SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6898

Length: 1798 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6898

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9RVZ6_RICCO	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	1,3-beta-glucan synthase	-	-	1.037e-37	-

Source	ECs	Term	Type	e value	Identity
Sma3	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	At1g05570; At1g06490; At2g13680; At2g31960; At2g36850; At3g07160; At3g14570; At3g59100; At4g03550; At4g04970; At5g13000; At5g36870; CALS1; CALS10; CALS11; CALS12; CALS2; CALS3; CALS4; CALS5; CALS6; CALS7; CALS8; CALS9; CFL1; CalS3; CalS9; F12K11.17; F13J1

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	pollen wall assembly	GO:0010208	Biological Process	-
Sma3	developmental growth	GO:0048589	Biological Process	-
Sma3	defense response by callose deposition	GO:0052542	Biological Process	-
Sma3	callose deposition in cell wall	GO:0052543	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G04970.1	ATGSL1, ATGSL01, GSL01, GSL1 glucan synthase-like 1 chr4:2537039-2542434 FORWARD LENGTH=1768	65%
RefSeq	Arabidopsis thaliana	NP_567278.1	callose synthase 11 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002330632.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A848

Fln msg: your sequence is longer than subject: 436 - 248

Fln protein: MLSFYYSTVGFFFNAMLVVLTVYVFLWGRVYMALSGVEEAFLNVADVTNNVALGAVLNQQFIIQLGIFTALPMVIENSIEHGFLSAIWDSFTMQLQLASVFYTFSMGTRTHFFGRTILHGGAKYRATGRGFVVQHKKFAEIYRLYSRSHFVKAIELGILLIVYASYSKLSTNTIVYIILTLSSWFLVFSWTMAPFIFNPSGFDWLKAVYDFDDFMNWIWYKGGKADQCWEVWWYEEHDHLHSTGIWGKVLEILIDIRFLFLQYGIVYQLRIANNSTSILVYLLSWIYVVVALAIYLIITYAEHKYAAKRHIYYRSFQVSVIGFILLVIIVLLARTNLKFIDLITSMLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIPVALLSWLPGFQTLQTRILFNEAFSRGLQISRILVGKKANIE*

Protein Length: 437

Fln nts: GCTCGTGGAGGCATGAGTAAAGCTTCCAAAGTGATAAATATCAGTGAGGATATATTTGCAGGCTTTAATTGCACACTCCGTGGTGGCAATGTAACACATCATGAATACATCCAGGTTGGAAAAGGGCGTGATGTTGGCTTGAATCAGATTTCCATGTTTGAAGCCAAGGTTGCTAGTGGCAATGGTGAACAGGTGTTGAGCAGGGATGTATACAGGCTTGGTCACCGCCTGGATTTTTCCGT_-_ATGCTGTCTTTTTATTACTCAACTGTTGGATTCTTTTTTAACGCCATGTTGGTGGTTCTAACTGTTTATGTATTCCTCTGGGGCCGGGTTTATATGGCTCTTAGTGGAGTGGAGGAAGCTTTTTTAAATGTAGCCGATGTCACAAACAATGTTGCACTTGGGGCAGTTCTCAACCAACAATTCATCATACAGCTTGGTATCTTCACAGCTCTTCCAATGGTCATAGAGAACTCTATAGAGCATGGATTCCTTTCAGCTATCTGGGATTCTTTTACCATGCAACTGCAGTTAGCATCTGTGTTTTATACATTTTCAATGGGTACTCGTACTCACTTCTTTGGCCGGACAATACTTCATGGTGGTGCAAAGTATCGGGCTACAGGGCGTGGATTTGTTGTGCAACATAAGAAATTTGCTGAAATTTACAGACTTTATTCGCGTAGTCATTTTGTGAAGGCAATTGAGCTTGGTATCCTCCTGATAGTGTATGCTTCATACAGTAAACTTAGCACCAATACAATTGTTTATATTATATTAACACTGTCAAGTTGGTTTCTTGTCTTTTCATGGACCATGGCACCCTTTATATTTAACCCATCGGGATTTGATTGGTTAAAGGCTGTCTATGACTTTGATGATTTTATGAATTGGATATGGTACAAGGGTGGGAAAGCGGATCAGTGCTGGGAAGTTTGGTGGTATGAAGAACATGACCATTTACACAGCACAGGTATATGGGGAAAGGTTCTAGAAATACTAATTGACATTCGCTTTCTATTTCTCCAGTATGGTATTGTGTACCAGCTTCGTATTGCGAATAATAGCACAAGTATTTTAGTGTACCTTCTTTCATGGATTTATGTGGTTGTGGCTCTTGCAATTTATCTGATCATAACATATGCTGAACATAAGTATGCTGCAAAGCGACATATCTACTACCGTAGCTTTCAAGTTTCAGTCATTGGCTTCATCCTATTGGTAATCATAGTTCTGCTGGCACGCACTAACCTCAAATTTATAGATCTGATCACAAGTATGCTGGCATTGATGCCAACAGGCTGGGGTTTGATATCAATTGCTCAAGTTCTGAGGCCTCTATTGCAGCCTACCATGGTTTGGGAGATTGTGGTTGCAGTTGCTCGATTGTATGAGATGATATTTGGCATTATTATCATGATTCCTGTGGCTTTGCTTTCATGGTTGCCAGGCTTTCAAACATTGCAGACTCGGATACTCTTCAATGAAGCTTTCAGCAGGGGACTTCAGATCTCACGAATCCTAGTGGGCAAGAAGGCTAATATTGAATAG___CAGTCCAGACAAAGACTAAGCATGAATACTGTTGGAATTTCAGATAGTTGGCTACAAATGACTACGTCTGAAATTTCAACTTTTTAGCTCCAAAACCTGTACTGAACGTCATAGCAGCTTTTTCTATTGATCGGTGACCGGAATAACAAAGTATGTAGATGATTGATGACTTTAATCACATTGGGTAATTATTGTGAATGTTTTATGTCATTGATTAATTGATTATGGTTAATTATCCTATTGCTTGC

Fln Alignment:

Contig6898___MAPFIFNPSGFDWLKAVYDFDDFMNWIWYKGG---KADQCWEVWWYEEHDHLHSTGIWGKVLEILIDIRFLFLQYGIVYQLRIANNSTSILVYLLSWIYVVVALAIYLIITYAEHKYAAKRHIYYRSFQXXXXXXXXXXXXXXXARTNLKFIDLITSMLALMPTGWGLISIAQVLRPLLQPTMVWEIVVAVARLYEMIFGIIIMIPVALLSWLPGFQTLQTRILFNEAFSRGLQISRILVGKKAN
D5A848______________MAPFLFNPSGFDWLKTVDDFDDFMNWIWYRGGILTKSEQCWEVWWTEEHDHLRNTGLWGIVLEILLDLRFFFFQYGIVYQLGISGGSKSIVVYLLSWIYVVVVLAIYIVILYAHDKYAAKQHIYYRAIQALVISCTILAILLLLQLTKLKLVDLVTSLLAFVPTGWGLILIAQVLKPFLQSSIVWEMVIAVARLYEVTFGIIVMIPMAILSWLPGFQSMQTRILFNEAFSRGLQISRILAGKKSN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1533	62	37			1.0
1557			87	12	0.992554
1562	14		85		0.993533
1783			10	90	0.90298
1784	11			88	0.923564
1785	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain