SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6989

Length: 1253 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6989 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent protease Lon [Spinacia oleracea]	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Lon protease homolog	-	-	1.333e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	6.18e-17	-

Source	Gene names
Sma3	At5g47040; GSVIVT00015852001; GSVIVT00015853001; LON; LON1; Lon1; MQD22.18; OJ1112_E07.9; Os09g0533400; OsI_32159; OsJ_30122; P0515E01.28; PHYPADRAFT_161045; PHYPADRAFT_76352; PHYPADRAFT_76353; PHYPADRAFT_79526; POPTRDRAFT_827676; POPTRDRAFT_836320; RCOM_

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	ATP-dependent proteolysis	GO:0006510	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001984	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Peptidase S16, ATP-dependent protease La	IPR004815	-	-
Sma3	Peptidase S16, active site	IPR008268	-	-
Sma3	Peptidase S16, Lon C-terminal	IPR008269	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G47040.1	LON2 lon protease 2 chr5:19093356-19098678 REVERSE LENGTH=888	70%
RefSeq	Arabidopsis thaliana	NP_568675.1	ATP-dependent Lon protease [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002329591.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
819	14		85		0.993533
895		60		40	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
222	234	TCA TCA TCA TCA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain