SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene7010

Length: 2916 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene7010
AACACAGCCTTATCTGCCACAGACCTCTAAACAATACACTGGAGGCAGATGCACATTCCCAGAATACCAGCTGCCACCCACACGTCCATATAGAAAACCACTATTGATCATAGAAAACAAACCATTTTGTCAGTTAAGCCTTACCAACGTTTGGAGTTATTGTAAAAACTTGGTCAGGCAGTCAGTCAGGCACACATACACATCACTCCCATATCCTGGTATTGCATTACTTATTTACTTTCCCCATCATATAATATTACAGAGGTATGATATTGGAGAATGGATTATGTATCTTTGTTCTGGTTTTTTAAATAGGCATCAGAATTTATATATAAACTATTGCTTCTGGATCATGGGGTTATGAATGAACCTAATATCTAGGGACTAGGGGTATTGCATTTATTCATCGAGATCCCCCACCTTCAGATTTCTAATTATATAAGCTGGCATCAAGAAATTGACCCACTAAATATTTTACCAGAATCAAGGTCTCCTCTTTGACATATTTAAGTACCGAGCTGAGATTTCAATTCATTCGTAGCAGCATCTTCATTCTTTGCTGCTTCTCCGCTTTCTGTATAGAATACCATGCAGCCTTAGAGTAAAAGTTCCATTTCAGAGAAGTATACAGTGAGATTGTCGGAGCAACTTTAGCCCATGGGCGAAGTCGGGCATCTTCAGTTGGGTTCTGTCGATGTATCTGATAGAGCATCAAATGTGTCAAAGAGCAGCTGCAAGGAGATGAATGATGGTACTATTCAGGACGAGAAAAAGAAGAAAACTGAGCTGTGTGTTCCATTTTACAAGCTCTTTTCTTTTGCTGATAAATATGACTATTTGCTCATGTTCGTGGGAACGATAGGTGCAGTCATCCATGGTGCAGCCATGCCTGTCTTCTTTGTGTTCTTCGGAGAATTGATCAATGGATTTGGAAAAAATCAGAGAAATCCTGCCAAAATGGTGGATGAAGTTTCTAAGTATGCCCTGAATTTCCTGTACCTGGGTTTGGTGATCCTGGGTTCCTCATGGGCAGAAATTGCTTGTTGGATGCACACTGGGGAGAGGCAGGTGGGTAAATTGAGAGAGAAATACTTAGAAGCAGTGCTGAAGCAGGATGTGGGATTCTTTGACACGGATGCTATGACCGGGGATATAGTTTTCAGCATTTCCACAGATACTCTTCTCGTTCAAGATGCAATCAGTGAAAAGGTGGGAAATTTTATACACTACCTATCAACATTCTTGGCGGGTTTGGTGGTTGGATTTGTTTCAGCATGGAGATTAGCTATCCTGAGTGTTGCCGTTATACCAGGCATTGCATTTGCTGGAGGTTTATATGCTTATACGATCACAGGATTGACATCTAAGAGCCAAGAAGCTTATGCAAATGCAGGGAACGTTGCAGAACAGGCCATTGCTCAAATCAGAACAGTCTACTCTTTCGTAGGTGAAAACAGAGGATTGAATTCCTATGCAGAAGCTCTACAAACCACATTAAAGCTCGGATACAAAGGAGGAATGGCCAAAGGATTGGGCATCGGATGCACCTATGGAATAGCATTTATGTCTTGGGCACTGGTGTTTTGGTATGCAGGAGTATTCATTAGAAATGGGCAAACAGATGGGGGCAAAGCGTTCACTGCCATTTTCTCTGCTATAGTCGGTGGCATGAGTTTAGGGCAATCATTCTCCAATATTGGTGCATTTGGCAAGGGGAAAGTTGCTGCATACAAGCTGATGGAGATTATTAAACAACAGCCTACAATCATTCATGATGTTTCAGAAGGAAATAAGCTAGCAGAAATCCAGGGCAACATTGACTTCCAAGATGTTACATTCAGTTACCCTTGTCGGCCAGATGTACTGATTTTCCGAAATTTCTCTCTCCAAATCCCAGCTGGAAAGACTATTGCAATAGTGGGGGGTAGCGGTTCTGGGAAGAGCACTGTTGTGGCCCTCATAGAACGCTTTTATGATCCCAGCCAAGGACATATCTACTTAGATGGTCATGATCTCAAAACTTTGCAGCTAAAGTGGCTTCGACAGCAAATTGGGCTGGTAAACCAAGAACCTGCATTGTTTGCTACAACAATACTTGAAAATATACAATATGGAAAAGAGGATGCCACCATGGAAGAAGTTGAAGAAGCTGCAAATGCTTCAAATGCACACAGCTTCATTACCCTACTTCCAGATGGCTACAACACTCAGGTTGGAGAACGAGGGGTTCAGCTATCTGGCGGACAAAAACAACGAGTGGCAATAGCAAGAGCAATGCTAAAGAATCCTAAAATTCTTCTATTAGATGAAGCAACTAGTGCTCTTGATGCAGGTTCTGAAAGCATTGTTCAAGAAGCTCTTGACCGTCTGATGATAGGAAGAACTACTGTTGTTGTTGCGCATCGTCTATCCACCATTAGAAATGCAGACATCATTGCTGTTTTACAGCAGGGTCAGATTGTTGAATTAGGAAATCATGAAGAATTGCTCGCCAAAGGTAGCAGTGGTGCATATTCAGCATTGGTTAAACTCCAAGAAATGGGTATGACAACAGATGGAAGCCTTCCTCTAAGGAAATCCAAATCCACACGCCTCAGTCATTCACTATCAACCAAGTCTCTAAGCCTCCGTTCAGGAAGTTTAAGAGCCCTTAGCTATCAATATAGTACAGGGGCAGATGGGAGACTTGAAATGATTTCAAATGCTGATACAAGCAAGATTGATCCCCCAGCTCAAGGATCTTTCTTTAGACTTCTCAAATTAAATACACCTGAATGGCCCTATGCTCTATTGGGGGCTGCAGGATCAATTTTCTCTGGTTTAATTGGACCAACCTTTGCCATCATAATGAGCAATATGCTTGAAGTTTTCTATTACACCGATAAGGAAGAAATGCAAAGAAAAACCAAAGACATT

Ace file of the UniGene sp_v3.0_unigene7010 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multidrug/pheromone exporter, MDR family, ABC transporter family n=5 Tax=core eudicotyledons RepID=B9IJV9_POPTR	-	-	72%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	49%
Sma3	Multidrug/pheromone exporter, MDR family, ABC transporter family	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphate-transporting ATPase.	EC:3.6.3.27	-	6.704e-18	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	7.51096e-43	-

Source	Gene names
Sma3	At1g02520; At1g02530; At1g10680; At1g27940; At1g28010; At2g36910; At2g39480; At2g47000; At3g28345; At3g28360; At3g28380; At3g28390; At3g28415; At3g28860; At3g30875; At3g55320; At3g62150; At4g01820; At4g01830; At4g18050; At4g25960; At5g46540; CHLREDRAFT_13

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	regulation of cell size	GO:0008361	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	gravitropism	GO:0009630	Biological Process	-
Sma3	response to blue light	GO:0009637	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	positive gravitropism	GO:0009958	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-
Sma3	auxin efflux	GO:0010315	Biological Process	-
Sma3	basipetal auxin transport	GO:0010540	Biological Process	-
Sma3	acropetal auxin transport	GO:0010541	Biological Process	-
Sma3	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	-
Sma3	stamen development	GO:0048443	Biological Process	-
Sma3	lateral root development	GO:0048527	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Vacuolar fusion protein MON1	IPR004353	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G28860.1	ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 ATP binding cassette subfamily B19 chr3:10870287-10877286 REVERSE LENGTH=1252	76%
RefSeq	Arabidopsis thaliana	NP_189528.1	ABC transporter B family member 19 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002323847.1	multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Distance to subject end: 563 aas, your sequence is shorter than subject: 753 - 1316

Fln protein: MGEVGHLQLGSVDVSDRASNVSKSSCKEMNDGTIQDEKKKKTELCVPFYKLFSFADKYDYLLMFVGTIGAVIHGAAMPVFFVFFGELINGFGKNQRNPAKMVDEVSKYALNFLYLGLVILGSSWAEIACWMHTGERQVGKLREKYLEAVLKQDVGFFDTDAMTGDIVFSISTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLAILSVAVIPGIAFAGGLYAYTITGLTSKSQEAYANAGNVAEQAIAQIRTVYSFVGENRGLNSYAEALQTTLKLGYKGGMAKGLGIGCTYGIAFMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNIGAFGKGKVAAYKLMEIIKQQPTIIHDVSEGNKLAEIQGNIDFQDVTFSYPCRPDVLIFRNFSLQIPAGKTIAIVGGSGSGKSTVVALIERFYDPSQGHIYLDGHDLKTLQLKWLRQQIGLVNQEPALFATTILENIQYGKEDATMEEVEEAANASNAHSFITLLPDGYNTQVGERGVQLSGGQKQRVAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMIGRTTVVVAHRLSTIRNADIIAVLQQGQIVELGNHEELLAKGSSGAYSALVKLQEMGMTTDGSLPLRKSKSTRLSHSLSTKSLSLRSGSLRALSYQYSTGADGRLEMISNADTSKIDPPAQGSFFRLLKLNTPEWPYALLGAAGSIFSGLIGPTFAIIMSNMLEVFYYTDKEEMQRKTKDI

Protein Length: 754

Fln nts: AACACAGCCTTATCTGCCACAGACCTCTAAACAATACACTGGAGGCAGATGCACATTCCCAGAATACCAGCTGCCACCCACACGTCCATATAGAAAACCACTATTGATCATAGAAAACAAACCATTTTGTCAGTTAAGCCTTACCAACGTTTGGAGTTATTGTAAAAACTTGGTCAGGCAGTCAGTCAGGCACACATACACATCACTCCCATATCCTGGTATTGCATTACTTATTTACTTTCCCCATCATATAATATTACAGAGGTATGATATTGGAGAATGGATTATGTATCTTTGTTCTGGTTTTTTAAATAGGCATCAGAATTTATATATAAACTATTGCTTCTGGATCATGGGGTTATGAATGAACCTAATATCTAGGGACTAGGGGTATTGCATTTATTCATCGAGATCCCCCACCTTCAGATTTCTAATTATATAAGCTGGCATCAAGAAATTGACCCACTAAATATTTTACCAGAATCAAGGTCTCCTCTTTGACATATTTAAGTACCGAGCTGAGATTTCAATTCATTCGTAGCAGCATCTTCATTCTTTGCTGCTTCTCCGCTTTCTGTATAGAATACCATGCAGCCTTAGAGTAAAAGTTCCATTTCAGAGAAGTATACAGTGAGATTGTCGGAGCAACTTTAGCCC_-_ATGGGCGAAGTCGGGCATCTTCAGTTGGGTTCTGTCGATGTATCTGATAGAGCATCAAATGTGTCAAAGAGCAGCTGCAAGGAGATGAATGATGGTACTATTCAGGACGAGAAAAAGAAGAAAACTGAGCTGTGTGTTCCATTTTACAAGCTCTTTTCTTTTGCTGATAAATATGACTATTTGCTCATGTTCGTGGGAACGATAGGTGCAGTCATCCATGGTGCAGCCATGCCTGTCTTCTTTGTGTTCTTCGGAGAATTGATCAATGGATTTGGAAAAAATCAGAGAAATCCTGCCAAAATGGTGGATGAAGTTTCTAAGTATGCCCTGAATTTCCTGTACCTGGGTTTGGTGATCCTGGGTTCCTCATGGGCAGAAATTGCTTGTTGGATGCACACTGGGGAGAGGCAGGTGGGTAAATTGAGAGAGAAATACTTAGAAGCAGTGCTGAAGCAGGATGTGGGATTCTTTGACACGGATGCTATGACCGGGGATATAGTTTTCAGCATTTCCACAGATACTCTTCTCGTTCAAGATGCAATCAGTGAAAAGGTGGGAAATTTTATACACTACCTATCAACATTCTTGGCGGGTTTGGTGGTTGGATTTGTTTCAGCATGGAGATTAGCTATCCTGAGTGTTGCCGTTATACCAGGCATTGCATTTGCTGGAGGTTTATATGCTTATACGATCACAGGATTGACATCTAAGAGCCAAGAAGCTTATGCAAATGCAGGGAACGTTGCAGAACAGGCCATTGCTCAAATCAGAACAGTCTACTCTTTCGTAGGTGAAAACAGAGGATTGAATTCCTATGCAGAAGCTCTACAAACCACATTAAAGCTCGGATACAAAGGAGGAATGGCCAAAGGATTGGGCATCGGATGCACCTATGGAATAGCATTTATGTCTTGGGCACTGGTGTTTTGGTATGCAGGAGTATTCATTAGAAATGGGCAAACAGATGGGGGCAAAGCGTTCACTGCCATTTTCTCTGCTATAGTCGGTGGCATGAGTTTAGGGCAATCATTCTCCAATATTGGTGCATTTGGCAAGGGGAAAGTTGCTGCATACAAGCTGATGGAGATTATTAAACAACAGCCTACAATCATTCATGATGTTTCAGAAGGAAATAAGCTAGCAGAAATCCAGGGCAACATTGACTTCCAAGATGTTACATTCAGTTACCCTTGTCGGCCAGATGTACTGATTTTCCGAAATTTCTCTCTCCAAATCCCAGCTGGAAAGACTATTGCAATAGTGGGGGGTAGCGGTTCTGGGAAGAGCACTGTTGTGGCCCTCATAGAACGCTTTTATGATCCCAGCCAAGGACATATCTACTTAGATGGTCATGATCTCAAAACTTTGCAGCTAAAGTGGCTTCGACAGCAAATTGGGCTGGTAAACCAAGAACCTGCATTGTTTGCTACAACAATACTTGAAAATATACAATATGGAAAAGAGGATGCCACCATGGAAGAAGTTGAAGAAGCTGCAAATGCTTCAAATGCACACAGCTTCATTACCCTACTTCCAGATGGCTACAACACTCAGGTTGGAGAACGAGGGGTTCAGCTATCTGGCGGACAAAAACAACGAGTGGCAATAGCAAGAGCAATGCTAAAGAATCCTAAAATTCTTCTATTAGATGAAGCAACTAGTGCTCTTGATGCAGGTTCTGAAAGCATTGTTCAAGAAGCTCTTGACCGTCTGATGATAGGAAGAACTACTGTTGTTGTTGCGCATCGTCTATCCACCATTAGAAATGCAGACATCATTGCTGTTTTACAGCAGGGTCAGATTGTTGAATTAGGAAATCATGAAGAATTGCTCGCCAAAGGTAGCAGTGGTGCATATTCAGCATTGGTTAAACTCCAAGAAATGGGTATGACAACAGATGGAAGCCTTCCTCTAAGGAAATCCAAATCCACACGCCTCAGTCATTCACTATCAACCAAGTCTCTAAGCCTCCGTTCAGGAAGTTTAAGAGCCCTTAGCTATCAATATAGTACAGGGGCAGATGGGAGACTTGAAATGATTTCAAATGCTGATACAAGCAAGATTGATCCCCCAGCTCAAGGATCTTTCTTTAGACTTCTCAAATTAAATACACCTGAATGGCCCTATGCTCTATTGGGGGCTGCAGGATCAATTTTCTCTGGTTTAATTGGACCAACCTTTGCCATCATAATGAGCAATATGCTTGAAGTTTTCTATTACACCGATAAGGAAGAAATGCAAAGAAAAACCAAAGACATT

Fln Alignment:

Contig7010___GSVDVSDRASNVSKSSCKEMNDGTIQDEKKKKTELCVPFYKLFSFADKYDYLLMFVGTIGAVIHGAAMPVFFVFFGELINGFGKNQRNPAKMVDEVSKYALNFLYLGLVILGSSWAEIACWMHTGERQVGKLREKYLEAVLKQDVGFFDTDAMTGDIVFSISTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLAILSVAVIPGIAFAGGLYAYTITGLTSKSQEAYANAGNVAEQAIAQIRTVYSFVGENRGLNSYAEALQTTLKLGYKGGMAKGLGIGCTYGIAFMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNIGAFGKGKVAAYKLMEIIKQQPTIIHDVSEGNKLAEIQGNIDFQDVTFSYPCRPDVLIFRNFSLQIPAGKTIAIXXXXXXXXXXXVALIERFYDPSQGHIYLDGHDLKTLQLKWLRQQIGLVNQEPALFATTILENIQYGKEDATMXXXXXXXXXXXAHSFITLLPDGYNTQVGERGVQLSGGQKQRVAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMIGRTTVVVAHRLSTIRNADIIAVLQQGQIVELGNHEELLAKGSSGAYSALVKLQE
E6Y0T0______________GNHDHGAVSLNIEKVSEMNSNMAKAKDKKKKENNKVVPFHKLFVTADSLDKLLMALGTIGAVANGVSIPLMTILFGGLINAFGENSTDGKKVMNEVSKLALEFVYLACGAGVASLLQVSCWMCTGERQATRIRSLYLKTILRQDIGFFDSEASTGEVIGRMSGDTILIQDAMGEKVGKFIQFITTFIAGFVIAFIKGWKLSLVMLSMIPLLVVSGGSMAMIISKMSSRGQQAYSEAANIVEQTIGSIRMVASFTGEKKSIEGYNKSLAIAYNAITQQGLVAGVGLGSVLFIMFCGYALALWYGSRLILDGSYTGGDVINVIFAVLMGGMSLGQTSPSLNAFSAGRAAAYKMFETIDRKPVIDVFDKSGLVLEDIQGDIELKDVRFTYPARPDVQVFSGFSLEIPSGTTAALVGESGSGKSTVISLVERFYDPQAGEVLIDGINIKKFQLKWIRQKIGLVSQEPVLFGTTIKENLLYGKDGATLEEIKAAAELANAAKFINKLPQGFDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDTESERVVQEALDRIMVNRTTVIVAHRLTTVRNADMIAVVQRGSIVEKGSHSQLIT-NPSGAYSQLIHLQE

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1088		14		85	0.993533
1089	14	85			0.993533
1444	33	66			0.997452
1716	20	80			0.995493
1762	16	83			0.994512
1764	83		16		0.994512
1841		11		88	0.923564
1902	88			11	0.923564
1904	11		88		0.923564
1905	88		11		0.923564
1907		88	11		0.923564
1913	87		12		0.992554
1916	12	87			0.992554
1922		87		12	0.992554
1923	87		12		0.992554
1924		12	87		0.992554
1925		12	87		0.992554
1927	87	12			0.992554
1928	75		25		1.0
1929			14	85	0.993533
1933		14	85		0.993533
1935	14		85		0.993533
1937	87		12		0.992554
1953	16			83	0.994512
1958		85		14	0.993533
2661	50	33			1.0
2662	66	33			1.0
2663	16	16			0.988813
2664		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain