SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6886

Length: 2437 nt

UniGene Fasta

>sp_v3.0_unigene6886
TCAACAGGCCAGGAACGAATAGTTCTGCATACTTCTCTTCATATTCAAAGGATGGGATTCCAGGGAAAGGGTATGGGAATCCTGTACAGGGTGGTGGCGGAGGCTCAACCATGGTACTGCACATGAATGTAGGACCTTTAGGCCCATTCACAGGTTATGCTAGTGTCTTGAAAAGCTCAAAGTACTTGAAGCCAGCCCAGCAGTTATTGGATGAGTTTTGCAATGTTGGGGGACAACATCAGAGCAACAATATGCCGAAGGAAAAACTTTCTAAACCTCAAGCTGGATGGGTGGATAGAAGTTCAGGAGGTGGCAGTGTTGTTCAGAATAGTTTAGACATTAAAAGTGATATCAGTGGAAAAATGGGCGACTCCTGTGCTGCAGCATCAACTACCTTCGCCCCTGGAGAAACAAGTGAAAGCGGAATGGAGCAGCTGGCATATTCTGGTGATAGATTCGAAATTCAGAGGAGGCGAACGAAGCTTTTATCGATGCTTGAAGAGGTCCACAGGAGATACAGGCAATATTGTGAACAAATGCAGATGGTTGTTACGTCTTTTGAATCTATAGCCGGTCTAGGAGCGGCAACTCCATACACTGCCTTGGCCCTGAAGGCAATGTCAAGGCACTTTAAATGTTTAAGAGACGCAATCAATAATCAGCTTAGAGTCACAAGTAAGGCATTAGGCGAGGACTCCAGTCTTGCTGGTGTAAGTAGAGGGGAAACACCAAGATTAAGATTTATTGATCAAAACATTAGGCAACAACGTGCAGTGCAGCATTTAGGAATGCTTGAACAACATGCTTGGCGTCCACAGCGAGGACTTCCGGAACGTTCGGTGTCTGTTCTTCGTGCATGGTTATTTGAGCATTTTCTCCACCCGTACCCTACGGATGCCGATAAACATATGTTGGCTAGACAAACCGGTCTTTCAAGAAGTCAGGTTTCCAACTGGTTCATAAATGCTAGAGTTAGGCTCTGGAAGCCGATGGTGGAAGAGATGTACCTGCAGGAAAGCAAGGACTCATCTGAAATGGATATCACTCTAAAAAGAAAGGAAAGTGACTCCAGAGATAAAACTGAGTGTCCTATGGGGAATGAGAAAAATATGAATAAGCATGGAAAGATGATGTTAGATGGAGGGTCAGATAGGCAATCTGCTTCTGAAGGCGGATGTTCCAAATTTGATCACGGTGGCAGCACATCACAAACTGGTCAAGAAAGCTCTGGTACAGCTATGAGCATGCCTCTAGAATCACAGTTTAGGCCAGCTGAAAAAGTTGATGCTATGAGAGAAGCAGATATGAACACTAATAGAAATGTTCGTGAAACCCAGTCTCTGTCCTCAGTTAATGTTGCAACAATAGGGGTTGATAGAAGGCTCGAGGACACTCATGGGTGTCAGAATTTTGATCACGGCACCAAAAGATTTAGGAATGATGAGAGAAACAAGCTTCAAGGATTTGAAAATACAATTGATTTTTCTTCATACAACCATAGCTCCGCCATGGGTGGAAGGTATTCGCATGAGGATTTCACACCTCGATTTGGGAGTGCTGGCGTGTCTTTAACGTTGGGCCTGCGCCACAGTGGAGGTCAAGAGAAGTACAGCAATGGTCTTTATATATCTAGAGATGATGCAGCAGCAGATTCCAATCACCATTATAATATTCACGACAGTCATGATCAAGGCTATGGAAGTGGCTTTGATGCCCAAGACATGCAGTTCAGAAAGCACGTAGGAAGTCAGCTCTTGCATTGATTTAGTGGCTTAATTAGGAACTATAGAAACACTAAAGAGTTTCTTGCAGAAGATGACATCTTAATGCAGACATATAACGTCTCAAATTATGTGGAACGAGGTGAGAGTTTCAACCTTCAACTCCCCATCTCGCTCTGTACAAATTAACCCACGGAAACAGGTAGCTTGCTATTTAAAATTGTGAAAGAAATCTTGTAATATGTCTAGTTCTTAAGCTTGATACCAGCTTGGCCAAAGTGGTCACTGACATTTAATGCTGATGATCATGAATATTGAGGCTGATTAATGCAGCAGCAACAATATTGTCATCCATCGCTGGAGCGGAATAAGTTGCATTTATTTTCCCAGGTAAGAAATGTGAAACTATAGGGCTATGAATGGCATCTTCTACGTCCACAGAAAAGTTAATCGCAGGTAAACTATTTATAACGCTTTAGAAACAAATGCTGGTTCTTGTGATTCATAATAACTTTCAGATGAACAAGCTCCTGCTGGATGGAAAGAAAGTTTCGTTATCTCTTATAATAGTTATACCGGAATGCAAGACTGTATTTTAATATTGTAAAGCTGCCCTTGCCATCAAAGCAACGGGCATTGTACATTAATGATTGGTGGAACATGGTTCCTGGCAGCTTCTTCCGCTTTTGAAGTTACTCTGAAATATTCTCCCTTGG

Ace file of the UniGene sp_v3.0_unigene6886

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative BEL1-like protein (Fragment) n=1 Tax=Gnetum gnemon RepID=Q7XA57_GNEGN	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%
Sma3	Bel1 homeotic protein, putative	-	-	1.036e-25	-

Source	Gene names
Sma3	AP22.90; At1g19700; At1g75410; At2g16400; At2g23760; At4g34610; At4g36870; At5g02030; At5g41410; BEL1; BELL1; BIHD1; BIP; BL1; BL3; BLH10; BLH2; BLH3; BLH4; BLH5; BLH6; BLH7; BLH9; BLR; Bel13; Bel14; Bel22; Bel30; Bel5; C7A10.490; F14P1.20; F16F14.10; F1B

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	maintenance of floral meristem identity	GO:0010076	Biological Process	-
Sma3	maintenance of inflorescence meristem identity	GO:0010077	Biological Process	-
Sma3	fruit development	GO:0010154	Biological Process	-
Sma3	secondary shoot formation	GO:0010223	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-
Sma3		GO:0016481	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	floral whorl morphogenesis	GO:0048457	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-
Sma3	organ formation	GO:0048645	Biological Process	-
Sma3	internode patterning	GO:0080006	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	POX	IPR006563	-	-
Sma3	Protein of unknown function DUF604	IPR006740	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G23760.1	BLH4, SAW2 BEL1-like homeodomain 4 chr2:10107951-10112736 REVERSE LENGTH=627	0.0	50%
RefSeq	Arabidopsis thaliana	NP_179956.1	BEL1-like homeodomain 4 [Arabidopsis thaliana]	0.0	50%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR06

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 551 - 241

Fln protein: MVLHMNVGPLGPFTGYASVLKSSKYLKPAQQLLDEFCNVGGQHQSNNMPKEKLSKPQAGWVDRSSGGGSVVQNSLDIKSDISGKMGDSCAAASTTFAPGETSESGMEQLAYSGDRFEIQRRRTKLLSMLEEVHRRYRQYCEQMQMVVTSFESIAGLGAATPYTALALKAMSRHFKCLRDAINNQLRVTSKALGEDSSLAGVSRGETPRLRFIDQNIRQQRAVQHLGMLEQHAWRPQRGLPERSVSVLRAWLFEHFLHPYPTDADKHMLARQTGLSRSQVSNWFINARVRLWKPMVEEMYLQESKDSSEMDITLKRKESDSRDKTECPMGNEKNMNKHGKMMLDGGSDRQSASEGGCSKFDHGGSTSQTGQESSGTAMSMPLESQFRPAEKVDAMREADMNTNRNVRETQSLSSVNVATIGVDRRLEDTHGCQNFDHGTKRFRNDERNKLQGFENTIDFSSYNHSSAMGGRYSHEDFTPRFGSAGVSLTLGLRHSGGQEKYSNGLYISRDDAAADSNHHYNIHDSHDQGYGSGFDAQDMQFRKHVGSQLLH*

Protein Length: 552

Fln nts: TCAACAGGCCAGGAACGAATAGTTCTGCATACTTCTCTTCATATTCAAAGGATGGGATTCCAGGGAAAGGGTATGGGAATCCTGTACAGGGTGGTGGCGGAGGCTCAACC_-_ATGGTACTGCACATGAATGTAGGACCTTTAGGCCCATTCACAGGTTATGCTAGTGTCTTGAAAAGCTCAAAGTACTTGAAGCCAGCCCAGCAGTTATTGGATGAGTTTTGCAATGTTGGGGGACAACATCAGAGCAACAATATGCCGAAGGAAAAACTTTCTAAACCTCAAGCTGGATGGGTGGATAGAAGTTCAGGAGGTGGCAGTGTTGTTCAGAATAGTTTAGACATTAAAAGTGATATCAGTGGAAAAATGGGCGACTCCTGTGCTGCAGCATCAACTACCTTCGCCCCTGGAGAAACAAGTGAAAGCGGAATGGAGCAGCTGGCATATTCTGGTGATAGATTCGAAATTCAGAGGAGGCGAACGAAGCTTTTATCGATGCTTGAAGAGGTCCACAGGAGATACAGGCAATATTGTGAACAAATGCAGATGGTTGTTACGTCTTTTGAATCTATAGCCGGTCTAGGAGCGGCAACTCCATACACTGCCTTGGCCCTGAAGGCAATGTCAAGGCACTTTAAATGTTTAAGAGACGCAATCAATAATCAGCTTAGAGTCACAAGTAAGGCATTAGGCGAGGACTCCAGTCTTGCTGGTGTAAGTAGAGGGGAAACACCAAGATTAAGATTTATTGATCAAAACATTAGGCAACAACGTGCAGTGCAGCATTTAGGAATGCTTGAACAACATGCTTGGCGTCCACAGCGAGGACTTCCGGAACGTTCGGTGTCTGTTCTTCGTGCATGGTTATTTGAGCATTTTCTCCACCCGTACCCTACGGATGCCGATAAACATATGTTGGCTAGACAAACCGGTCTTTCAAGAAGTCAGGTTTCCAACTGGTTCATAAATGCTAGAGTTAGGCTCTGGAAGCCGATGGTGGAAGAGATGTACCTGCAGGAAAGCAAGGACTCATCTGAAATGGATATCACTCTAAAAAGAAAGGAAAGTGACTCCAGAGATAAAACTGAGTGTCCTATGGGGAATGAGAAAAATATGAATAAGCATGGAAAGATGATGTTAGATGGAGGGTCAGATAGGCAATCTGCTTCTGAAGGCGGATGTTCCAAATTTGATCACGGTGGCAGCACATCACAAACTGGTCAAGAAAGCTCTGGTACAGCTATGAGCATGCCTCTAGAATCACAGTTTAGGCCAGCTGAAAAAGTTGATGCTATGAGAGAAGCAGATATGAACACTAATAGAAATGTTCGTGAAACCCAGTCTCTGTCCTCAGTTAATGTTGCAACAATAGGGGTTGATAGAAGGCTCGAGGACACTCATGGGTGTCAGAATTTTGATCACGGCACCAAAAGATTTAGGAATGATGAGAGAAACAAGCTTCAAGGATTTGAAAATACAATTGATTTTTCTTCATACAACCATAGCTCCGCCATGGGTGGAAGGTATTCGCATGAGGATTTCACACCTCGATTTGGGAGTGCTGGCGTGTCTTTAACGTTGGGCCTGCGCCACAGTGGAGGTCAAGAGAAGTACAGCAATGGTCTTTATATATCTAGAGATGATGCAGCAGCAGATTCCAATCACCATTATAATATTCACGACAGTCATGATCAAGGCTATGGAAGTGGCTTTGATGCCCAAGACATGCAGTTCAGAAAGCACGTAGGAAGTCAGCTCTTGCATTGATTTAGTGGCTTAATTAGGAACTATAGAAACACTAAAGAGTTTCTTGCAGAAGATGACATCTTAATGCAGACATATAACGTCTCAAATTATGTGGAACGAGGTGAGAGTTTCAACCTTCAACTCCCCATCTCGCTCTGTACAAATTAACCCACGGAAACAGGTAGCTTGCTATTTAAAATTGTGAAAGAAATCTTGTAATATGTCTAGTTCTTAAGCTTGATACCAGCTTGGCCAAAGTGGTCACTGACATTTAATGCTGATGATCATGAATATTGAGGCTGATTAATGCAGCAGCAACAATATTGTCATCCATCGCTGGAGCGGAATAAGTTGCATTTATTTTCCCAGGTAAGAAATGTGAAACTATAGGGCTATGAATGGCATCTTCTACGTCCACAGAAAAGTTAATCGCAGGTAAACTATTTATAACGCTTTAGAAACAAATGCTGGTTCTTGTGATTCATAATAACTTTCAGATGAACAAGCTCCTGCTGGATGGAAAGAAAGTTTCGTTATCTCTTATAATAGTTATACCGGAATGCAAGACTGTATTTTAATATTGTAAAGCTGCCCTTGCCATCAAAGCAACGGGCATTGTACATTAATGATTGGTGGAACATGGTTCCTGGCAGCTTCTTCCGCTTTTGAAGTTACTCTGAAATATTCTCCCTTGG

Fln Alignment:

Contig6886___QRRRTKLLSMLEEVHRRYRQYCEQMQMVVTSFESIAGLGAATPYTALALKAMSRHFKCLRDAINNQLRVTSKALGEDSSLAGVSR--------GETPRLRFIDQNIRQQRAVQ---------HLGMLEQHAWRPQRG--LPERSVSVLRAWLFEHFLHPYPTDADKHMLARQTGLSRSQVSNWFINARVRLWKPMVEEMYLQESKDSSEMDITL
A9NR06______________QHRTTVSIGMDPELDQFMEAYCE---MLTKYHEELT-----KPFKE-AMSFLKKIEAQLNSLSKGTIRISPSAENDEKTEGGASSEEVEDGSGGETD-FQEVDHHAVEDRELKDHLLRKYSGYLSSLKQEFMKKKKKGKLPKDARQKLLDWWTVHYKWPYPSETEKIALAECTGLDQKQINNWFINQRKRHWKPS-EDMQLMAMDGQSPHGATL

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
421	12		87		0.992554
422	12	87			0.992554
423			87	12	0.992554
425	87			12	0.992554
434	14		85		0.993533
771	25		75		0.996473
774			75	25	0.996473
836	14			85	0.993533
838		85	14		0.993533
894		16	83		0.994512
897			83	16	0.994512
943	75		25		0.996473
1043		75		25	0.996473
1080	80		20		0.995493
1135	14		85		0.993533
1274	20		80		0.995493
1296		25	75		0.996473
1298			75	25	0.996473
1299	75			25	0.996473
1381		25	75		0.996473
1383	75			25	0.996473
1387			25	75	0.996473
1696			84	15	0.999986
1812	11		88		0.923564
1815			88	11	0.923564
1816	88			11	0.923564
1850	85		14		0.993533
1935	16	83			0.994512
1984		12		87	0.992554
2220	14			85	0.993533
2221		14		85	0.993533
2222	14		85		0.993533
2224			85	14	0.993533
2344		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain