SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7061

Length: 2842 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene7061
ATGGGGGAAAACAGTAAAGGTCGCGGAAGAGCTACTGCTAGAAAGTTGTGAGTAGCCATTTGAATGCTGTATATGTGAAGCAAAGTCCATTGCTTGCAGTCTTAACTGAGCAACAAATTTGATCCTTCTTTGTTCAACAGAGGATGAAGTCGTTATGGTGGTTGGTGAATATGGTTATGATGATGGTAGCAGGAGCGATAGCAGGGGAGCCTCCATTTGCGTGCGATAGCAGAAATCCGGCGACACGATCTTACGCGTTCTGTGATTCTTCAAAACCCATAACAGTGCGCGTGGAAGATCTAATATCGCGGCTGAGCCTGGTGGAGAAAGTTGAACAGCTAACGAATAACGCATCGGCCGTACAACGCCTGGGAATACCCAAATACGAATGGTGGTCGGAAGCTCTGCACGGAGTTTCCCAGTGGGGTCGCGGCATTCACTTTAATGGTCCCATTCATACAGCTACCAGTTTTCCTCAAGTCATACTAACGGCTGCGTCCTTTGATGTCAAACTCTGGTATCACATTGCCCAGGCAATTGGCATTGAAGCGAGAGCGATATACAATGCAGGGCAGGCGTCAGGGCTTACATTCTGGACGCCCAATATCAATATATTCAGAGATCCTCGATGGGGCCGGGGTCAAGAAACCCCGGGAGAAGATCCCCTGCTATCTAGCAGGTACTCTGTTGCCTACGTTAGGGGATTACAGGGCGATCCCCTTTCTTCCTCTTCTAAGACAAATGTCCGCTCTTCTACTCATTTGAGAGCTTCTGCTTGCTGCAAGCATTTCACAGCTTACGACATGGATAACTGGGAGGGCCATACTCGCTTCTCTTTCGATGCTATGGTGACCAAACAAGACTTGTTGGATACATATCAACCGCCGTTCAAGAGCTGTGTGGAGCAAGGGCGTGCCAGTGGTATCATGTGCTCTTACAACAGTGTTAATGGAGTCCCAACGTGTGGTGATTTCAACCTTCTCACCAGCACTGCGAGACGTGACTGGGGATTTCAAGGTTACATCACAGCAGACTGTGACGCTGTTGCCACTATTTACACTTCTCATCGGTATACATCGACTGCAGAAGATGCTGTAGCGGACGTTCTGAAAGCAGGAATGGATGTCGACTGTGGAAATTATTTGGGAAAATACACAATGTCAGCAATAGCGAAAGGAAAAGTGAATGAATCAGGTATCGACAGAGCCCTTCACAATTTGTTCTCTGTGCGCATGCGTCTTGGGCTTTTTGATGGTGATCTCAACCATCAACTGGAGGGAAAACTTCAAATGCGGGTTGTGTGCTCTGCTGAACATCAAAGATTGGCATTGCAAGCTGCAAGGCAGGGTATTGTGCTTCTCAAGAACAGCAGAAAACATCTGCCCTTGTCGAAAACACGGACCAAGTCATTGGCTGTCATTGGGCCTAATGCCAACAATGCAACTACTCTCCTAGGAAACTACTATGGTTTTCCATGTCACACCATAACACCGCTTCAAGGCCTGCAGAGATATGTTAGGGACACTCTGTATTACTCCGGGTGTGAGAACCTGGCATGCATTTCTAACAATTTGTTCGGGGAAGCTGTAGAGATTGCAAAGAAAGTGGATGAAGTGGTTGTAGTCGTTGGCTTAGACCAAACCCAAGAAAAGGAGGAACGAGACCGAATAAAATTGACTCTACCAGGCCAACAAGAGAAATTAGTGTATCAAGTTTCCCGTGCTGCCAAAAGACCTGTGGTGCTTGTCATCCTCTCTGGCGGGCCAGTGGATGTGTCGTTTGCAGTAAATGATCCTCAAATATCTAGCATTATTTGGGCAGGCTACCCTGGTCAGGCTGGTGGTCAGGCACTTGCAGAGATTATTTTTGGTGACTACAATCCAGGTGGGAGATTACCTGTGACATGGTACCCTCAAGACTTCGTAAAGATACCAATGACGGACATGAACATGCGTCCAAATCATCATACAGGCTATCCGGGTCGTACATACAGATTTTACACAGGGAGGAAAGTGTTTGACTTTGGTCAGGGACTCAGTTACTCAGCGTACTCGTATGAGTTCTCTTCCACAAACATCAAGAAGATTGATCTGAATGTGACAATGGAGCATGTTGAAGCCCTTGGTGACACAGGAAAAGCTCATGTCAGAGTGGAGAACAGCCCTTGCAGGAAGTTAAAATTCAGATGCTCCATACTTGTGCGGAACCATGATAACATGGATGGGACGCATGCAGTGTTGTTGTATTCCAAGTCCCCTGCAACCCACAAAGGAGCCCCACAAAAGCAGCTAATTGGATTTCGCAGTGTTCATGTCCCGGGTAAACAGACAACCAAAATTACGTTTGTGGTTAAGCCTTGTGATCACTTCAGTACTGTTGAAGAGAATGGGCAAAGACTTTTGGCTATTGGTTCCCATTCCCTAATAGTTGGTGATACCCAGTATTCAGTTTCACTTGTTACCAAACACTTGAACAGAAATCCATAGTACTTAGTACCACCTATAATGATAATCCGATTGGCTTCAGGACAATACTCGCATTGTCTTTGATCTCTGGGAAGTAAAATGGCCTCATGACAATATTCGCATTGTCATCTGGGAAGTAGAATAACAGTGGCGTTTATGGTTTTAACGACTCCATCTGCTGCCATTGTTGTGATTCCTAAATTGTTATTTGATTGCATGCTTTGTATTTCCATTTCTGTCATTGTGAACCCAAGTTATTATTCGATTAAGCTTTCTATTTCTATTTCTCCTCTGTATTGAGGAAAATGTGACATGGAAGGAGGAAAAATGTGACAAGAAGTTCAAATACATGTCATTATATAGGTGAGGTTATATTT

Ace file of the UniGene sp_v3.0_unigene7061 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Periplasmic beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9RJH3_RICCO	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Beta-glucosidase, putative	-	-	4.398e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	2.223e-21	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Cyanoamino acid metabolism	00460		2.223e-21	%
Sma3	Starch and sucrose metabolism	00500		2.223e-21	%
Sma3	Phenylpropanoid biosynthesis	00940		2.223e-21	%
Sma3	Biosynthesis of secondary metabolites	01110		2.223e-21	%
Sma3	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	9.976e-15	-

Source	KEGGs	Term	e value	Identity
Sma3	Starch and sucrose metabolism	00500	9.976e-15	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520	9.976e-15	%
Sma3	Metabolic pathways	01100	9.976e-15	%

Source	Gene names
Sma3	ARF; At1g02640; At1g78060; At5g09700; At5g09730; At5g10560; At5g10560/F12B17_90; At5g49360; At5g64570; B0414F07.1; B1011H02.4; BXL2; BXL3; BXL4; BXL7; F12B17_90; F17I14_110; F17I14_80; GSVIVT00001462001; GSVIVT00003420001; GSVIVT00008402001; GSVIVT0000853

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	-
Sma3	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	xylan catabolic process	GO:0045493	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G78060.1	Glycosyl hydrolase family protein chr1:29349796-29352868 REVERSE LENGTH=767	55%
RefSeq	Arabidopsis thaliana	NP_177929.1	putative beta-D-xylosidase 7 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002302285.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: your sequence is longer than subject: 781 - 304

Fln protein: MKSLWWLVNMVMMMVAGAIAGEPPFACDSRNPATRSYAFCDSSKPITVRVEDLISRLSLVEKVEQLTNNASAVQRLGIPKYEWWSEALHGVSQWGRGIHFNGPIHTATSFPQVILTAASFDVKLWYHIAQAIGIEARAIYNAGQASGLTFWTPNINIFRDPRWGRGQETPGEDPLLSSRYSVAYVRGLQGDPLSSSSKTNVRSSTHLRASACCKHFTAYDMDNWEGHTRFSFDAMVTKQDLLDTYQPPFKSCVEQGRASGIMCSYNSVNGVPTCGDFNLLTSTARRDWGFQGYITADCDAVATIYTSHRYTSTAEDAVADVLKAGMDVDCGNYLGKYTMSAIAKGKVNESGIDRALHNLFSVRMRLGLFDGDLNHQLEGKLQMRVVCSAEHQRLALQAARQGIVLLKNSRKHLPLSKTRTKSLAVIGPNANNATTLLGNYYGFPCHTITPLQGLQRYVRDTLYYSGCENLACISNNLFGEAVEIAKKVDEVVVVVGLDQTQEKEERDRIKLTLPGQQEKLVYQVSRAAKRPVVLVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPVTWYPQDFVKIPMTDMNMRPNHHTGYPGRTYRFYTGRKVFDFGQGLSYSAYSYEFSSTNIKKIDLNVTMEHVEALGDTGKAHVRVENSPCRKLKFRCSILVRNHDNMDGTHAVLLYSKSPATHKGAPQKQLIGFRSVHVPGKQTTKITFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYSVSLVTKHLNRNP*

Protein Length: 782

Fln nts: ATGGGGGAAAACAGTAAAGGTCGCGGAAGAGCTACTGCTAGAAAGTTGTGAGTAGCCATTTGAATGCTGTATATGTGAAGCAAAGTCCATTGCTTGCAGTCTTAACTGAGCAACAAATTTGATCCTTCTTTGTTCAACAGAGG_-_ATGAAGTCGTTATGGTGGTTGGTGAATATGGTTATGATGATGGTAGCAGGAGCGATAGCAGGGGAGCCTCCATTTGCGTGCGATAGCAGAAATCCGGCGACACGATCTTACGCGTTCTGTGATTCTTCAAAACCCATAACAGTGCGCGTGGAAGATCTAATATCGCGGCTGAGCCTGGTGGAGAAAGTTGAACAGCTAACGAATAACGCATCGGCCGTACAACGCCTGGGAATACCCAAATACGAATGGTGGTCGGAAGCTCTGCACGGAGTTTCCCAGTGGGGTCGCGGCATTCACTTTAATGGTCCCATTCATACAGCTACCAGTTTTCCTCAAGTCATACTAACGGCTGCGTCCTTTGATGTCAAACTCTGGTATCACATTGCCCAGGCAATTGGCATTGAAGCGAGAGCGATATACAATGCAGGGCAGGCGTCAGGGCTTACATTCTGGACGCCCAATATCAATATATTCAGAGATCCTCGATGGGGCCGGGGTCAAGAAACCCCGGGAGAAGATCCCCTGCTATCTAGCAGGTACTCTGTTGCCTACGTTAGGGGATTACAGGGCGATCCCCTTTCTTCCTCTTCTAAGACAAATGTCCGCTCTTCTACTCATTTGAGAGCTTCTGCTTGCTGCAAGCATTTCACAGCTTACGACATGGATAACTGGGAGGGCCATACTCGCTTCTCTTTCGATGCTATGGTGACCAAACAAGACTTGTTGGATACATATCAACCGCCGTTCAAGAGCTGTGTGGAGCAAGGGCGTGCCAGTGGTATCATGTGCTCTTACAACAGTGTTAATGGAGTCCCAACGTGTGGTGATTTCAACCTTCTCACCAGCACTGCGAGACGTGACTGGGGATTTCAAGGTTACATCACAGCAGACTGTGACGCTGTTGCCACTATTTACACTTCTCATCGGTATACATCGACTGCAGAAGATGCTGTAGCGGACGTTCTGAAAGCAGGAATGGATGTCGACTGTGGAAATTATTTGGGAAAATACACAATGTCAGCAATAGCGAAAGGAAAAGTGAATGAATCAGGTATCGACAGAGCCCTTCACAATTTGTTCTCTGTGCGCATGCGTCTTGGGCTTTTTGATGGTGATCTCAACCATCAACTGGAGGGAAAACTTCAAATGCGGGTTGTGTGCTCTGCTGAACATCAAAGATTGGCATTGCAAGCTGCAAGGCAGGGTATTGTGCTTCTCAAGAACAGCAGAAAACATCTGCCCTTGTCGAAAACACGGACCAAGTCATTGGCTGTCATTGGGCCTAATGCCAACAATGCAACTACTCTCCTAGGAAACTACTATGGTTTTCCATGTCACACCATAACACCGCTTCAAGGCCTGCAGAGATATGTTAGGGACACTCTGTATTACTCCGGGTGTGAGAACCTGGCATGCATTTCTAACAATTTGTTCGGGGAAGCTGTAGAGATTGCAAAGAAAGTGGATGAAGTGGTTGTAGTCGTTGGCTTAGACCAAACCCAAGAAAAGGAGGAACGAGACCGAATAAAATTGACTCTACCAGGCCAACAAGAGAAATTAGTGTATCAAGTTTCCCGTGCTGCCAAAAGACCTGTGGTGCTTGTCATCCTCTCTGGCGGGCCAGTGGATGTGTCGTTTGCAGTAAATGATCCTCAAATATCTAGCATTATTTGGGCAGGCTACCCTGGTCAGGCTGGTGGTCAGGCACTTGCAGAGATTATTTTTGGTGACTACAATCCAGGTGGGAGATTACCTGTGACATGGTACCCTCAAGACTTCGTAAAGATACCAATGACGGACATGAACATGCGTCCAAATCATCATACAGGCTATCCGGGTCGTACATACAGATTTTACACAGGGAGGAAAGTGTTTGACTTTGGTCAGGGACTCAGTTACTCAGCGTACTCGTATGAGTTCTCTTCCACAAACATCAAGAAGATTGATCTGAATGTGACAATGGAGCATGTTGAAGCCCTTGGTGACACAGGAAAAGCTCATGTCAGAGTGGAGAACAGCCCTTGCAGGAAGTTAAAATTCAGATGCTCCATACTTGTGCGGAACCATGATAACATGGATGGGACGCATGCAGTGTTGTTGTATTCCAAGTCCCCTGCAACCCACAAAGGAGCCCCACAAAAGCAGCTAATTGGATTTCGCAGTGTTCATGTCCCGGGTAAACAGACAACCAAAATTACGTTTGTGGTTAAGCCTTGTGATCACTTCAGTACTGTTGAAGAGAATGGGCAAAGACTTTTGGCTATTGGTTCCCATTCCCTAATAGTTGGTGATACCCAGTATTCAGTTTCACTTGTTACCAAACACTTGAACAGAAATCCATAG___TACTTAGTACCACCTATAATGATAATCCGATTGGCTTCAGGACAATACTCGCATTGTCTTTGATCTCTGGGAAGTAAAATGGCCTCATGACAATATTCGCATTGTCATCTGGGAAGTAGAATAACAGTGGCGTTTATGGTTTTAACGACTCCATCTGCTGCCATTGTTGTGATTCCTAAATTGTTATTTGATTGCATGCTTTGTATTTCCATTTCTGTCATTGTGAACCCAAGTTATTATTCGATTAAGCTTTCTATTTCTATTTCTCCTCTGTATTGAGGAAAATGTGACATGGAAGGAGGAAAAATGTGACAAGAAGTTCAAATACATGTCATTATATAGGTGAGGTTATATTT

Fln Alignment:

Contig7061___GLDQTQEKEERDRIKLTLPGQQEKLVYQVSRAAKRPVVLVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPVTWYPQDFVKIPMTDMNMRPNHHTGYPGRTYRFYTGRKVFDFGQGLSYSAYSYEFSSTNIKKIDLNVTMEHVEALGDTGKAHVRVENSPCRKLKFRCSILVRNHDNMDGTHAVLLYSKSPATHKGAPQKQLIGFRSVHVPGKQTTKITFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYSVSLVTKHLNRN
D5ABI5______________GLDQTQEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAEIIFGDYNPGGRLPMTWYPQDFVKIPMTDMNMRPNHDTGYPGRTYRFYTGKKVFEFGQGLSYSAYSYNFSSTTIQKIDLNVTMEHFEALGNRGKGHVRVENTPCRKLKFRSSIFVRNHDKMDGRHAVLLYSKSPATHKGAPQKQLIGFRSVHVQGKHTAKVTFVVKPCDHFSTVEENGQRLLAIGSHSLIVGDTQYPVSLVTKHLNRN

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1295		12		87	0.992554
1331	87			12	0.992554
1452	16	83			0.994512
1475		16		83	0.994512
1557	80		20		0.995493
1640		33		66	0.997452
1650		33		66	0.997452
1651		33	66		0.997452
1766	80		20		0.995493
1884		16		83	0.999991
2044			12	87	0.992554
2154	20	80			0.995493
2387		14		85	0.993533
2458		16	83		0.994512
2524	28	71			1.0
2605		75		25	1.0
2641		14		85	0.993533
2642	14		85		0.993533
2643		85		14	0.993533
2687		72	9		0.999994
2707	40			60	1.0
2744	85	14			0.993533
2746		14		85	0.993533
2797	66	33			0.997452
2798	66	33			0.997452
2800		33		66	0.997452
2801	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain