SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7084

Length: 2061 nt

UniGene Fasta

>sp_v3.0_unigene7084
CATTTCAGTCTCAGCTGTCAGAACATCTGGATGTCTTGCATAGATCAGTTTCGGATTCAGTCTCACAACAGCAACAGCAGCTAAGAAGTATGGAAGAACAATTGCAGCTTTTTGTCTCCACTAAAAAGCAGGTTACAGAAGGACTAACAGAGAGAGTGGAGAAATTGAAGGCAACATACAGTTCTGGCATCAAAGATCTGCATAATCTAGCCCATGCACTTGATGAAACATCCCTGTCAAGTTTTGAGAAGCTCAACTTAACAGTATCTAAACAGTCTTCAGCTCTAGATGATGTTTTGGCCATTGCTGTTTCAGAGGCTGATGCAATGCTCTGTGAAATGCAACATACACTTGCAAAACAGGAAGAGAAAATGACTTCTTATGCCCATCAACAACAAGAGGGACTTCGAAGAACTATGGAGTCCACAAGAGAAATTTCAGAGATTATTGTTGATTTCTTTGAGAGCCTTGACAAGCATGCATCTGCTCTTAGTCAGTTTGTTGAAGAAGCTCGAACGGTCCATGTCACGGATTTAACGGACCTTGAGAAATCCTATGAGGACTGTGCAGCATATGAGGAGAAGCAAACCTTGGAGAAAATATCTGAAGTGTTGGCAACTTCAACAGCTAGAAAAACTGAACTAATGCGAACCGCTGTTCGTAACATGAGTGAAACAGCGGTTAATAAAGCACATGAGTTGCATCAAGGAATGGTAAATATGCAGCATCTTACATCCATTGCCCAGAATCAATGGAAGATGTATTTGCGGCAAGCTGAAGACAAATATGTTGAGGATACAGCCTCAGCAGAAGCAAATCAGCATATTACAGGACAAATTCTCAATGATTGCACCATTAAAACAAGCTCTTTGGGGACGCACTGGAAAAATGTGCAAGTTGGTCTGCAGCAGCTTGAGAAGAGCAATGTTGAAGAAGTGGATAATGTTGTCAAGAGTGCCAAGGAGGCAAATCAAGTTCTTATTGCTGATTTAACACGGGCCACATCGTCAGCTGATACAGAAATTAAGAATGGAATGGGAAGTCTGTTGTCCACAATCAATGATTCATTGAAAATGGACCATGATACTTACCAAGGTATACAACCCACTATTGCCCTCAGCACCGATGCTATAGCTGAGCTGCAAACAAACCATTATAGCACGGTGGTAGACATAACCAAGCAAGCAGATAAATATCTTCATGAGGAATATATGGAAGATCATCCAAACTGCACAACACCAAAGAGGCGACCTATCAGTGTCCCAAGTCTTGAATGCATTCAAAATTTACAAACTCCATGCTTTGAAGAGCTGTTGCAAACATTTTGGGATACAAAATCTGAAAAGCGATCAAAACATGTAAATGGAGAGGTAAAGCAGCTGCTCTATGCATCACCAGTGCGGGATACCAGAAGCCCTCTTACAACCATCAATTGAGCAAATTCCATTGATTAAATTAAATTACTAGTGTTTTAATTAGCATATTCAATCAAATTGCAATTAGAACTTGGGGGCTATGTAAATTATGTACAGTATTTCACTGAAGCAATTTCTAAATTCTGCCAGTTGGATTTTTATAATAACACCCTTGACGGTTGTTTAATATAACACCCATCCTTTATGGAGCAATTGATTGCTTTTCAAGGAATATGGGTGGACTTTTGCTGGTTATATCAATGCCTCGTACTTGAGACAGTTGATACTTACTATTTAAGGGTACAAACGCCGGAAGTAGATTGTGTTATCCAGGTACCCTGCTTCTGGTATCATGTAATTTTGGAGTTTCAATTCTTTGAAAGATGCCGCCCCCAGAGGCTCCCTTAGAGGGGGGGGCCTATTCCCACAGCACTGTTTTTTAATTTATTGTTTCAAAGGTCCAAAGCATTTGGACTTGGTCAGATTCACAAACATTTTTGTTGCATAAACACTCTTCATTATTCCCAAGGCATTTGTGGGAAATGATCTTCTATGCATTAATGGAACAATTGCAGTTCTCTTATAGTCCTTTACATGACGGATTTGTTCATCATTTCATGAAACTTTACAGAATTATACATTAAAC

Ace file of the UniGene sp_v3.0_unigene7084

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] ref\|NP_001190017.1\| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] emb\|CAB82809.1\| kinesin-related protein-like [Arabidopsis t	-	-	0.0	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%

Source	Gene names
Sma3	At3g45850; F16L2_60; GSVIVT00024429001; MtrDRAFT_AC149490g13v2; OsI_18221; OsJ_16908; P0496H07.17; POPTRDRAFT_752212; RCOM_1264020; VITISV_018380;

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Kinesin, motor domain	IPR001752	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P3

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 449 - 353

Fln protein: MEEQLQLFVSTKKQVTEGLTERVEKLKATYSSGIKDLHNLAHALDETSLSSFEKLNLTVSKQSSALDDVLAIAVSEADAMLCEMQHTLAKQEEKMTSYAHQQQEGLRRTMESTREISEIIVDFFESLDKHASALSQFVEEARTVHVTDLTDLEKSYEDCAAYEEKQTLEKISEVLATSTARKTELMRTAVRNMSETAVNKAHELHQGMVNMQHLTSIAQNQWKMYLRQAEDKYVEDTASAEANQHITGQILNDCTIKTSSLGTHWKNVQVGLQQLEKSNVEEVDNVVKSAKEANQVLIADLTRATSSADTEIKNGMGSLLSTINDSLKMDHDTYQGIQPTIALSTDAIAELQTNHYSTVVDITKQADKYLHEEYMEDHPNCTTPKRRPISVPSLECIQNLQTPCFEELLQTFWDTKSEKRSKHVNGEVKQLLYASPVRDTRSPLTTIN*

Protein Length: 450

Fln nts: CATTTCAGTCTCAGCTGTCAGAACATCTGGATGTCTTGCATAGATCAGTTTCGGATTCAGTCTCACAACAGCAACAGCAGCTAAGAAGT_-_ATGGAAGAACAATTGCAGCTTTTTGTCTCCACTAAAAAGCAGGTTACAGAAGGACTAACAGAGAGAGTGGAGAAATTGAAGGCAACATACAGTTCTGGCATCAAAGATCTGCATAATCTAGCCCATGCACTTGATGAAACATCCCTGTCAAGTTTTGAGAAGCTCAACTTAACAGTATCTAAACAGTCTTCAGCTCTAGATGATGTTTTGGCCATTGCTGTTTCAGAGGCTGATGCAATGCTCTGTGAAATGCAACATACACTTGCAAAACAGGAAGAGAAAATGACTTCTTATGCCCATCAACAACAAGAGGGACTTCGAAGAACTATGGAGTCCACAAGAGAAATTTCAGAGATTATTGTTGATTTCTTTGAGAGCCTTGACAAGCATGCATCTGCTCTTAGTCAGTTTGTTGAAGAAGCTCGAACGGTCCATGTCACGGATTTAACGGACCTTGAGAAATCCTATGAGGACTGTGCAGCATATGAGGAGAAGCAAACCTTGGAGAAAATATCTGAAGTGTTGGCAACTTCAACAGCTAGAAAAACTGAACTAATGCGAACCGCTGTTCGTAACATGAGTGAAACAGCGGTTAATAAAGCACATGAGTTGCATCAAGGAATGGTAAATATGCAGCATCTTACATCCATTGCCCAGAATCAATGGAAGATGTATTTGCGGCAAGCTGAAGACAAATATGTTGAGGATACAGCCTCAGCAGAAGCAAATCAGCATATTACAGGACAAATTCTCAATGATTGCACCATTAAAACAAGCTCTTTGGGGACGCACTGGAAAAATGTGCAAGTTGGTCTGCAGCAGCTTGAGAAGAGCAATGTTGAAGAAGTGGATAATGTTGTCAAGAGTGCCAAGGAGGCAAATCAAGTTCTTATTGCTGATTTAACACGGGCCACATCGTCAGCTGATACAGAAATTAAGAATGGAATGGGAAGTCTGTTGTCCACAATCAATGATTCATTGAAAATGGACCATGATACTTACCAAGGTATACAACCCACTATTGCCCTCAGCACCGATGCTATAGCTGAGCTGCAAACAAACCATTATAGCACGGTGGTAGACATAACCAAGCAAGCAGATAAATATCTTCATGAGGAATATATGGAAGATCATCCAAACTGCACAACACCAAAGAGGCGACCTATCAGTGTCCCAAGTCTTGAATGCATTCAAAATTTACAAACTCCATGCTTTGAAGAGCTGTTGCAAACATTTTGGGATACAAAATCTGAAAAGCGATCAAAACATGTAAATGGAGAGGTAAAGCAGCTGCTCTATGCATCACCAGTGCGGGATACCAGAAGCCCTCTTACAACCATCAATTGAGCAAATTCCATTGATTAAATTAAATTACTAGTGTTTTAATTAGCATATTCAATCAAATTGCAATTAGAACTTGGGGGCTATGTAAATTATGTACAGTATTTCACTGAAGCAATTTCTAAATTCTGCCAGTTGGATTTTTATAATAACACCCTTGACGGTTGTTTAATATAACACCCATCCTTTATGGAGCAATTGATTGCTTTTCAAGGAATATGGGTGGACTTTTGCTGGTTATATCAATGCCTCGTACTTGAGACAGTTGATACTTACTATTTAAGGGTACAAACGCCGGAAGTAGATTGTGTTATCCAGGTACCCTGCTTCTGGTATCATGTAATTTTGGAGTTTCAATTCTTTGAAAGATGCCGCCCCCAGAGGCTCCCTTAGAGGGGGGGGCCTATTCCCACAGCACTGTTTTTTAATTTATTGTTTCAAAGGTCCAAAGCATTTGGACTTGGTCAGATTCACAAACATTTTTGTTGCATAAACACTCTTCATTATTCCCAAGGCATTTGTGGGAAATGATCTTCTATGCATTAATGGAACAATTGCAGTTCTCTTATAGTCCTTTACATGACGGATTTGTTCATCATTTCATGAAACTTTACAGAATTATACATTAAAC

Fln Alignment:

Contig7084___QEGLRRTMESTREISEIIVDFFESLDKHASALSQFVEEARTVHVTDLTDLEKSYEDCAAYEEKQTLEKISEVLATSTARKTELMRTAVRNMSETAVNKAHELHQGMVNMQHLTSIAQNQWKMYLRQAEDKYVEDTASAEANQHITGQILNDCTIKTSSLGTHWKNVQVGLQQLEKSNVEEVDNVVKSAKEANQVLIADLTRATSSADTEIKNGMGSLLSTINDSLKMDHDTYQGIQPTIALSTDAIAELQTNHYSTVVDITKQADKYLHEEYMEDHPNCTTPKRRPISVPSLECIQNLQTPCFEELLQTFWDTKS---EKRSKHVNG---EVKQLLYASPVRDTRSPLTTIN
D5A9P3______________RERARTSIELMTSISGATMGFFENLADQASKFQQHIEHSHEVREQSIIDFQKAYEAQSRQEEQQLINDISNLVANAMVRKADMVNTRLSSLREKVIEDRESMQQGILSIDAATSDAKRKWETFAKQADNDANESAALSAAKHCRMELLLQQCVNITSNASQHWKTTKKTGEDHSRKYVTVMESLVRDGVEANDKHDAEIDDSRVSAEVDIEKNNESILLHVDSSVEHEHKVASEILSTIEAHSHTLEKLQNDHLKRVTHIEEQAEHCFCNEYMEDQPTSTTPSRQSIEIPSRDLIENMRAPPFEALVEEFRENNPHDVDLKIYHENGISKESKPRQDSLIPRDSRSPLTQVN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1536		11		88	0.923564
1571	85		14		0.993533
1644	90		10		0.90298
1885		12		87	0.992554
1957	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain