCATTCTGTTCTATATCTTTCATGACTGTCACATCCCCATTGTGCTGAGAAAGCTGATGGAAATTTACTGAGAAAATACATCTGGTTTGGGACTAAGCCTTCTTCCTTTGGTTTCTGTGTGAATTTCTGGAACTCCAAGTTTGAAGCCCGTTTTCCGATTTCACTTCCACGGGTCCAACGCTGTGATCCAGTTCCACGAGGCTTGCCCCAAATTAATGTGATATATTTTTTCTGGTCTTATGCTTAACCGCACTTTATTAATTTCATTCACAATTTTTTGTTGTTGTTAAATTTACCCATGCATTTTTCTTGTCATTGAGTTGACATTGGACAAGCCTTGTTTAGATTCTATTTGATGGTTCTGTAATTTATTCATTGAGCTACCCTGCCCTGATATTTTGATGCACATTACTGGGTTGTGGCTCTTGGGCATGCTGTGACATTGATGAGTTCTTTCTCGAGTTGGAAGCAGAGCTCTACCAGACCTCATGTGCCTTCTTTGATTCCATCTAATTTTTTGAAGCATGCTCCATCCATAGTTCATTAAGAATTGGCAGTGGCTTCCAAGGAATGTATATATCTCATGCAGAAAGCCAGAGAATTATGTTTGGCAATGTTTTATTCTTTTTCTTTGAGGGGAGAGCATGCTTTAGTCTCAACCACTAGGTTTTGGCATTTGTAATACAACCAACGCTGGTCTTTTTGGAACGAGTTATCCTTATGTAGACATGAAATGTGCCAAATTTCTTTATGAGAATAAAAGGAATGATATATTTTTAATTC

Fln Alignment:

Contig7089___MEYYGN-SSAMARYLGSAVDPPPPDWNSQHVAADLGMEEAMRQMNLQSHDVAERGLSGPLPERPGEIDCAHYMRTGICGFGMTCRFNHPPRRNIVAAVGRNRGEYPERPGDPECQHFVKTGTCKFGATCKYHHPKYRAGTSDWQQLNALGYPLRLNEKECSHYVKTGQCKFGVTCKYHHPQPVGPSVAIXXXXXXXXXXXXXXIPSPQQYAGGLTTWPISRTPLMANPYLQGPSTYVPFVIPHGMMPVPGWNSF-HGQVGSITSRDVGQQAPGTGLFYGPRYQTDGMNPSIQGALASYSSRSGSMG-----IPSTNTQMEHMFPERHGQPECQFYMRTGYCKYGSTCKYHHPRDRTVPLTSCTLSPLGLPLRSGAQTCSFYVRQGFCKYGPTCKYDHPMGTLSYSPSASSLVDMPVAPYPVGSSPATLAPSFSSTELRTETTAGPFKESIPTPETPLSSSAGESL
C0PR62______________MEYNAAMQGGFARQRGLVIDPDGWQQHGRPRAEIAVVEEAMWQMSLQQQHENMEAEVGPFPERPGEPDCTYYMRTGLCGFGMSCRFNHPPNRKQAAAAARNKGEYPERLGQPECQYYLKTGSCKFGATCKFHHPRDKAGSTGRAVINVYGYPLRPNEKECAYYMRTGQCKYGATCKFHHPQPVSTLVPV-RGSSLFTPVHSPTTPGPQPYPGSLPTWPMQRAPFIQSPRWQGPSSYAPLILPQGIMPVPSWSTYPPGQVGSISSSDGQQQAMGAGLVYGPSSQTDPMASGIQGTLSHFPPGSPGMGPPTLQLPSSSAQRESMFPERPGQQECQFYMKTGDCKFGMTCRYHHPKERIIPVPNCVLNSLGLPLRPGAPACTFFTRYGICKFGATCKFDHPMGHSSYSQSISSPIDISVGRHQIGSASATLSSVSLSSDLVVDSGGGKSTEHSSTAEARQQPSGVENL

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
276		88		11	0.923564
277		88	11		0.923564
278		88	11		0.923564
279			11	88	0.923564
293	77		22		0.999999
658	85		14		0.993533
685	85		14		0.993533
759		16		83	0.994512
822		16		83	0.994512
870	10		90		0.90298
883	37			62	1.0
900		12		87	0.992554
1374	10	90			0.90298
1377		88	11		0.923564
1378	88			11	0.923564
1414	88		11		0.923564
1512		85	14		0.993533
1513		85	14		0.993533
1514			14	85	0.993533
2447	80		20		0.995493
2463	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
161	173	TCC TCC TCC TCC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain