SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6984

Length: 1424 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6984

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	enoyl-CoA hydratase 2 [Arabidopsis thaliana] sp\|Q8VYI3.1\|ECH2_ARATH RecName: Full=Enoyl-CoA hydratase 2, peroxisomal gb\|AAL50100.1\| At1g76150/T23E18_38 [Arabidopsis thaliana] gb\|AAM10336.1\| At1g76150/T23E18_38 [Arabidopsis thaliana] gb\|AEE35803.1\| enoyl-C	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	MaoC-like dehydratase	IPR002539	-	0.0	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76150.1	ECH2, ATECH2 enoyl-CoA hydratase 2 chr1:28575236-28577637 REVERSE LENGTH=309	56%
RefSeq	Arabidopsis thaliana	NP_177742.2	enoyl-CoA hydratase 2 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002307764.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKQ8

Fln msg:

Fln protein: MTSSIPRIEPEMVLAHKQLPESTFTYTERDVALYALGVGACGADAVDEKELKYVYHQDGQSCIEVLPTFAVLFPYKLMTTLFEVPGVHFEPSLLLHGQQYFEIYKPLPTNCCIQNRAHISGLHDKGKAAIIEIETISCNKETGEVLCRNRNTLYLRGAGGFSKTSDLYSYSSPSSNPKVASIIIPKDIPFAIHEDSTKQSQALLYRLSGDYNPLHSDPMIANLAGFSRPILHGLCTLGFAVRAVIKCCCGGQPSLVKSVLGRFLMHVYPGETLMTEMWRSETRIIYQTKVKEREKVVLLGAVLLNHASSAL*

Protein Length: 313

Fln nts: TCTACGATGGGGAATACTCAAATTTATTCGTGCGAATTCTGAATTCTGGAACCGAAGATTTCTGGGCAAACATATACCTACTGTACCCTAAGGAAAAAGTTAATCCAAATCAGTGAGCATAGAGGCTTCCATATTATTTTCAGTTGCATAATAACAGACTCATC_-_ATGACGAGCTCTATTCCTCGAATTGAGCCAGAAATGGTTCTAGCACATAAGCAGCTGCCTGAGTCAACATTCACGTACACTGAAAGGGATGTGGCACTTTATGCACTTGGTGTTGGTGCATGCGGGGCTGATGCTGTTGATGAGAAAGAATTGAAATATGTTTACCATCAAGATGGGCAATCCTGTATTGAGGTGCTACCCACTTTTGCTGTTTTGTTTCCATACAAACTCATGACAACATTGTTCGAGGTTCCTGGTGTCCACTTTGAGCCAAGTCTTTTGTTGCATGGACAACAATATTTCGAGATTTACAAGCCACTTCCAACAAACTGTTGTATTCAAAACAGAGCTCACATCTCGGGACTCCATGATAAAGGAAAAGCAGCTATCATAGAAATAGAAACTATAAGCTGCAACAAAGAAACAGGAGAGGTGCTTTGCAGGAATAGGAATACACTTTATCTCCGTGGTGCAGGTGGCTTCTCAAAGACGTCAGATCTATACTCATACTCATCTCCAAGTTCCAATCCCAAAGTAGCTTCTATTATTATACCTAAGGATATTCCTTTTGCTATACATGAAGACAGCACCAAGCAATCTCAGGCTCTATTATATCGGTTATCTGGAGATTACAATCCTTTGCATTCTGACCCCATGATTGCAAATCTTGCCGGGTTTTCTCGGCCTATACTACATGGATTATGCACACTTGGATTTGCAGTAAGGGCTGTCATCAAGTGTTGTTGTGGAGGGCAACCATCTCTTGTTAAAAGTGTTCTAGGCCGATTTTTGATGCATGTCTACCCCGGTGAAACGCTAATGACAGAGATGTGGCGAAGTGAGACAAGGATAATATATCAAACCAAAGTAAAGGAAAGAGAAAAAGTAGTCTTGTTAGGGGCTGTACTTTTGAATCATGCTTCTTCCGCCTTGTGA___ACTAATCACCTATCAACAAAGAGTTCACTTAATATTAAAGTTGCCCATGATATATTATGTTTATTTATTTTTAGCTGACTCCAGTTTTAGTAGGTACTCATTCTCACCATGGCTTGGAAATCCAACCAAATAAAACCATGTTAAAATATTGAAGGATGTCACAAAGTTTGTGAATTCGGTTGCAGTCCTTTCAACCCCTACTATAATTTATCAGTGAATTAATATTTAGTAAATAATTGGGCGTGACATATGAATTCAAGCCTTTACGATCTAAATTTTTTGAAAGTGTTTTATGACATAAATCTATAGTGAATATTCAGCACG

Fln Alignment:

Contig6984___MTSSIPRIEPEMVLAHKQLPESTFTYTERDVALYALGVGACGADAVDEKELKYVYHQDGQSCIEVLPTFAVLFPYKLMTTLFEVPGVHFEPSLLLHGQQYFEIYKPLPTNCCIQNRAHISGLHDKGKAAIIEIETISCNKETGEVLCRNRNTLYLRGAGGFXXXXXXXXXXXXXXXXXXXXIIIPKDIPFAIHEDSTKQSQALLYRLSGDYNPLHSDPMIANLAGFSRPILHGLCTLGFAVRAVIKCCCGGQPSLVKSVLGRFLMHVYPGETLMTEMWRSETRIIYQTKVKEREKVVLLGAVLLNHASSAL
B8LKQ8______________MTSSIPRIEPELVIAHTLLPESTFTYTERDVAVYALGVGACGANAVDEKELKYVYHQDGQSCIQALPTFAVLFPYRLMLTLFEVPGLHFEPSLLLHGQQYFEIYKPLPTNCCIQNRAHISGLHDKGKAAILEIETISCNKETGEVLCRNRNTLYLRGAGGFSKTSDLYSYSSPSSNPKVAPVTIPKDIPFAIHEDCTQQSQALLYRLSGDYNPLHSDPMIANLAGFSRPILHGLCTLGFAVRAVIKCCCGGQPSLVKSVQGRFLMHVYPGETLITEMWRSETRIIYQTKVKEREKVVLSGAVLMNHVSSAL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
239	20		80		0.999996
325		14		85	0.993533
354		14	85		0.993533
357		14	85		0.993533
369	16			83	0.994512
370	20			80	0.995493
375	20			80	0.995493
424		20	80		0.995493
498		20		80	0.995493
736			80	20	1.0
847		84		15	0.999986
853	85		14		0.999981
858	85	14			0.999981
859	14	85			0.999981
876		15		84	0.999986
1176		85		14	0.993533
1364		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain