SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6887

Length: 2461 nt

UniGene Fasta

>sp_v3.0_unigene6887
GAAAAGGAGAAGAAACGGAAAGAGAAGACAGAAGCACATCTTTATACTATTATTAAAGTGGCACGGGATGAAGATCTTGCAGATCAAATTGGGAAGGACATATATTTTGATCTTGTAGATCATGACAAGGTCCGAAGTTTTCGTGTGCAGAAGCAACAACCTTTTACCTCTTTCAAGGAAGAGGCGGCAAAGGAATTTGGAATTCCAGTACAGTATCTACGTTTTTGGTTGTGGGCTAAGCGACAAAACCATACGTATCGGCCCAATAGACCTCTAACACCATTAGAGGAGTCCCAATCAGTTGGTCACTTGAGGGAGGTTTCAAGTAAGGTGCAAAGTCCAGAGTTAAAATTGTTTATGGAAGTAAAGCATGGCCCGGATCTTTGCTTTCTTCCACCACCTGAAAAGAAGAAGGACGATATACTCCTTTTCTTCAAACTATATGATCCAGAGAAAGAATCACTGCGATATGTTGGAAGGAGTTTTGAGAAGTCTGGAGGTAAACCAGCAGACATTTTACTGAAACTTAATGAAATGGCTGGGTTTCCACCAGACACCGAAATTGAGCTTTATGAGGAAATTAAGTTTGAACCTTGTGTTATGTGTGAGCGTATTGACAAGAGAGTTCCTTTCCGAAATAGCCAGATTGAAGATGGAGATATTATTTGCTTTCAGAGGGTTCTCTCGACAGATGAGGAGGAACGGTATCGATATCCACATGTGCGGTTGTTTTTGGAGTATGTGCGTAACAGACAGATTGTTCATTTCCGGCGTCTGGATAAGCCAAAAGAAGATGATTTTTGTCTTGAACTGTCAAAGCTGGATTCTTATGATGATGTTGTTAAGAGGGTTGCAAATCAGCTTGGTTTAGATGATCCTTCAAAACTTAGGCTCACGCCACATAACTGTTATTCGCAGCAGCCAAAACCTCAACCAATCAAGCATCGAGGTGTTGACCACTTGAGTGATATGCTGGTGCATTACAATCAGATTTCGGATATATTGTATTATGAAGTACTGGATATACCACTTTCAGAGCTGCAAGGCTTGAAATCTTTAAAGGTTACATTTCACCATGCAATGAAAGATGAGATATCCGTGCATGTTATACGACTACCGAAACACAGCACTGTTGGTGATGTCCTAAATGAACTCAAAACAAAGGTGGAGCTATCAAACCCAAATGCAGAGCTTCGACTACTTGAGGTCTTCTACCACAAAATTTACAAGATTTTTTCTATAAATGAAAAGATTGAGAACATAAATGATCAGTATTGGACTTTGCGGGCAGAGGAGATCCCAGAAGAAGAGAGGAATCTGAGTCCAGGTGACAAGTTGATTCATGTTTACCATTTTAACAAGGATTCATCACAAAACCATATAATCCAGAACTTTGGAGAGCCTTTCTTTTTTGTTATTCATGAGGGTGAGATCTTATCAGAGGTTAAAGAACGAATCAAGAAGAAATTGCAGGTCCCTGATGAAGAATTTGCTAAGTGGAAGTTTGCATTCCTTTCCTTGGGTCGTCCTGAGTACCTTCAAGATACAGACATTGTACACCATCGTTTTCAGAGGCGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGGTTGGAGCATTCTGACAATACATCGAAGAGAATTCACCAAGTCAGCCAGAATCGCCATTCATTTGAGAGGTCTGTGAAGATATACAATTGAGAAGCAGGGATTGCTTATCCTGTAGCAATTCTCTTTTTATGGATGGGACTTGAGGTTGATTCATCTGTAATATAAATCATATGATAGTTTGGATGGATGTCCACACTTCTCTATGCTATAGAGTATTGGAGTGTTATAACAGAAGTATATTAGTTTCAGATCCAGCATGTGACAAAGATCAAGTTAAAATTGCGGTTCTATCCATCTCATTTTATGTTTGTGTAAAATGGAATTACAGGCTGCTTGTTGAGAAGGGTTTCAAATGGCATGTAATATTTAGATCTTAGCTTCTAATATGTTCTATACCAGAGCAAGCAACTGTATAGATTTAATACGTTTTGGAGGGAAATCTCCAAGTGAGTTGGATATTGTAGATTATTCGGAGACTATCACAATGTATCTATAGTACATGGGGTATTCTGAACTACTGTCCTGTACTTTTCACCATGTCGGTATTACAACAGCAGCTTGCTCACGTAGGATTGATCATCTGTACCATTATTAATTTGTTTTCTTTTGGGACACAAATTCCTTTGGCAAAATTTAAGCGTTGGGCCTGTGTTGCAATACATGCGTTTCCAGATGATTCTTCAGTCATATCTTATTTTGTGAACAACTACAGTTTGGTTTATGAGAGCATGTACTAAATCGAAATGTTATATGTACATAAATGTTATATGTACATATGTTGCGATTATTAGGGTGGAGAGCAGGAATCTGCGCTTCGTGGTTTGAACATATGCTTGTATTTGTTGCTTCC

Ace file of the UniGene sp_v3.0_unigene6887

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana]	-	-	0.0	73%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%
Sma3	Ubiquitin carboxyl-terminal hydrolase	-	-	5.716e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ubiquitin thiolesterase.	EC:3.1.2.15	-	3.602e-16	-

Source	Gene names
Sma3	At3g11910; At5g06600; CM0545.290.nc; F15M7.13; F26K24.20; GSVIVT00002647001; GSVIVT00017456001; GSVIVT00025066001; GSVIVT00027113001; LOC_Os11g36470; LOC_Os12g30540; MEC18.1; Os01g0771400; Os07g0163800; Os11g0573000; Os12g0489200; OsI_03906; OsI_12112; Os

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	double-stranded DNA binding	GO:0003690	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	MATH	IPR002083	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G11910.1	UBP13 ubiquitin-specific protease 13 chr3:3761758-3770290 REVERSE LENGTH=1115	73%
RefSeq	Arabidopsis thaliana	NP_001189864.1	ubiquitin carboxyl-terminal hydrolase 13 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002316470.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q84WU2

Fln msg: your sequence is shorter than subject: 567 - 1115

Fln protein: EKEKKRKEKTEAHLYTIIKVARDEDLADQIGKDIYFDLVDHDKVRSFRVQKQQPFTSFKEEAAKEFGIPVQYLRFWLWAKRQNHTYRPNRPLTPLEESQSVGHLREVSSKVQSPELKLFMEVKHGPDLCFLPPPEKKKDDILLFFKLYDPEKESLRYVGRSFEKSGGKPADILLKLNEMAGFPPDTEIELYEEIKFEPCVMCERIDKRVPFRNSQIEDGDIICFQRVLSTDEEERYRYPHVRLFLEYVRNRQIVHFRRLDKPKEDDFCLELSKLDSYDDVVKRVANQLGLDDPSKLRLTPHNCYSQQPKPQPIKHRGVDHLSDMLVHYNQISDILYYEVLDIPLSELQGLKSLKVTFHHAMKDEISVHVIRLPKHSTVGDVLNELKTKVELSNPNAELRLLEVFYHKIYKIFSINEKIENINDQYWTLRAEEIPEEERNLSPGDKLIHVYHFNKDSSQNHIIQNFGEPFFFVIHEGEILSEVKERIKKKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVHHRFQRRDVYGAWEQYLGLEHSDNTSKRIHQVSQNRHSFERSVKIYN*

Protein Length: 568

Fln nts: GAAAAGGAGAAGAAACGGAAAGAGAAGACAGAAGCACATCTTTATACTATTATTAAAGTGGCACGGGATGAAGATCTTGCAGATCAAATTGGGAAGGACATATATTTTGATCTTGTAGATCATGACAAGGTCCGAAGTTTTCGTGTGCAGAAGCAACAACCTTTTACCTCTTTCAAGGAAGAGGCGGCAAAGGAATTTGGAATTCCAGTACAGTATCTACGTTTTTGGTTGTGGGCTAAGCGACAAAACCATACGTATCGGCCCAATAGACCTCTAACACCATTAGAGGAGTCCCAATCAGTTGGTCACTTGAGGGAGGTTTCAAGTAAGGTGCAAAGTCCAGAGTTAAAATTGTTTATGGAAGTAAAGCATGGCCCGGATCTTTGCTTTCTTCCACCACCTGAAAAGAAGAAGGACGATATACTCCTTTTCTTCAAACTATATGATCCAGAGAAAGAATCACTGCGATATGTTGGAAGGAGTTTTGAGAAGTCTGGAGGTAAACCAGCAGACATTTTACTGAAACTTAATGAAATGGCTGGGTTTCCACCAGACACCGAAATTGAGCTTTATGAGGAAATTAAGTTTGAACCTTGTGTTATGTGTGAGCGTATTGACAAGAGAGTTCCTTTCCGAAATAGCCAGATTGAAGATGGAGATATTATTTGCTTTCAGAGGGTTCTCTCGACAGATGAGGAGGAACGGTATCGATATCCACATGTGCGGTTGTTTTTGGAGTATGTGCGTAACAGACAGATTGTTCATTTCCGGCGTCTGGATAAGCCAAAAGAAGATGATTTTTGTCTTGAACTGTCAAAGCTGGATTCTTATGATGATGTTGTTAAGAGGGTTGCAAATCAGCTTGGTTTAGATGATCCTTCAAAACTTAGGCTCACGCCACATAACTGTTATTCGCAGCAGCCAAAACCTCAACCAATCAAGCATCGAGGTGTTGACCACTTGAGTGATATGCTGGTGCATTACAATCAGATTTCGGATATATTGTATTATGAAGTACTGGATATACCACTTTCAGAGCTGCAAGGCTTGAAATCTTTAAAGGTTACATTTCACCATGCAATGAAAGATGAGATATCCGTGCATGTTATACGACTACCGAAACACAGCACTGTTGGTGATGTCCTAAATGAACTCAAAACAAAGGTGGAGCTATCAAACCCAAATGCAGAGCTTCGACTACTTGAGGTCTTCTACCACAAAATTTACAAGATTTTTTCTATAAATGAAAAGATTGAGAACATAAATGATCAGTATTGGACTTTGCGGGCAGAGGAGATCCCAGAAGAAGAGAGGAATCTGAGTCCAGGTGACAAGTTGATTCATGTTTACCATTTTAACAAGGATTCATCACAAAACCATATAATCCAGAACTTTGGAGAGCCTTTCTTTTTTGTTATTCATGAGGGTGAGATCTTATCAGAGGTTAAAGAACGAATCAAGAAGAAATTGCAGGTCCCTGATGAAGAATTTGCTAAGTGGAAGTTTGCATTCCTTTCCTTGGGTCGTCCTGAGTACCTTCAAGATACAGACATTGTACACCATCGTTTTCAGAGGCGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGGTTGGAGCATTCTGACAATACATCGAAGAGAATTCACCAAGTCAGCCAGAATCGCCATTCATTTGAGAGGTCTGTGAAGATATACAATTGA___GAAGCAGGGATTGCTTATCCTGTAGCAATTCTCTTTTTATGGATGGGACTTGAGGTTGATTCATCTGTAATATAAATCATATGATAGTTTGGATGGATGTCCACACTTCTCTATGCTATAGAGTATTGGAGTGTTATAACAGAAGTATATTAGTTTCAGATCCAGCATGTGACAAAGATCAAGTTAAAATTGCGGTTCTATCCATCTCATTTTATGTTTGTGTAAAATGGAATTACAGGCTGCTTGTTGAGAAGGGTTTCAAATGGCATGTAATATTTAGATCTTAGCTTCTAATATGTTCTATACCAGAGCAAGCAACTGTATAGATTTAATACGTTTTGGAGGGAAATCTCCAAGTGAGTTGGATATTGTAGATTATTCGGAGACTATCACAATGTATCTATAGTACATGGGGTATTCTGAACTACTGTCCTGTACTTTTCACCATGTCGGTATTACAACAGCAGCTTGCTCACGTAGGATTGATCATCTGTACCATTATTAATTTGTTTTCTTTTGGGACACAAATTCCTTTGGCAAAATTTAAGCGTTGGGCCTGTGTTGCAATACATGCGTTTCCAGATGATTCTTCAGTCATATCTTATTTTGTGAACAACTACAGTTTGGTTTATGAGAGCATGTACTAAATCGAAATGTTATATGTACATAAATGTTATATGTACATATGTTGCGATTATTAGGGTGGAGAGCAGGAATCTGCGCTTCGTGGTTTGAACATATGCTTGTATTTGTTGCTTCC

Fln Alignment:

Contig6887___AHLYTIIKVARDEDLADQIGKDIYFDLVDHDKVRSFRVQKQQPFTSFKEEAAKEFGIPVQYLRFWLWAKRQNHTYRPNRPLTPLEESQSVGHLREVSSKVQSPELKLFMEVKHGPDLCFLPPPEXXXXXXXXXXXXYDPEKESLRYVGRSFEKSGGKPADILLKLNEMAGFPPDTEIELYEEIKFEPCVMCERIDKRVPFRNSQIEDGDIICFQRVLSTDEEERYRYPHVRLFLEYVRNRQIVHFRRLDKPKEDDFCLELSKLDSYDDVVKRVANQLGLDDPSKLRLTPHNCYSQQPKPQPIKHRGVDHLSDMLVHYNQISDILYYEVLDIPLSELQGLKSLKVTFHHAMKDEISVHVIRLPKHSTVGDVLNELKTKVELSNPNAELRLLEVFYHKIYKIFSINEKIENINDQYWTLRAEEIPEEERNLSPGDKLIHVYHFNKDSSQNHIIQNFGEPFFFVIHEGEILSEVKERIKKKLQVPDEEFAKWKFAFLSLGRPEYLQDTDIVHHRFQRRDVYGAWEQYLGLEHSDNTSKRIHQVSQNRHSFERSVKIYN
Q84WU2______________AHLFTTIKVARDDDITEQIGKNIYFDLVDHEKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLSPNEELQTVGQIREASNKANNAELKLFLEIERGPDDLPIPPPEKTSEDILLFFKLYDPENAVLRYVGRLMVKSSSKPMDIVGQLNKMAGFAPDEEIELFEEIKFEPCVMCEQIDKKTSFRLCQIEDGDIICYQKPLSIEESE-FRYPDVPSFLEYVQNRELVRFRTLEKPKEDEFTMELSKLHTYDDVVERVAEKLGLDDPSKLRLTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHSATKDEVIIHNIRLPKQSTVGDVINELKTKVELSHQDAELRLLEVFFHKIYKIFPSTERIENINDQYWTLRAEEIPEEEKNIGPNDRLIHVYHFTKEAGQNQQVQNFGEPFFLVIHEGETLEEIKTRIQKKLHVPDEDFAKWKFASFSMGRPDYLLDTDVVYNRFQRRDVYGAWEQYLGLEHIDNAPKRAYAANQNRHAYEKPVKIYN

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
497	16		83		0.994512
498		16	83		0.994512
500			83	16	0.994512
501			83	16	0.994512
599	16		83		0.994512
600			16	83	0.994512
665		16		83	0.994512
712		75	25		0.996473
714	75		25		0.996473
883			14	85	0.993533
920		85		14	0.993533
1036		12		87	0.992554
2157		75	25		0.996473
2385		33		66	0.997452
2386	33		66		0.997452
2388	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain