SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7026

Length: 1274 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene7026 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=ABC transporter C family member 9; Short=ABC transporter ABCC.9; Short=AtABCC9; AltName: Full=ATP-energized glutathione S-conjugate pump 9; AltName: Full=Glutathione S-conjugate-transporting ATPase 9; AltName: Full=Multidrug resistance-assoc	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Sma3	Multidrug resistance protein ABC transporter family	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	4.516e-10	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	5.89246e-42	-

Source	Gene names
Sma3	At1g04120; At1g30400; At1g30410; At1g30420; At2g07680; At2g34660; At2g47800; At3g13080; At3g13090; At3g13100; At3g21250; At3g59140; At3g60160; At3g60970; At3g62700; B1065G12.13; B1157F09.14; CHLREDRAFT_119551; CHLREDRAFT_134058; CHLREDRAFT_141872; CHLREDR

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfonylurea receptor activity	GO:0008281	Molecular Function	-
Sma3	folic acid transporter activity	GO:0008517	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	chlorophyll catabolite transmembrane transporter activity	GO:0010290	Molecular Function	-
Sma3	glutathione S-conjugate-exporting ATPase activity	GO:0015431	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G60970.1	ATMRP15, MRP15, ABCC15 multidrug resistance-associated protein 15 chr3:22557535-22561575 FORWARD LENGTH=1053	70%
RefSeq	Arabidopsis thaliana	NP_191656.2	putative ABC transporter C-15 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002321253.1	multidrug resistance protein ABC transporter family [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSU0

Fln msg: your sequence is longer than subject: 289 - 131

Fln protein: MISVERIIQYSHISSEAPLVIKDSRPPDEWPSKGTISLDNLQVRYDKHLPFVLKNLTCTFPGSQKVGVVGRTGGGKSTLIQVLFRLIEPTEGKIIIDGMDICTIGLHDLRSKLSIIPQEPAMFEGTMRVNLDPLEEYSDVDIWQALDKCQLGDIMRAKEGKLNSTVVENGENWSVGQRQLVCLGRALLKRSRILVLDEATASVDTATDGVIQRVIRSEFADCTVITVAHRIHSVIDSDLVLVLSEGRILEYDSPLKLLEDKSSAFSKLIQEYSVRSASASNLAALNCN*

Protein Length: 290

Fln nts: CAAGTTATATGGGATGCATGCGTCGCTGAGAGTAAA_-_ATGATTTCAGTAGAAAGGATCATACAATATTCACATATTTCAAGTGAAGCTCCATTGGTGATTAAAGATTCCAGACCACCTGATGAATGGCCATCCAAAGGAACAATATCCCTTGATAACTTACAGGTCCGCTATGACAAACACTTACCATTTGTGTTGAAAAATCTCACATGCACGTTCCCTGGAAGTCAAAAGGTTGGAGTTGTTGGGCGCACAGGAGGTGGCAAATCTACTCTCATTCAAGTTCTCTTTAGGCTTATAGAACCAACAGAAGGAAAGATTATTATCGATGGCATGGATATCTGCACAATAGGTCTACATGACCTTAGATCCAAATTGAGCATCATCCCTCAAGAGCCGGCAATGTTTGAAGGAACAATGCGAGTTAATCTAGATCCACTTGAAGAATACTCAGATGTTGATATATGGCAGGCTTTAGATAAATGTCAGCTGGGGGACATAATGCGGGCCAAGGAAGGAAAACTAAATTCAACAGTTGTCGAAAATGGGGAAAACTGGAGTGTTGGCCAGCGGCAGCTGGTGTGCCTTGGACGAGCCCTGCTCAAACGAAGTCGCATCCTGGTGCTTGACGAAGCTACAGCTTCTGTGGACACTGCAACCGACGGTGTTATACAGCGTGTAATTCGTTCAGAGTTTGCAGATTGCACTGTCATCACCGTGGCTCACAGAATCCATTCTGTAATTGACAGCGATCTGGTTCTGGTACTCAGCGAAGGAAGAATTCTGGAATATGACAGTCCACTAAAGTTGCTGGAGGACAAAAGCTCGGCATTTTCAAAGCTCATTCAGGAGTATTCTGTGAGATCAGCCAGCGCCTCTAACTTAGCAGCATTAAACTGCAATTAG___ATGTCGATTCTATCTAGATATATGGCTTGTAAAAGCATTGAAGAAGATGAACTCTAGATGATCTAGGCAAAATATTTCAGCAAACCCAGTTCTAGAGAGTTTAGGCAATGGGAGCTACAAATGATGTAGGGAAGTTTTCGTTGATTGGATGACATTGTTTTTGAACTGCCCATGAATGCAAAGATAGTTATTACGCGGGTGTTCAATTATATAGATGAAGTGAGAGTGGAGAAGACTGAACTACAGAAAGGAACTTCTCGTCTACTGCGACACTCCAATTTTAACGAAAATTATGAATGGCCACTTTTAGTTTTTTATTCACTCTATAAAATTAAATTATGTGGAGCGTACAAAGTAATGTCAGTTCATAG

Fln Alignment:

Contig7026___LGDIMRAKEGKLNSTVVENGENWSVGQRQLVCLGRALLKRSRILVLDEATASVDTATDGVIQRVIRSEFADCTVITVAHRIHSVIDSDLVLVLSEGRILEYDSPLKLLEDKSSAFSKLIQEY
A9NSU0______________MGKSIEDLPNQLDSSVSDEGENWSAGQRQLLCLGRVLLRRNRILVLDEATASIDSATDALLQKVIRHEFSNCTVITIAHRVPTVIDSDMVLTLSDGKLAEYDNPAKLMENKSSLFAKLVAEY

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
378		20		80	0.995493
692	85	14			0.993533
694		16	83		0.994512
697		83		16	0.994512
775		50		50	1.0
784		50		50	1.0
814			40	60	1.0
817	60	40			1.0
820	40		60		1.0
822		60	40		1.0
826		40		60	1.0
831	60		40		1.0
847	40			60	1.0
854	60		40		1.0
883		60	40		1.0
901		60		40	1.0
913	85		14		0.993533
915			71	28	1.0
925	71			28	1.0
933	28			71	1.0
937	14		85		0.993533
945			28	71	1.0
956	71		28		1.0
976		33		66	1.0
981		33		66	1.0
987		20		80	0.995493
988	80	20			0.995493
989	80	20			0.995493
991			80	20	0.995493
995	50		50		1.0
1020		50		50	1.0
1042	66		33		0.997452
1044		66		33	0.997452
1051	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain