SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6884

Length: 2107 nt

UniGene Fasta

>sp_v3.0_unigene6884
AGGTGCAGGAGATTGTAGGAACAGTTCAAGGCATTAAGATCAGGGTGATTGATACACCTGGGCTTCTAGCTTCCTTTGCTGATCAGCGTCGTAATGAGAAAATTCTTAAATCAGTCAAGCATTTTATCAAGAGGACACCTCCAGATATTGTTTTGTATTTTGATCGGCTGGATATGCAGAGTAGAGACTATGGAGATCTTCCACTATTGCGCACTATTACAGAAACTTTTGGGTCAGCTGTCTGGTTTAATGCAATTGTAGTCCTCACCCATGCTGCATCAGCTCCACCTGATGGGCCAAATGGTACTCCTCTGAGCTATGAGATGTTTGTAGCTCAACGCTCTCATGTTGTTCAACAGGCTATTCGCCAAGCAGCTGGAGACATGCGACTTATGAATCCTGTATCTCTGGTGGAGAATCATTCCCACTGCAGGACCAATAGGGCAGGGCAGAGAGTTCTGCCGAATGGGCAGATTTGGAAGCCTCAATTACTGCTACTTTGCTTCGCATCTAAAATCCTGGCTGAAGCAAATGCACTCCTGAAGTTGCAAGATAGCACACCTGGTAAACCATTTAGTTCTCGCCCAAGGGTCCCACCATTGCCTTTCCTCTTGTCTTCTCTTCTGCAGTCAAGACCTCAGCTGAAGTTGCCAGAAGAACAGTTGGGAGATGAGGATGCTTCAGATGAGGATTTGGATGAGGCTTCAGATACAGAAGATGAGTCAGAGTATGATAAACTACCTCCTTTCAGGCGTTTAAAAAAATCTCAACTAGATAAGTTGAATAAAGAGCAGAGGAAAGCATATTTTGATGAGTTGGAGTACAGAGAAAAACTGTTTATGAAAAAACAGTTGAAAGAAGAAAGGCAGCGTCGGAGGTTTATGAAGAAGATGCCTGGAGCTACAACCAAGGAGGACACTGAAGAAAATGATGACAACATTGAAGACGAAAATGCTGGTGCAGCGACTGTGCCTGTACCAATGCCAGATATGGCTTTGCCGCCATCCTTTGATGCTGATAATCCTACCCATAGATACCGCTACCTTGATACATCCTATCAATGGCTCGTGCGCCCTGTTTTGGAAACTCATGGTTGGGACCACGATGTTGGGTATGAAGGAGTGAACTTGGAGAAGATGTTTGTGATTCGCAATAAAATTCCTGTCTCAATTTCAGGTCAAGTTACAAAGGACAAAAAGGAAGCCAACCTGCAAATGGAATGTGCCGGGACTTTGAAACATGGAGAGGGAAAAATGACTTCGGCAGGACTGGATATTCAGACCCTTGGTAAGGAGCTTGCATACACTGTGCGTACAGAAACCAGGTTTAGTAATTTTAAGCACAATAAAACAACAGCAGGACTTGCCATGACACTATTGGGTGATGCCATAACTGGTGGTATTAAGCTTGAGGACAGATTGATGATTGGCAACAGGTTTAAGCTGGTTATAAATGGGGGTGCCATAACGGGCCGTGGAGATGTTACATATGGAGGAAGTGTAGAAGCTACTTTGAGAGACAAGGACTACCCATTAGGCCGTTCACTTTCTACCTTGGGACTTTCCATAATGGACTGGCATGGGGATCTTGCAATTGGGTGCAACCTGCAATCTCAATTCGCAGTAGGACGGAATGCAACAATGATTGCCCGTGCAAATTTGAATAATCGTGGTGCAGGGCAAGTTAGTATTCGCACAAGTAGTTCAGAGCAACTTCAGCTAGCTTTGATTGGAATCATTCCAATTTTTAGGACTGTTAGAAATAGATTTTTTGGGTCATCTGATCATATGCAGTAGATGAGCGGGACACAGCATCTAGATAGAGATGGATGAATAGGAAAGACCAAGTAGCACTTCTTGATGCAGCTCTTGAAATACCAATCCATGGCAGTTTTTTAAATTCTGTGTAAGATGCATATTATTATAGTGGTTAATGTTTCCTTTTGGTTTGTCAACTTTGTAACTCTTCCAAGGTAATACAACCATGTGAACAAGATTCACAGCCATTCGTGTGAATGATCAAACAAATGCTAAAATTATACATCTATAGTTTACCTTTTTTTTTCAGAAGATTAATAAATTGTAACAAAGAGCAACACTGTATGCAC

Ace file of the UniGene sp_v3.0_unigene6884

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translocase of chloroplast 120 [Arabidopsis thaliana] sp\|Q9LUS2.1\|TC120_ARATH RecName: Full=Translocase of chloroplast 120, chloroplastic; Short=AtToc120; AltName: Full=120 kDa chloroplast outer envelope protein dbj\|BAB02753.1\| chloroplast outer envelope	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Protein translocase, putative	-	-	4.256e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, Acting on GTP; involved in cellular and subcellular movement.	EC:3.6.5.-	-	1.882e-14	-

Source	Gene names
Sma3	At2g16640; At3g16620; At4g02510; At5g20300; F5O24.190; GSVIVT00006412001; GSVIVT00019761001; GSVIVT00027973001; GSVIVT00036085001; IAP86; LOC_Os03g61890; LOC_Os10g40110; LOC_Os12g09570; MGL6.15; MICPUCDRAFT_48918; MICPUN_102350; OSJNBa0072C16.3; OSJNBa008

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid outer membrane	GO:0009527	Cellular Component	-
Sma3	chloroplast outer membrane	GO:0009707	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	viral envelope	GO:0019031	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	protein targeting to chloroplast	GO:0045036	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chloroplast protein import component Toc86/159	IPR005690	-	0.0	-
Sma3	AIG1	IPR006703	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G16620.1	ATTOC120, TOC120 translocon outer complex protein 120 chr3:5658469-5661738 REVERSE LENGTH=1089	67%
RefSeq	Arabidopsis thaliana	NP_188284.1	translocase of chloroplast 120 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002312976.1	predicted protein, partial [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS91

Fln msg: your sequence is longer than subject: 598 - 315

Fln protein: VQEIVGTVQGIKIRVIDTPGLLASFADQRRNEKILKSVKHFIKRTPPDIVLYFDRLDMQSRDYGDLPLLRTITETFGSAVWFNAIVVLTHAASAPPDGPNGTPLSYEMFVAQRSHVVQQAIRQAAGDMRLMNPVSLVENHSHCRTNRAGQRVLPNGQIWKPQLLLLCFASKILAEANALLKLQDSTPGKPFSSRPRVPPLPFLLSSLLQSRPQLKLPEEQLGDEDASDEDLDEASDTEDESEYDKLPPFRRLKKSQLDKLNKEQRKAYFDELEYREKLFMKKQLKEERQRRRFMKKMPGATTKEDTEENDDNIEDENAGAATVPVPMPDMALPPSFDADNPTHRYRYLDTSYQWLVRPVLETHGWDHDVGYEGVNLEKMFVIRNKIPVSISGQVTKDKKEANLQMECAGTLKHGEGKMTSAGLDIQTLGKELAYTVRTETRFSNFKHNKTTAGLAMTLLGDAITGGIKLEDRLMIGNRFKLVINGGAITGRGDVTYGGSVEATLRDKDYPLGRSLSTLGLSIMDWHGDLAIGCNLQSQFAVGRNATMIARANLNNRGAGQVSIRTSSSEQLQLALIGIIPIFRTVRNRFFGSSDHMQ*

Protein Length: 599

Fln nts: AGGTGCAGGAGATTGTAGGAACAGTTCAAGGCATTAAGATCAGGGTGATTGATACACCTGGGCTTCTAGCTTCCTTTGCTGATCAGCGTCGTAATGAGAAAATTCTTAAATCAGTCAAGCATTTTATCAAGAGGACACCTCCAGATATTGTTTTGTATTTTGATCGGCTGGATATGCAGAGTAGAGACTATGGAGATCTTCCACTATTGCGCACTATTACAGAAACTTTTGGGTCAGCTGTCTGGTTTAATGCAATTGTAGTCCTCACCCATGCTGCATCAGCTCCACCTGATGGGCCAAATGGTACTCCTCTGAGCTATGAGATGTTTGTAGCTCAACGCTCTCATGTTGTTCAACAGGCTATTCGCCAAGCAGCTGGAGACATGCGACTTATGAATCCTGTATCTCTGGTGGAGAATCATTCCCACTGCAGGACCAATAGGGCAGGGCAGAGAGTTCTGCCGAATGGGCAGATTTGGAAGCCTCAATTACTGCTACTTTGCTTCGCATCTAAAATCCTGGCTGAAGCAAATGCACTCCTGAAGTTGCAAGATAGCACACCTGGTAAACCATTTAGTTCTCGCCCAAGGGTCCCACCATTGCCTTTCCTCTTGTCTTCTCTTCTGCAGTCAAGACCTCAGCTGAAGTTGCCAGAAGAACAGTTGGGAGATGAGGATGCTTCAGATGAGGATTTGGATGAGGCTTCAGATACAGAAGATGAGTCAGAGTATGATAAACTACCTCCTTTCAGGCGTTTAAAAAAATCTCAACTAGATAAGTTGAATAAAGAGCAGAGGAAAGCATATTTTGATGAGTTGGAGTACAGAGAAAAACTGTTTATGAAAAAACAGTTGAAAGAAGAAAGGCAGCGTCGGAGGTTTATGAAGAAGATGCCTGGAGCTACAACCAAGGAGGACACTGAAGAAAATGATGACAACATTGAAGACGAAAATGCTGGTGCAGCGACTGTGCCTGTACCAATGCCAGATATGGCTTTGCCGCCATCCTTTGATGCTGATAATCCTACCCATAGATACCGCTACCTTGATACATCCTATCAATGGCTCGTGCGCCCTGTTTTGGAAACTCATGGTTGGGACCACGATGTTGGGTATGAAGGAGTGAACTTGGAGAAGATGTTTGTGATTCGCAATAAAATTCCTGTCTCAATTTCAGGTCAAGTTACAAAGGACAAAAAGGAAGCCAACCTGCAAATGGAATGTGCCGGGACTTTGAAACATGGAGAGGGAAAAATGACTTCGGCAGGACTGGATATTCAGACCCTTGGTAAGGAGCTTGCATACACTGTGCGTACAGAAACCAGGTTTAGTAATTTTAAGCACAATAAAACAACAGCAGGACTTGCCATGACACTATTGGGTGATGCCATAACTGGTGGTATTAAGCTTGAGGACAGATTGATGATTGGCAACAGGTTTAAGCTGGTTATAAATGGGGGTGCCATAACGGGCCGTGGAGATGTTACATATGGAGGAAGTGTAGAAGCTACTTTGAGAGACAAGGACTACCCATTAGGCCGTTCACTTTCTACCTTGGGACTTTCCATAATGGACTGGCATGGGGATCTTGCAATTGGGTGCAACCTGCAATCTCAATTCGCAGTAGGACGGAATGCAACAATGATTGCCCGTGCAAATTTGAATAATCGTGGTGCAGGGCAAGTTAGTATTCGCACAAGTAGTTCAGAGCAACTTCAGCTAGCTTTGATTGGAATCATTCCAATTTTTAGGACTGTTAGAAATAGATTTTTTGGGTCATCTGATCATATGCAGTAG___ATGAGCGGGACACAGCATCTAGATAGAGATGGATGAATAGGAAAGACCAAGTAGCACTTCTTGATGCAGCTCTTGAAATACCAATCCATGGCAGTTTTTTAAATTCTGTGTAAGATGCATATTATTATAGTGGTTAATGTTTCCTTTTGGTTTGTCAACTTTGTAACTCTTCCAAGGTAATACAACCATGTGAACAAGATTCACAGCCATTCGTGTGAATGATCAAACAAATGCTAAAATTATACATCTATAGTTTACCTTTTTTTTTCAGAAGATTAATAAATTGTAACAAAGAGCAACACTGTATGCAC

Fln Alignment:

Contig6884___GIKIRVIDTPGLL-ASFADQRRNEKILKSVKHFIKRTPPDIVLYFDRLDMQSRDYGDLPLLRTITETFGSAVWFNAIVVLTHAASAPPDGPNGTPLSYEMFVAQRSHVVQQAIRQAAG--DMRLMNPVSLVENHSHCRTNRAGQRVLPNGQIWKPQLL
C0PS91______________GFTLNIIDTPGLIEGGFV----NDHALDLIKRFLINKTIDILLYVDRLDGYRVDDLDMQVTKAISKSFGQQIWRRGLVVLTHAQLSPPD-----ELRYADFVDRRSAILQAVVRKAAGFKKSETQIPVVLVENSGRCNTNSGGEKVLSDGTVWLPYLV

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
402	11	88			0.923564
460		20		80	0.995493
654	10	90			0.90298
657	90			10	0.90298
705	20	80			0.999996
736		11		88	0.923564
738	88			11	0.923564
739	88			11	0.923564
936	80		20		0.995493
1045		87		12	0.992554
1183	71	28			1.0
1184	28		71		1.0
1376		76	23		1.0
1878	85		14		0.999981
2002	88		11		0.923564
2006		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain