SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7070

Length: 2254 nt

UniGene Fasta

>sp_v3.0_unigene7070
ATGGGGTAAAACCAAAACCCCAACTATTGCAGAAAATTAATAGAGGACTAGGCAGATATGGCTAGCTCCATGGGAGCTCCTAGATGTGCCGCTGTACTGTTTTCCTCTCACAGTGTACAAAATTTGTACACTCCACACTCCAATTATATAATTTCCCCTTGGTCCGGCCTAAGGGCGCTCTGCAAAATCAGTTGCAGAAACCCTAAACTCTACCAAGAGAGAAATATAAATGTTCTTCGGCAATGGCACAGTTTGAGCACGAGAGCAGAGGTTGACAATGGGGCTGTACTGTTGGGAAAGAGTGAGGAATTCGATTATGACCTGTTCACAATCGGAGCTGGGAGCGGCGGAGTCAGAGCCTCCAGGTTCGCTGCTAATTTTGGTGCCAGGGTTGCAATTTGCGAGATGCCTTTCGCCACTATTTCCTCTGATAATGCTGGGGGCGTCGGTGGCACGTGTGTACTTCGTGGTTGTGTCCCCAAAAAGTTACTTGTTTATGCATCCAAGTTTTCTCATGAATTTGAAGAGAGTGGAGGGTTTGGCTGGTCTTATGAATGTGAGCCCAAGCATGACTGGGCCACTCTGATATCTAATAAAAATGCAGAGATAAGACGGTTGACTGGAGTGTACAAAAATGTTTTGAACAATGCTGGTGTAACTCTAATAGAAGGTCGCGGAAAGATTGTTGATCCACATACAGTGGAAGTGGATGGGAAATTGTACTCTGCAAAGCATATACTTGTTTCTGTTGGTGGACGCCCATCTATTCCTAACATTCCTGGAAAAGAATTTGCAATCAATTCTGACAGTGCTCTAGATTTACCTTCACGACCAGACAAAATGGCTATAATTGGAGGTGGTTACATTGCTCTGGAATTTGCAAGTATCTTCAATGGATTAAACAGTGATGTTCATGTATTCATCCGCCAGAAAAAGGTTTTAAGAGGCTTCGATGAGGAAGTTAGAGATTTTGTAGCAGAACAAATGGCCTTGAGAGGGATCGAATTTCATGTTGAAGAGGCCCCAGAAGCTATAGAAAAAGCACCAGATGGATCACTTACATTGAGGACTACCAAAGGAGTCAATGCTGGTTTTTCTCATGTCATGTTTGCTACTGGTCGAGTACCAAACACTAAGAATTTGGGTTTAGAGGAGATTGGAGTAAAAATGGACAAGAATGGTGCCATTGAGGTAGATGATTACTCAAGGGCATCTGTTGAATCAATCTGGGCTGTTGGGGATGTCACTAACAGGGTAAATTTGACTCCAGTTGCTATAATGGAAGGAGGGGCATTTGCTAAAACTGTGTTTGCCAACCAACCTACAAAACCTAACTACAGAAATATACCATCTGCAGTGTTCACTCAACCTCCAATTGGAACAGTTGGTCTCAGCGAACAACAGGCAATCGATCAATATAAAGACATTGATGTTTACACAGCTAGCTTTCGACCCATGAAAGCAACATTATCTGGCCTTCCTGATCGAATTTTTATGAAAATAATTGTGTGCGCAAGAACAAGCAAGGTTGTAGGAGTTCACATGTGTGGGGATGACACACCTGAGATTTTACAGGGAGTTGCAATCGCTGTGAAAGCTGGCTTAACAAAAGCAGATTTTGATGCAACGGTTGGAATTCATCCCACAGCAGCAGAAGAGTTGGTAACCATGAGAACTCCTACCCGAAGAATTCGTCAAAGTGATGCTCATGCTGAGGTAGAAGGAATGTCTACGGCTTCAACACCTGGAAGCAGCTGAGGGTGGTTTGGAACTGCTAAGATGACGATAATTATTCCCGCATGCAAATTCTCTATGTTATCTACAAGATGGATTTTGTTAGTCTTGTTTCATTAGACCGTATCGATAGATCCATCTTTTGGCACTTTACCTATCAATCTGAAGCATTTTAGAAGTCAGGGTGCAAATAACCATCTGTTCCATTATTGTCATGTATTAGGTCTTCCAATCTGATAATTTCAAAAGTTGTCAAAAGTTGTCTCTTCATATTTGATAGTCTTTTTTGATTTTATTTATGTAATTAATCCGGAATTTTTTAGGCGGGATATTGTATTATTTGAGAGGATGAATACCATGCTTCATGGAGATATATTCCACATTTTTCTGTTTATGTTTGGAGGTCACATTTTCCTAAGTAGTACTTTCCCAGGAATCATTCACCATGGTGTTGCATGATGCATCTAACCCGAGCTAGCGTAATGTTTCTCAAACAATAATAGGTGAATAATCGTTAAAC

Ace file of the UniGene sp_v3.0_unigene7070

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione reductase (NADPH) (Fragment) n=3 Tax=Vitis vinifera RepID=O22511_VITVI	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Sma3	Glutathione reductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferred entry: 1.8.1.7.	EC:1.6.4.2	-	7.989e-30	-
Sma3	Glutathione-disulfide reductase.	EC:1.8.1.7	-	3.42477e-42	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		3.42477e-42	%

Source	Gene names
Sma3	At3g24170; At3g54660; BO-GR; CHLREDRAFT_134165; CHLREDRAFT_191427; DMAS1; DMAS2; EMB2360; GOR; GOR1; GR; GR-5; GR1; GR2; GRC2; GSHR1; GSHR2; GSR1; GSVIVT00020491001; GSVIVT00023848001; Gr; Gsr_2; HvGR1; HvGR2; LOC_Os02g56850; LOC_Os03g06740; LOC_Os10g2800

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	glutathione-disulfide reductase activity	GO:0004362	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	NADP binding	GO:0050661	Molecular Function	-
Sma3	glutathione metabolic process	GO:0006749	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Mercuric reductase	IPR000815	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, dimerisation	IPR004099	-	-
Sma3	Glutathione reductase, eukaryote/bacterial	IPR006322	-	-
Sma3	Glutathione-disulphide reductase	IPR006324	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class I, active site	IPR012999	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G54660.1	GR, EMB2360, ATGR2 glutathione reductase chr3:20230356-20233100 REVERSE LENGTH=565	73%
RefSeq	Arabidopsis thaliana	NP_191026.1	glutathione reductase [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002321515.1	glutathione reductase [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRK1

Fln msg: your sequence is longer than subject: 567 - 492

Fln protein: MASSMGAPRCAAVLFSSHSVQNLYTPHSNYIISPWSGLRALCKISCRNPKLYQERNINVLRQWHSLSTRAEVDNGAVLLGKSEEFDYDLFTIGAGSGGVRASRFAANFGARVAICEMPFATISSDNAGGVGGTCVLRGCVPKKLLVYASKFSHEFEESGGFGWSYECEPKHDWATLISNKNAEIRRLTGVYKNVLNNAGVTLIEGRGKIVDPHTVEVDGKLYSAKHILVSVGGRPSIPNIPGKEFAINSDSALDLPSRPDKMAIIGGGYIALEFASIFNGLNSDVHVFIRQKKVLRGFDEEVRDFVAEQMALRGIEFHVEEAPEAIEKAPDGSLTLRTTKGVNAGFSHVMFATGRVPNTKNLGLEEIGVKMDKNGAIEVDDYSRASVESIWAVGDVTNRVNLTPVAIMEGGAFAKTVFANQPTKPNYRNIPSAVFTQPPIGTVGLSEQQAIDQYKDIDVYTASFRPMKATLSGLPDRIFMKIIVCARTSKVVGVHMCGDDTPEILQGVAIAVKAGLTKADFDATVGIHPTAAEELVTMRTPTRRIRQSDAHAEVEGMSTASTPGSS*

Protein Length: 568

Fln nts: ATGGGGTAAAACCAAAACCCCAACTATTGCAGAAAATTAATAGAGGACTAGGCAGAT_-_ATGGCTAGCTCCATGGGAGCTCCTAGATGTGCCGCTGTACTGTTTTCCTCTCACAGTGTACAAAATTTGTACACTCCACACTCCAATTATATAATTTCCCCTTGGTCCGGCCTAAGGGCGCTCTGCAAAATCAGTTGCAGAAACCCTAAACTCTACCAAGAGAGAAATATAAATGTTCTTCGGCAATGGCACAGTTTGAGCACGAGAGCAGAGGTTGACAATGGGGCTGTACTGTTGGGAAAGAGTGAGGAATTCGATTATGACCTGTTCACAATCGGAGCTGGGAGCGGCGGAGTCAGAGCCTCCAGGTTCGCTGCTAATTTTGGTGCCAGGGTTGCAATTTGCGAGATGCCTTTCGCCACTATTTCCTCTGATAATGCTGGGGGCGTCGGTGGCACGTGTGTACTTCGTGGTTGTGTCCCCAAAAAGTTACTTGTTTATGCATCCAAGTTTTCTCATGAATTTGAAGAGAGTGGAGGGTTTGGCTGGTCTTATGAATGTGAGCCCAAGCATGACTGGGCCACTCTGATATCTAATAAAAATGCAGAGATAAGACGGTTGACTGGAGTGTACAAAAATGTTTTGAACAATGCTGGTGTAACTCTAATAGAAGGTCGCGGAAAGATTGTTGATCCACATACAGTGGAAGTGGATGGGAAATTGTACTCTGCAAAGCATATACTTGTTTCTGTTGGTGGACGCCCATCTATTCCTAACATTCCTGGAAAAGAATTTGCAATCAATTCTGACAGTGCTCTAGATTTACCTTCACGACCAGACAAAATGGCTATAATTGGAGGTGGTTACATTGCTCTGGAATTTGCAAGTATCTTCAATGGATTAAACAGTGATGTTCATGTATTCATCCGCCAGAAAAAGGTTTTAAGAGGCTTCGATGAGGAAGTTAGAGATTTTGTAGCAGAACAAATGGCCTTGAGAGGGATCGAATTTCATGTTGAAGAGGCCCCAGAAGCTATAGAAAAAGCACCAGATGGATCACTTACATTGAGGACTACCAAAGGAGTCAATGCTGGTTTTTCTCATGTCATGTTTGCTACTGGTCGAGTACCAAACACTAAGAATTTGGGTTTAGAGGAGATTGGAGTAAAAATGGACAAGAATGGTGCCATTGAGGTAGATGATTACTCAAGGGCATCTGTTGAATCAATCTGGGCTGTTGGGGATGTCACTAACAGGGTAAATTTGACTCCAGTTGCTATAATGGAAGGAGGGGCATTTGCTAAAACTGTGTTTGCCAACCAACCTACAAAACCTAACTACAGAAATATACCATCTGCAGTGTTCACTCAACCTCCAATTGGAACAGTTGGTCTCAGCGAACAACAGGCAATCGATCAATATAAAGACATTGATGTTTACACAGCTAGCTTTCGACCCATGAAAGCAACATTATCTGGCCTTCCTGATCGAATTTTTATGAAAATAATTGTGTGCGCAAGAACAAGCAAGGTTGTAGGAGTTCACATGTGTGGGGATGACACACCTGAGATTTTACAGGGAGTTGCAATCGCTGTGAAAGCTGGCTTAACAAAAGCAGATTTTGATGCAACGGTTGGAATTCATCCCACAGCAGCAGAAGAGTTGGTAACCATGAGAACTCCTACCCGAAGAATTCGTCAAAGTGATGCTCATGCTGAGGTAGAAGGAATGTCTACGGCTTCAACACCTGGAAGCAGCTGA___GGGTGGTTTGGAACTGCTAAGATGACGATAATTATTCCCGCATGCAAATTCTCTATGTTATCTACAAGATGGATTTTGTTAGTCTTGTTTCATTAGACCGTATCGATAGATCCATCTTTTGGCACTTTACCTATCAATCTGAAGCATTTTAGAAGTCAGGGTGCAAATAACCATCTGTTCCATTATTGTCATGTATTAGGTCTTCCAATCTGATAATTTCAAAAGTTGTCAAAAGTTGTCTCTTCATATTTGATAGTCTTTTTTGATTTTATTTATGTAATTAATCCGGAATTTTTTAGGCGGGATATTGTATTATTTGAGAGGATGAATACCATGCTTCATGGAGATATATTCCACATTTTTCTGTTTATGTTTGGAGGTCACATTTTCCTAAGTAGTACTTTCCCAGGAATCATTCACCATGGTGTTGCATGATGCATCTAACCCGAGCTAGCGTAATGTTTCTCAAACAATAATAGGTGAATAATCGTTAAAC

Fln Alignment:

Contig7070___EFDYDLFTIGAGSGGVRASRFAANFGARVAICEMPFATISSDNAGGVGGTCVLRGCVPKKLLVYASKFSHEFEESGGFGWSYECEPKHDWATLISNKNAEIRRLTGVYKNVLNNAGVTLIEGRGKIVDPHTVEV---DG--KLYSAKHILVSVGGRPSIPNIPGKEFAINSDSALDLPSRPDKMAIIGGGYIALEFASIFNGLNSDVHVFIRQKKVLRGFDEEVRDFVAEQMALRGIEFHVEEAPEAIEKAPDGSLTLRTTKGVNAGFSHVMFATGRVPNTKNLGLEEIGVKMDKNGAIEVDDYSRASVESIWAVGDVTNRVNLTPVAIMEGGAFAKTVFANQPTKPNYRNIPSAVFTQPPIGTVGLSEQQAIDQ-YKDIDVYTASFRPMKATLSGLPDRIFMKIIVCARTSKVVGVHMCGDDTPEILQGVAIAVKAGLTKADFDATVGIHPTAAEELVTMRTPTRRI
B8LRK1______________QYDFDLFVIGAGSGGVRSARTAAGLGAKVAICELPFHPISSETIGGVGGTCVIRGCVPKKILVYGASFSSEFEDARNFGWDINGPITFDWKKLLENKTNEITRLNGVYKRMLANSGVTQLEGEAKFVEQHKVEVTQIDGTPKYYTAKHILIATGSRATRLNVPGKELAITSDEALSLEELPKRAVIYGGGYIAVEFSTIWNGMGAKVDLFYRSKLPLRGFDDEMQAVVAKNLENRGINLHPNTNLSKLVKTEEG-IKVYTDRGDELTADVVLFAVGRKPNTKRLNLDAVGVEYDPLGAVKVDEYSQSTVPNIWAVGDVTNRKNLTPVALMEGTCFAKTVFGGQPTKPDYNHVPCAVFCLPPLSVVGLTEKEAIEKAHGDIGVFTSTFTPMKNTISRRPEKTVMKLIVDCETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMRTITRRI

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1287	14		71		0.984337
1289			85	14	0.993533
1290			85	14	0.993533
1533			20	80	0.995493
2037			75	25	0.996473
2075		20		80	0.995493
2078	80			20	0.995493
2177		33	66		0.997452
2187	33		66		0.997452
2191		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain