SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6894

Length: 1823 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6894 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chain B, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gb\|AAM92710.1\| putative 40S ribosomal protein S3 [Triticum aestivum]	-	-	2.00386e-43	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	40S ribosomal protein S3	-	-	1.183e-10	-

Source	Gene names
Sma3	AT5G35530; At2g31610; At3g53870; At5g35530; CHLREDRAFT_134051; F5K20_170; GSVIVT00014707001; GSVIVT00016476001; GSVIVT00032258001; GSVIVT00034104001; LOC_Os03g38000; MICPUCDRAFT_26239; MICPUN_91459; MOK9.14; OSJNBa0008D12.4; OSJNBa0072I06.38; OSJNBb0018L1

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Ribosomal protein S3, eukaryotic/archaeal	IPR005703	-	-
Sma3		IPR008282	-	-
Sma3	K homology domain-like, alpha/beta	IPR015946	-	-
Sma3	Ribosomal protein S3, conserved site	IPR018280	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G35530.1	Ribosomal protein S3 family protein chr5:13710355-13712192 REVERSE LENGTH=248	5.99756e-43	80%
RefSeq	Arabidopsis thaliana	NP_198403.1	40S ribosomal protein S3-3 [Arabidopsis thaliana]	8.00141e-43	80%
RefSeq	Populus trichocarpa	XP_002308530.1	predicted protein [Populus trichocarpa]	0.0	81%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR91

Fln msg: Separated hits, possible frame ERROR between 934 and 1030, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 153 - 233

Fln protein: CRACYGVLRFIMESGAKGCExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDRAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPLPDLVTIHTPKDEEDFSAKPIIGNEVEILA*

Protein Length: 154

Fln nts: GGGATGTCTCAACCACATAGCAGAATGATTTATTTTCCTACTAACCCTTCCCTTCTAGAACTGCAACTTTGCTTTGGGCATCTATACTTCATTGTTGCTTTACCTTTGCCAACTTGTAAGCCTTGCTGATAAGACCTCTCCACGTTTACATTGGCTTGGGATCACAATAAATTTAAAATTTCTCATCCTAGTAATTACATTTGGAGAAATCATTAAAGATCTACTTCCTCGGATGACCATAACTGGCACTTGCCTCTAGAAGTCTCTTCCTTCAATGCGATGACATCTTCCAAATGCCCTTAGATTAAGGATGAAATATATCCATATACCTATGCATCATTTCATTATTTTACTCAGTGTCTAACTTAGTAAATTTCTCATCCTAGTAATTACATTTGGAGAAATCATTAAAGAACTACTTCCTCGGATGACCATAACTGGCACTTGCCTCTAGAAGTCTCTTCCTTCAATGCGATGCCATCTTCCAAATGCCCTTATATTAAGGATGAAATATATCCATATACCAATGCATCATTTCATTATTTTTCTCATGTTCTTTTGTTGCCAAATACGGCCTGAGAGTTTGCTCTCATTCTCCCACCTTTTTGATTCAAAGACAGTCTGTTCATTTATACTTAGGTCCTTCACCAGTTGTCTAGGTTAGCCACTAAATCCAGTACTTGGTCAGCTTCTTTTACAACACATCAAAACTGTTTTTGGCAACCTCTCTATCCATTCCCAGGCTCCTTGAAGATGCCATTGGATTTTTTCTCACATGCAAGAACAATATGAATTATTTGGAGCCTTCACCATTGATTGCTTTAGCCTATTTGTTTGACAAATAATTCCCTCTTTTCTGGTCTTTCTGTG_-_ATGCAGAGCTTGCTATGGAGTGCTGCGGTTCATCATGGAAAGTGGTGCTAAGGGTTGTGAAGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACAGGTTATTGTTAGTGGCAAACTTAGGGCACAGCGTGCTAAGTCAATGAAATTCAAGGATGGCTACATGATTTCTTCTGGTCAACCTGTTAATGAATACATTGATCGGGCAGTTAGGCACGTTTTGTTGAGACAGGGTGTTCTTGGAATTAAAGTGAAGATCATGTTGGATTGGGATCCTAAGGGCAAGCAAGGGCCAACAAAACCATTGCCTGACTTGGTTACCATCCACACTCCCAAGGATGAGGAAGATTTCTCTGCCAAGCCAATCATTGGGAATGAAGTTGAAATATTGGCTTAGGCTTTGCAGCGGTCCTCTGCTTTTTTAGATAAAACAAAATAGGGAAGTTTGTGTCTTTTCCCAGCAGTGTTGTTGGTAAAGATATCATGAGATCATTGGGAGGTATAGTTCTTTAGCTTAGAATGTTAACTTGAAGTACTCGAATATGCAGAATCTTTGAGCTTTTTTAATTCATCTTTAGTTTAGAATACCAGTTTTGCAAAAAATTCACAGTATCAACCTTTTTTGAGATTGTTTTTGGTTTGTGTAAGTGGCTGGGATTCATCGTCGCCCCAAAATTGTATTCCAGCAATATGTAAACCCCAAAATTGTATTCCAGTAATTATTTATCTTATGCAACTGTTGGTAGCAATAAGAATCTAAACACAGTAATAGTATGATTCTAGTTAATTTCAGTATTTGGTAGGAAAATATTGTAGGTGTTGCACCCTCTCCTCCTTGAATCATTCTCCGATGTTGTCCTATGAAATTATCATATTATCATTTTGAGGGTG

Fln Alignment:

Contig6894___RACYGVLRFIMESGAKGCEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDRAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPLPDLVTIHTPKDEEDFSAKPIIGNEVEILA
A9NR91______________RACYGVLRFIMESGAKGCEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDRAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPLPDFVTIYTPKDEEDFSSKPSVGNEVEILA

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1005	33		66		0.997452
1148		85		14	0.993533
1210		14		85	0.993533
1570	87		12		0.992554
1607	80			20	0.999996
1737			66	33	0.997452
1738	66		33		0.997452
1742	66		33		0.997452
1745		33	66		0.997452
1754	75		25		0.996473
1756		75		25	0.996473
1757	75	25			0.996473
1759	75	25			0.996473
1761	25			75	0.996473
1762		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain