SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6958

Length: 2067 nt

UniGene Fasta

>sp_v3.0_unigene6958
CGTCGTGACCTTGGCTGTCACTCAATCAAGTGTCATCTGTGCATTACCTCGCTTGCTTCGAACAAACCAATTGGCTTTTGTCTTGGGGCTTAGAATGTTCTAAAATTTGCATCTGTTCTCGAGTTCCAGATTGCTGGTTGGGCATCAGTCCGTGCGCTGAGAAGGCCTTGTTGTTGTTTCAATTGAGATCAATGGCAGAAGAGACCGAAGGCTCTCTCGAGTACACACCGACATGGGCAGTTGCAGTGGTTTGCACCATCTTCGTTACAATATCTCTGTTGCTGGAGCGAGGCATTCATCGGCTTGGAAAGACCTTGCGGAAGAGGAACCAAAAGCCATTGTATGAAGCTTTAGAGAAGTTAAAAGAAGAGTTGATGCTTCTGGGGTTTATCTCCCTATTGCTTACCGTTTTTCAAGGGACAATCAATCGCTTTTGCATACCAAAAAGATTTACAAATCACATGTTACCTTGTAAGAGGCCTGAAAGTGATGAAGGCCCTTCTTCAGCGGCTATAATCCATTCTAGAGAATTAATACCATTTCTTGGATCCAATACCAGACGGCTATTATCATCCGGGGGTTCTGAAGGAAGCCACTGTAAGGAGGGAAAGAGACCTTTCTTATCCGTAGAAGCAATGCATCAGTTGCATATCTTCATATTTGTGCTGGCTATTGTCCATGTGGTATTTTGCGTCGTGACCATGCTTCTGGGAAGTGCAAAGATCCGCACATGGAAGCCCTGGGAAAAAGACATTCAAGAAAACAGATACAATCCACAAGATGCTATGAAGAAAATCACCCATGTTGCAAATGATGATTTTGTCAAGACCCATGCTACGGGGACATGGGGAAGTTCGGCTTTACTAAGTTGGATAGTTTCCTTTTTCAGCCAATTTTATGGCTCAGTAAAGAAATCTGACTATAGCACTCTACGATTGAGTTTCATTGAGAAACATTGCAAGTCAAACCCAACTTTTAATTTCCACAATTACATGATGAAAACACTTGAAGCCGACTTCAAGAAGGTTGTTGGTATCAGTGCATCCCTTTGGGGCTTCGTGGTGATTTTCTTGCTCCTCAATATTGAAGGTTGGCATACATATTTTTGGATATCTTTCATCCCTTTGATTCTTTTACTAGCTGTGGGTGCAAAACTGGAGCATATTATTATTCAGCTAGCCCAAGAAGTTGCAGAGAAGCACGTGGCAGTAGTAGGTGATATTGTTGTCGAGCCTTCCGACGAGCACTTTTGGTTTGGCCGGCCTAAGCTGGTCCTTTACTTAATTCACTTTATTCTTTTTCAGAATGCTTTTGAAATAGCATTTTTCTTCTGGATACTGACAACTTACGGTTTTAGCTCATGCATTATGGGGAAAATTGGCTTCATAATTCCAAGGCTTATAGTCGGGGTAGTTATTCAAGTCCTTTGCAGCTACAGTACCCTTCCACTCTATGCCCTTGTTACTCAGATGGGTACCTCATTCAAAAGCGCAATTTTTGAGGAGCATATTCATGAGGGAATCTCTCTATGGCAGAGGAAGGCCAAGGCCATGGCCAAGGTGAAGGCCAAGGGAAGATCAAGTAACAAACCTGAAGATGATGATAAAGGGAGCGTACAACTACTCAAGATCAATGACACATCAATTCATGGTTCTGAAACAACAGAATGTTCAGAGTCCACAATAGACATACCAAAATCATCGTAAAAATAAAATCGGAAATCTTCTTTTTGAATTAGCTCTAAAATGTGAAATACCGTATCAAAAGAGATAAAAATGTGGCAAATTTACTTGTATCAGAGATTTTTGTTTGTGAAAAAGGTCTACAATGAAACCTCAGATGTGGTGTCTGCTTTATATGAAATATAGAATGCCGAAACATTATCCCTAATTGTAAAATGTAGGCGAATTTTGTTCCTTGAAGGCCACTTGAGGTATTTACCGAGTTTATAGTTTGCTCTCTTAGAGAGGCACTAAGGAGATTTTTTGGAACTTACTTTTGTTAATTGAAGGCCACACAAGCTATTTTAATTTTTTTTATAGTTTTCCGTCTGTTAGAGAAAGGCAC

Ace file of the UniGene sp_v3.0_unigene6958

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MLO-like protein 1 n=2 Tax=Vitis vinifera RepID=C6EWE5_VITVI	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mlo-related protein	IPR004326	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02600.1	MLO1, ATMLO1 Seven transmembrane MLO family protein chr4:1144141-1147156 FORWARD LENGTH=526	61%
RefSeq	Arabidopsis thaliana	NP_192169.1	MLO-like protein 1 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002331601.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMC0

Fln msg:

Fln protein: MAEETEGSLEYTPTWAVAVVCTIFVTISLLLERGIHRLGKTLRKRNQKPLYEALEKLKEELMLLGFISLLLTVFQGTINRFCIPKRFTNHMLPCKRPESDEGPSSAAIIHSRELIPFLGSNTRRLLSSGGSEGSHCKEGKRPFLSVEAMHQLHIFIFVLAIVHVVFCVVTMLLGSAKIRTWKPWEKDIQENRYNPQDAMKKITHVANDDFVKTHATGTWGSSALLSWIVSFFSQFYGSVKKSDYSTLRLSFIEKHCKSNPTFNFHNYMMKTLEADFKKVVGISASLWGFVVIFLLLNIEGWHTYFWISFIPLILLLAVGAKLEHIIIQLAQEVAEKHVAVVGDIVVEPSDEHFWFGRPKLVLYLIHFILFQNAFEIAFFFWILTTYGFSSCIMGKIGFIIPRLIVGVVIQVLCSYSTLPLYALVTQMGTSFKSAIFEEHIHEGISLWQRKAKAMAKVKAKGRSSNKPEDDDKGSVQLLKINDTSIHGSETTECSESTIDIPKSS*

Protein Length: 506

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAAGTGTCATCTGTGCATTACCTCGCTTGCTTCGAACAAACCAATTGGCTTTTGTCTTGGGGCTTAGAATGTTCTAAAATTTGCATCTGTTCTCGAGTTCCAGATTGCTGGTTGGGCATCAGTCCGTGCGCTGAGAAGGCCTTGTTGTTGTTTCAATTGAGATCA_-_ATGGCAGAAGAGACCGAAGGCTCTCTCGAGTACACACCGACATGGGCAGTTGCAGTGGTTTGCACCATCTTCGTTACAATATCTCTGTTGCTGGAGCGAGGCATTCATCGGCTTGGAAAGACCTTGCGGAAGAGGAACCAAAAGCCATTGTATGAAGCTTTAGAGAAGTTAAAAGAAGAGTTGATGCTTCTGGGGTTTATCTCCCTATTGCTTACCGTTTTTCAAGGGACAATCAATCGCTTTTGCATACCAAAAAGATTTACAAATCACATGTTACCTTGTAAGAGGCCTGAAAGTGATGAAGGCCCTTCTTCAGCGGCTATAATCCATTCTAGAGAATTAATACCATTTCTTGGATCCAATACCAGACGGCTATTATCATCCGGGGGTTCTGAAGGAAGCCACTGTAAGGAGGGAAAGAGACCTTTCTTATCCGTAGAAGCAATGCATCAGTTGCATATCTTCATATTTGTGCTGGCTATTGTCCATGTGGTATTTTGCGTCGTGACCATGCTTCTGGGAAGTGCAAAGATCCGCACATGGAAGCCCTGGGAAAAAGACATTCAAGAAAACAGATACAATCCACAAGATGCTATGAAGAAAATCACCCATGTTGCAAATGATGATTTTGTCAAGACCCATGCTACGGGGACATGGGGAAGTTCGGCTTTACTAAGTTGGATAGTTTCCTTTTTCAGCCAATTTTATGGCTCAGTAAAGAAATCTGACTATAGCACTCTACGATTGAGTTTCATTGAGAAACATTGCAAGTCAAACCCAACTTTTAATTTCCACAATTACATGATGAAAACACTTGAAGCCGACTTCAAGAAGGTTGTTGGTATCAGTGCATCCCTTTGGGGCTTCGTGGTGATTTTCTTGCTCCTCAATATTGAAGGTTGGCATACATATTTTTGGATATCTTTCATCCCTTTGATTCTTTTACTAGCTGTGGGTGCAAAACTGGAGCATATTATTATTCAGCTAGCCCAAGAAGTTGCAGAGAAGCACGTGGCAGTAGTAGGTGATATTGTTGTCGAGCCTTCCGACGAGCACTTTTGGTTTGGCCGGCCTAAGCTGGTCCTTTACTTAATTCACTTTATTCTTTTTCAGAATGCTTTTGAAATAGCATTTTTCTTCTGGATACTGACAACTTACGGTTTTAGCTCATGCATTATGGGGAAAATTGGCTTCATAATTCCAAGGCTTATAGTCGGGGTAGTTATTCAAGTCCTTTGCAGCTACAGTACCCTTCCACTCTATGCCCTTGTTACTCAGATGGGTACCTCATTCAAAAGCGCAATTTTTGAGGAGCATATTCATGAGGGAATCTCTCTATGGCAGAGGAAGGCCAAGGCCATGGCCAAGGTGAAGGCCAAGGGAAGATCAAGTAACAAACCTGAAGATGATGATAAAGGGAGCGTACAACTACTCAAGATCAATGACACATCAATTCATGGTTCTGAAACAACAGAATGTTCAGAGTCCACAATAGACATACCAAAATCATCGTAA___AAATAAAATCGGAAATCTTCTTTTTGAATTAGCTCTAAAATGTGAAATACCGTATCAAAAGAGATAAAAATGTGGCAAATTTACTTGTATCAGAGATTTTTGTTTGTGAAAAAGGTCTACAATGAAACCTCAGATGTGGTGTCTGCTTTATATGAAATATAGAATGCCGAAACATTATCCCTAATTGTAAAATGTAGGCGAATTTTGTTCCTTGAAGGCCACTTGAGGTATTTACCGAGTTTATAGTTTGCTCTCTTAGAGAGGCACTAAGGAGATTTTTTGGAACTTACTTTTGTTAATTGAAGGCCACACAAGCTATTTTAATTTTTTTTATAGTTTTCCGTCTGTTAGAGAAAGGCAC

Fln Alignment:

Contig6958___MAEETEGSLEYTPTWAVAVVCTIFVTISLLLERGIHRLGKTLRKRNQXXXXXXXXXXXXXXXXXGFISLLLTVFQGTINRFCIPKRFTNHMLPCKRPESDEGPSSAAIIHSRELIPFLGSNTRRLLXXXXXXXXHCKEGKRPFLSVEAMHQLHIFIFVLAIVHVVFCVVTMLLGSAKIRTWKPWEKDIQENRYNPQDAMKKITHVANDDFVKTHATGTWGSSALLSWIVSFFSQFYGSVKKSDYSTLRLSFIEKHCKSNPTFNFHNYMMKTLEADFKKVVGISASLWGFVVIFLLLNIEGWHTYFWISFIPLILLLAVGAKLEHIIIQLAQEVAEKHVAVVGDIVVEPSDEHFWFGRPKLVLYLIHFILFQNAFEIAFFFWILTTYGFSSCIMGKIGFIIPRLIVGVVIQVLCSYSTLPLYALVTQMGTSFKSAIFEEHIHEGISLWQRXXXXXXXXXXXGRSSNKPEDDD-KGSVQLLKINDTS
B8LMC0______________MAEETEGSLKYTPTWTVAVVCTIFVGISLCLERGIHRLGKTLRRRNQNPLYEALEKLKEELMLLGFISLLLTAFQGAINRLCLPESFTNHMLPCKRPESAEGPSSEAVNHSRELIAFVGSNTRRLLSSGGSEGSHCSEGKKPFLSLEAVHQLHIFIFVLAIVHVLFSVLTMLLGSAKIRTWKPWEEDIQAKRYGTEDAINRITQVAHHDFVKTHAMGTWGKSDLLSWMVSFLRQFYGSVKKSDYSTLRLGFIEKHCKTNPTFNFHNYMMRTLEADFKKVVGISSYLWGFVVIFLLLNIEGWHTYFWIAFIPLILLLAVGAKLEHIITQLAQEVVEKHTAVEGDLVVRLSDEHFWFGKPKLVLYLIHFILFQNAFEIGFFFWILTTYGFDSCIMGKIAYIIPRLAVGVIIQVLCSYSTLPLYVLVTQMGTSFKREILNEHIHEGLSVWHQ----KAKAKAKGRSTSKPNDDDNKGSIQLPKINGAS

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
807			14	85	0.993533
808			14	85	0.993533
891			87	12	0.992554
1043	20		80		0.995493
1047		83		16	0.994512
1195	83	16			0.994512
1197	83			16	0.994512
1198		16	83		0.994512
1199	83		16		0.994512
1200	83			16	0.994512
1202	16	83			0.994512
1203	83	16			0.994512
1205			83	16	0.994512
1210	85			14	0.993533
1214		14	85		0.993533
1264	20		80		0.995493
1299	20			80	0.995493
1301	16		16	66	0.988813
1302			16	83	0.994512
1303			33	66	1.0
1304		83	16		0.994512
1305	83		16		0.994512
1406			90	10	0.90298
1407			10	90	0.90298
1408		90	10		0.90298
1529		80	20		0.999996
1627		88		11	0.923564
1725		85	14		0.993533
1726			14	85	0.993533
1727			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain