SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6963

Length: 2702 nt

UniGene Fasta

>sp_v3.0_unigene6963
CGTCGTGACCTTGGCTGTCACTCAATTTTTATTTATTTTATTTCTTCTCTCGATGAGAGGACCGTTTGGTGAGTGCTGTCTGAGCTCTGCTCTGCGTGTGTTTTGGTTTTGAGCTTTTCTCAGACCAGAAGGATTTAGACCACCGGGAGCCGGCGGTGTGATTGTATTTGGATGGTGTGAAAATGGCCTCTTTTTTCTATTCGTAGAAGTAACCGTTGAACTCTTGGTGGCGAAAAATTGGGCGTGACACCTGGAGAGCCCCTAGGTTTCATTTTTCAACACCATTGATCATAAATGTGCAAGACTTATCTTGATTCTTGAAATGCAAAGAGCCCCTAAGTTCATGGCTGTCATATTTGCAATCCTAGGGTCTTCAGACACTCTGTTGCTGCTGAAAATGTAGCAGGCAGGTTATGTCTGTTAAGCTCATGAACACTCCATAGTATCTGCCCCTGTTATATTCTTTCACATTCAAATCAAGATATGGGAACTTCTAGTAATAGTAGCAGCTCAGGTTTTCTCACTGATCAGTTGTCTAAGAAGACTTCAATATTGGGGCTGAGATTGTGGGTGCTTATTGGGATTGGAGTGGGTGTGTTCATTGTTCTGATATTGTTTTGCTTATCAATATGGCTGACATCAAGGAAGAAGTCCAAGAGGCTGCCTGAGAAGCTGCCATCTGCTTTGATCCCCATGATATCCAAAGAGATTCAAGAAGTGAGGATCGATCCACTGGGTGGCCACAACAACAACAGTCCCATGGGTGGTGCTCAGTTTGCAAGGGATGATTCCAGCGATAGGGATTTGGAAAAATCTGTGTTGCAGATTGGGTATGGGCATCTTTCAAAACCCAGTTCTGATACGGAGAGAGCAAGCTCTGAGGTGGATTCGGGCATCAATGTAAAGCCGATTGAAAGACAGTCTCTGTTGCGCCCACATAGTCAGAAGCCACAGAAAAAGGTTGAAGAAGGGCGCCATGAAATAGGTGTTGTGGTTGAGAGGGAGAGGATTAATGCAGGGGACAGGCATGGTTTTGTATCGTCTGATAAGGGGTCTACTGCAAGTGGAGAGACCCCCAGGTCAACTGAATCGCCTAGTACATCTGTGCCTGAAGTTTCACACCTTGGTTGGGGTCATTGGTACATTCTCAGAGACTTGGAGATCGCTACTAATGGTTTCTCAGATGAAAATGTCATTGGTGAAGGTGGCTATGGCATTGTCTATCGTGGTTTATTGCCTAATGGTAACCCTGTAGCCGTGAAAAATCTGCTTAACAACAGGGGACAAGCTGAAAAGGAGTTCAGAGTGGAGGTGGAGGCAATCGGGCGAGTCAGGCACAAAAATCTTGTTCGTTTGCTTGGGTATTGTGCTGAGGGTGCAGGCAGGATGCTGGTGTATGAGTTCGTTGACAATGGCAACCTGGAACAGTGGCTTCATGGAGATGTAGGGCCTGTTAGTCCACTGACATGGGAAATCCGGATGAAAATTATTCTTGGAACCGCCAAAGGGTTAGCATATTTACATGAAGGGTTGGAACCCAAGGTTGTTCATAGAGATGTAAAATCAAGCAACATTCTCCTGGATAAGCAATGGAATGCCAAGGTTTCAGATTTTGGGTTGGCCAAGCTCCTTGGATCTGAGAAAAGCTATGTCACAACCCGGGTAATGGGCACTTTTGGCTACGTTGCACCGGAGTATGCCAGCACAGGAATGCTGAACGAGAGAAGCGATGTCTACAGCTTTGGAGTACTTATCATGGAGATTATTTCGGGAAGAAGCCCTGTTGATTATGGCAGACCTGCTGGGGAGGTAAACTTGGTAGAATGGCTGAAAATGATGGTGGGGAGCCGAAGGTCTGAGGAAGTGGTAGATCCATTGCTCGAGGATAAACCCACATCCAGGGCATTGAAACGAGCATTGCTGGTATCGCTGCGTTGCGTGGATCCAGATGCTGCCAAGAGGCCAAAGATGGGCCATGTCATACACATGCTGGAGGCAGACGAATTCCCCTTTCGTGATGATCGTCGCCTAGGGCGTGAGGCTGCTGCCCGAGCACGCCGTGAGAATCCAGCTAATGACAGAATCTCGAACTCAAACGGTGACAACACTAGTGAAGGTGAAGTCAGCAGCCCCAGTCACCGAACGAGGCGGAGATTGTGATGACGATGATGGGATTTTTTCTTAATTTCACCGCAGATTCTGTTGGGCCTCATGTGCCTCTGCTCCCTCAAAAGTAGACCTAGACAGTTTGTTGATCGTAGCCAGCTGATATATTATATCATAATTATGGTGCTCATTTGTTATTTGAAGGCCCTGTAACATATGACCGACTGCTGAGAGCACTTAGCATCTGTTTCTGTTAGTGTTTATCAGTGAATTTTTACAGTTATAAAGAAGAATCCTCTCAATTTTTGTCCATTCCTATTGCAGAATATTGGCATTAAAATTTACTGAAAATTCACCCCAGTTTTGTAATTTGGCGGTTGTAGTTTCTGTTCAAATTCAATTCGTCTGTAAATGGGCATTGCAGTGGAGCTTCCATCGATTGTTTACCGTGGTTTGCTGTAATTGCTTTAGTAACAAAAAATCTAACATGCAATCCAAGCTTAGGCCTTTGTAATACAATGGAATTCCAATTAGTTTTAGTCTTTCTGCAAGTTGGGATTTTTTTCTATTATATTGTAATTGAATTTCCATGAGTC

Ace file of the UniGene sp_v3.0_unigene6963

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase n=1 Tax=Cucumis melo subsp. melo RepID=E5GB79_CUCME	-	-	0.0	61%
FL-Next	sp=Probable serine/threonine-protein kinase At1g01540; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Sma3	Somatic embryogenesis receptor kinase, putative	-	-	1.322e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	9.376e-07	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	5.262e-07	-
Sma3		EC:2.7.11.3-	-	4.388e-07	-

Source	Gene names
Sma3	AT3G24550; AT4g01330; AT4g02010; AT4g02630; AT4g34500; A_IG002N01.22; At1g01540; At1g26150; At1g49270; At1g52290; At1g56720; At1g68690; At1g70460; At2g20300; At2g42960; At3g17420; At3g59110; At4g02010; At4g02630; At4g34440; At4g34440/T4L20_20; At4g34500;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protoderm histogenesis	GO:0010068	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	organ formation	GO:0048645	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G01540.2	Protein kinase superfamily protein chr1:195980-198383 FORWARD LENGTH=472	68%
RefSeq	Arabidopsis thaliana	NP_171661.1	putative serine/threonine-protein kinase [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002327160.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3EDL4

Fln msg: your sequence is longer than subject: 559 - 472

Fln protein: MGTSSNSSSSGFLTDQLSKKTSILGLRLWVLIGIGVGVFIVLILFCLSIWLTSRKKSKRLPEKLPSALIPMISKEIQEVRIDPLGGHNNNSPMGGAQFARDDSSDRDLEKSVLQIGYGHLSKPSSDTERASSEVDSGINVKPIERQSLLRPHSQKPQKKVEEGRHEIGVVVERERINAGDRHGFVSSDKGSTASGETPRSTESPSTSVPEVSHLGWGHWYILRDLEIATNGFSDENVIGEGGYGIVYRGLLPNGNPVAVKNLLNNRGQAEKEFRVEVEAIGRVRHKNLVRLLGYCAEGAGRMLVYEFVDNGNLEQWLHGDVGPVSPLTWEIRMKIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKQWNAKVSDFGLAKLLGSEKSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGVLIMEIISGRSPVDYGRPAGEVNLVEWLKMMVGSRRSEEVVDPLLEDKPTSRALKRALLVSLRCVDPDAAKRPKMGHVIHMLEADEFPFRDDRRLGREAAARARRENPANDRISNSNGDNTSEGEVSSPSHRTRRRL*

Protein Length: 560

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTATTTATTTTATTTCTTCTCTCGATGAGAGGACCGTTTGGTGAGTGCTGTCTGAGCTCTGCTCTGCGTGTGTTTTGGTTTTGAGCTTTTCTCAGACCAGAAGGATTTAGACCACCGGGAGCCGGCGGTGTGATTGTATTTGGATGGTGTGAAAATGGCCTCTTTTTTCTATTCGTAGAAGTAACCGTTGAACTCTTGGTGGCGAAAAATTGGGCGTGACACCTGGAGAGCCCCTAGGTTTCATTTTTCAACACCATTGATCATAAATGTGCAAGACTTATCTTGATTCTTGAAATGCAAAGAGCCCCTAAGTTCATGGCTGTCATATTTGCAATCCTAGGGTCTTCAGACACTCTGTTGCTGCTGAAAATGTAGCAGGCAGGTTATGTCTGTTAAGCTCATGAACACTCCATAGTATCTGCCCCTGTTATATTCTTTCACATTCAAATCAAGAT_-_ATGGGAACTTCTAGTAATAGTAGCAGCTCAGGTTTTCTCACTGATCAGTTGTCTAAGAAGACTTCAATATTGGGGCTGAGATTGTGGGTGCTTATTGGGATTGGAGTGGGTGTGTTCATTGTTCTGATATTGTTTTGCTTATCAATATGGCTGACATCAAGGAAGAAGTCCAAGAGGCTGCCTGAGAAGCTGCCATCTGCTTTGATCCCCATGATATCCAAAGAGATTCAAGAAGTGAGGATCGATCCACTGGGTGGCCACAACAACAACAGTCCCATGGGTGGTGCTCAGTTTGCAAGGGATGATTCCAGCGATAGGGATTTGGAAAAATCTGTGTTGCAGATTGGGTATGGGCATCTTTCAAAACCCAGTTCTGATACGGAGAGAGCAAGCTCTGAGGTGGATTCGGGCATCAATGTAAAGCCGATTGAAAGACAGTCTCTGTTGCGCCCACATAGTCAGAAGCCACAGAAAAAGGTTGAAGAAGGGCGCCATGAAATAGGTGTTGTGGTTGAGAGGGAGAGGATTAATGCAGGGGACAGGCATGGTTTTGTATCGTCTGATAAGGGGTCTACTGCAAGTGGAGAGACCCCCAGGTCAACTGAATCGCCTAGTACATCTGTGCCTGAAGTTTCACACCTTGGTTGGGGTCATTGGTACATTCTCAGAGACTTGGAGATCGCTACTAATGGTTTCTCAGATGAAAATGTCATTGGTGAAGGTGGCTATGGCATTGTCTATCGTGGTTTATTGCCTAATGGTAACCCTGTAGCCGTGAAAAATCTGCTTAACAACAGGGGACAAGCTGAAAAGGAGTTCAGAGTGGAGGTGGAGGCAATCGGGCGAGTCAGGCACAAAAATCTTGTTCGTTTGCTTGGGTATTGTGCTGAGGGTGCAGGCAGGATGCTGGTGTATGAGTTCGTTGACAATGGCAACCTGGAACAGTGGCTTCATGGAGATGTAGGGCCTGTTAGTCCACTGACATGGGAAATCCGGATGAAAATTATTCTTGGAACCGCCAAAGGGTTAGCATATTTACATGAAGGGTTGGAACCCAAGGTTGTTCATAGAGATGTAAAATCAAGCAACATTCTCCTGGATAAGCAATGGAATGCCAAGGTTTCAGATTTTGGGTTGGCCAAGCTCCTTGGATCTGAGAAAAGCTATGTCACAACCCGGGTAATGGGCACTTTTGGCTACGTTGCACCGGAGTATGCCAGCACAGGAATGCTGAACGAGAGAAGCGATGTCTACAGCTTTGGAGTACTTATCATGGAGATTATTTCGGGAAGAAGCCCTGTTGATTATGGCAGACCTGCTGGGGAGGTAAACTTGGTAGAATGGCTGAAAATGATGGTGGGGAGCCGAAGGTCTGAGGAAGTGGTAGATCCATTGCTCGAGGATAAACCCACATCCAGGGCATTGAAACGAGCATTGCTGGTATCGCTGCGTTGCGTGGATCCAGATGCTGCCAAGAGGCCAAAGATGGGCCATGTCATACACATGCTGGAGGCAGACGAATTCCCCTTTCGTGATGATCGTCGCCTAGGGCGTGAGGCTGCTGCCCGAGCACGCCGTGAGAATCCAGCTAATGACAGAATCTCGAACTCAAACGGTGACAACACTAGTGAAGGTGAAGTCAGCAGCCCCAGTCACCGAACGAGGCGGAGATTGTGA___TGACGATGATGGGATTTTTTCTTAATTTCACCGCAGATTCTGTTGGGCCTCATGTGCCTCTGCTCCCTCAAAAGTAGACCTAGACAGTTTGTTGATCGTAGCCAGCTGATATATTATATCATAATTATGGTGCTCATTTGTTATTTGAAGGCCCTGTAACATATGACCGACTGCTGAGAGCACTTAGCATCTGTTTCTGTTAGTGTTTATCAGTGAATTTTTACAGTTATAAAGAAGAATCCTCTCAATTTTTGTCCATTCCTATTGCAGAATATTGGCATTAAAATTTACTGAAAATTCACCCCAGTTTTGTAATTTGGCGGTTGTAGTTTCTGTTCAAATTCAATTCGTCTGTAAATGGGCATTGCAGTGGAGCTTCCATCGATTGTTTACCGTGGTTTGCTGTAATTGCTTTAGTAACAAAAAATCTAACATGCAATCCAAGCTTAGGCCTTTGTAATACAATGGAATTCCAATTAGTTTTAGTCTTTCTGCAAGTTGGGATTTTTTTCTATTATATTGTAATTGAATTTCCATGAGTC

Fln Alignment:

Contig6963___KPSSDTERASSEVDSGINVKPIERQSLLRPHSQKPQKKVEEGRHEIGVVVERERINAGDRHGFVSSDKGSTAXXXXXXXXXXXXXXXXXXXHLGWGHWYILRDLEIATNGFSDENVIGEGGYGIVYRGLLPNGNPVAVKNLLNNRGQAEKEFRVEVEAIGRVRHKNLVRLLGYCAEGAGRMLVYEFVDNGNLEQWLHGDVGPVSPLTWEIRMKIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKQWNAKVSDFGLAKLLGSEKSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGVLIMEIISGRSPVDYGRPAGEVNLVEWLKMMVGSRRSEEVVDPLLEDKPTSRALKRALLVSLRCVDPDAAKRPKMGHVIHMLEADE
Q3EDL4______________KPRADF--ASAAIATPPISKEIKEIVPAQNQSVPAEIQVDIGKIEHRVVFS-DRVSSGESRGTASASETAS--------YSGSGNCGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYRGILTDGTKVAVKNLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLEQWIHGDVGDVSPLTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAKLLGSESSYVTTRVMGTFGYVAPEYACTGMLNEKSDIYSFGILIMEIITGRNPVDYSRPQGETNLVDWLKSMVGNRRSEEVVDPKIPEPPSSKALKRVLLVALRCVDPDANKRPKMGHIIHMLEAED

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
129	75		25		0.996473
153			25	75	0.996473
184	25		75		0.996473
307		33		66	0.997452
355	42		57		1.0
396			88	11	0.923564
397	88	11			0.923564
398	88		11		0.923564
399	88	11			0.923564
413	62		37		1.0
507	85		14		0.993533
685	11	88			0.923564
687			11	88	0.923564
688			11	88	0.923564
722	11		88		0.923564
724			88	11	0.923564
758	12			87	0.992554
760	12	87			0.992554
761		87		12	0.992554
762	87			12	0.992554
991		33		66	0.997452
1126		10		90	0.90298
1344	90			10	0.90298
1349	10			90	0.90298
1351			10	90	0.90298
1355	10			90	0.90298
1358		11	88		0.923564
1359	11	88			0.923564
1603	80			20	0.995493
1606			20	80	0.995493
1776	85		14		0.993533
2158	16			83	1.0
2159		16	83		1.0
2161			83	16	1.0
2170		61	38		1.0
2418	15	84			0.999986
2469		16	83		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
743	754	ACA ACA ACA ACA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain