SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6880

Length: 2480 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene6880
TACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCGAAGACGAAGTCCAGTGTTGGATCATGGGCATCTATAATTAGCCGCGTGATTCGAACTCCCGACGTGTTGGGAAGTTTCTTGTCTCGTTAGTCCCCTTCCAGTGGCTACTTAATTAGCAGAAGAGATGGTGCTGGGGAATGGCAGAAGCTCTGCAGGCCAGTACTGTGGTAGTCTGATGTGATGACTGCCGGTTATCACCTGTTGCGTAAGAGAATGGACAAACACACAGGCAAGTCCCGCTACAAATTCTTTTATATGGTATTGGTGTGCTGTGCTGTATGGTGCGTGATATTTTATTTCCCGTTCTTTGCGTTCGAGACTAGTTCGCAGTATAGATCTGAGGGAATTCCTGGCCATGAAAGGGAAAATCAGAATCTTTGGCCACCGAAACCCCTGGCGGAGAAACCCCAAGCACCGAAACCCTTCCTGAAGGCCCTGAAAACCGCAGAAAACAGCAGTGATCCATGCGGTGGGAGGTATATTTATGTGCACGATCTGCCCGCGAAGTTTAATGAAGACATGCTCAAGGAATGCCGGCGGCTGAGCCTGTGGACGAACATGTGTAAATTCACGTCAAATGCCGGGCTTGGCCCTACCCTGGAGAATACCGGGGGGGTTTTCTCGAATACTGGGTGGTTTGCGACGAATCAATTCGCTGTGGATGTGATTTTCCGCAACAGGATGAAGCAGTACGAGTGCCTGACGAATGATTCGTCAATGGCCGCGGCTGTGTTTGTCCCCTTTTATGCGGGTCTTGATATCTCAAGACATCTGTGGGGTTATAATATATCTGTTAGAGATGCTGCGTCGTTGCAACTCATGGATTGGTTGGTTAGCAGGCCGGAATGGGAGATCAATAAAGGGCATGACCATTTTCTTGTTGGGGGAAGAATAACTTGGGATTTCAGGAGGCTTTCTGATTCCGAGAGTGATTGGGGCAGCAAGCTTCTGTTTTTGCCTGCTATGAAAAACATGACCATGCTAGTCGTTGAGGCCAGTCCGTGGAATCGGAACGACATGGCAATCCCTTATCCCACATACTTCCATCCTGCCAAGGATTCTGATATCATCGAATGGCAGAACAGAATGCGGGGCATGAATCGTTCATCGCTGTTTTCCTTTGCTGGGGCCCCTCGCCCCGACATACCAACATCGATCAGGGGGCAGATCATGGATCAGTGCAGAAAATCTAATGTAGGTAAGCTCTTGGAATGTGATCTTGGTGAGAGCAAATGTCACTCACCGAGTACTATTATGAAGATGTTCCAGGAGTCTGTGTTCTGCTTGCAGCCCCAGGGTGATTCCTATACGCGCAGATCCTTTTTCGACTCCATGTTGGCTGGTTGTATTCCGGTCATGTTCCATCCTGGTTCTGCATATGCCCAGTATATCTGGCATCTTCCCAAGAATTATTCAACTTATTCGGTGTTTATTCCTGAGGACGACATCCGGAAGAGAAATATTAGCATAGAGCAGAGACTGCTTCAGATCCATCCCGAACAGGTGAGAAGGATGAGGGATGAGGTGATAAAGCTCATTCCAGCTATAGTGTATGCTGATCCCCGCTCTAAGCTAAACAATTTCAAGGATGCATTTGATATTGCTGTTCAATCCATGATTGATAAAGTTACCAAACTTAGATTGGATATTATAGAAGGCCGAGAAATAGAAGATTATCAAGAAGATGAAGGATCTGAACAATCTGCAAGGAAGTGGGAAGGATTGCGCAGAGAAGGGGAACAAACATGGGATGAGTTTTTCTCTAAGCCAAAGGATGAGGCATCTGGGCAACCTGAATCAAATAGTGCTAAACAGGAATCTCCAGGAATTAATCAAGATCAGCATCAGGCAGAGGAGAAAGCATGAAGTAAGCCAGCGGCAGAAGGTCTATACAATCGGTGGGAAGGGTCCAATATATTTTTGAAGATTAAGTTTACATGATTTTTTGGTAGCAGCTGGAACTGGAACTAATCCTCTGACCAAGGCCTTGGACAATTTTCAAACATTTGCATTCCTGAGTAGTAGTTAGATGGTTCGAGAATTGTACATTCTTAACATTGGCGGATTGCACCCTTCATGATTGCCTGGAGGTTATTGCAGTTGGTTCAGTGGGTACCTGGGTAAGGACTTGGCTGTCATAACATGGGCCATTGTCCTGCTGATTATTTTTTAATTGTATCATTGTGCATATTGCAATTCAATAATGTTTCATCCTATCGAGGCACTTAATTATCCACAATAATGGAGATTAGGAATTGTTATCATGATGCTGGTATCATTTTCAGACTGGTAGATTGTTTTAATGTAAGCTGCCAGGAGTTTTATAGGGCTCAGGAACACTGATAAACCTTTTTGTAAGTGATCGGCCAAGTGTTGAGGTTGATCCTTTATCAATTACTCCTTATTTATTAAAAAATGGGCAATTGAAGTTTCAC

Ace file of the UniGene sp_v3.0_unigene6880 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase, CAZy family GT47 n=1 Tax=Populus trichocarpa RepID=B9GRC8_POPTR	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Xyloglucan galactosyltransferase KATAMARI1, putative	-	-	1.877e-23	-

Source	Gene names
Sma3	AT2G20370; AT4g13990; At1g68470; At1g68470/T26J14_4; At2g20370; At2g29040; At2g31990; At2g32740; At2g32750; At4g13990; At5g41250; F11A3.8; GSVIVT00000408001; GSVIVT00002875001; GSVIVT00024302001; GSVIVT00028497001; GSVIVT00033532001; GSVIVT00038362001; GS

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	integral to Golgi membrane	GO:0030173	Cellular Component	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	beta-lactamase activity	GO:0008800	Molecular Function	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	signal peptide processing	GO:0006465	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	xyloglucan biosynthetic process	GO:0009969	Biological Process	-
Sma3	endomembrane system organization	GO:0010256	Biological Process	-
Sma3	antibiotic catabolic process	GO:0017001	Biological Process	-
Sma3	fucose biosynthetic process	GO:0042353	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-B, conserved site	IPR001018	-	-
Sma3	Peptidase S26B, eukaryotic signal peptidase	IPR001733	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G20370.1	KAM1, MUR3 Exostosin family protein chr2:8792355-8794214 FORWARD LENGTH=619	70%
RefSeq	Arabidopsis thaliana	NP_179627.2	xyloglucan galactosyltransferase KATAMARI1 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002301846.1	glycosyltransferase, CAZy family GT47 [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT31

Fln msg: your sequence is longer than subject: 562 - 155

Fln protein: MTAGYHLLRKRMDKHTGKSRYKFFYMVLVCCAVWCVIFYFPFFAFETSSQYRSEGIPGHERENQNLWPPKPLAEKPQAPKPFLKALKTAENSSDPCGGRYIYVHDLPAKFNEDMLKECRRLSLWTNMCKFTSNAGLGPTLENTGGVFSNTGWFATNQFAVDVIFRNRMKQYECLTNDSSMAAAVFVPFYAGLDISRHLWGYNISVRDAASLQLMDWLVSRPEWEINKGHDHFLVGGRITWDFRRLSDSESDWGSKLLFLPAMKNMTMLVVEASPWNRNDMAIPYPTYFHPAKDSDIIEWQNRMRGMNRSSLFSFAGAPRPDIPTSIRGQIMDQCRKSNVGKLLECDLGESKCHSPSTIMKMFQESVFCLQPQGDSYTRRSFFDSMLAGCIPVMFHPGSAYAQYIWHLPKNYSTYSVFIPEDDIRKRNISIEQRLLQIHPEQVRRMRDEVIKLIPAIVYADPRSKLNNFKDAFDIAVQSMIDKVTKLRLDIIEGREIEDYQEDEGSEQSARKWEGLRREGEQTWDEFFSKPKDEASGQPESNSAKQESPGINQDQHQAEEKA*

Protein Length: 563

Fln nts: TACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCGAAGACGAAGTCCAGTGTTGGATCATGGGCATCTATAATTAGCCGCGTGATTCGAACTCCCGACGTGTTGGGAAGTTTCTTGTCTCGTTAGTCCCCTTCCAGTGGCTACTTAATTAGCAGAAGAGATGGTGCTGGGGAATGGCAGAAGCTCTGCAGGCCAGTACTGTGGTAGTCTGATGTG_-_ATGACTGCCGGTTATCACCTGTTGCGTAAGAGAATGGACAAACACACAGGCAAGTCCCGCTACAAATTCTTTTATATGGTATTGGTGTGCTGTGCTGTATGGTGCGTGATATTTTATTTCCCGTTCTTTGCGTTCGAGACTAGTTCGCAGTATAGATCTGAGGGAATTCCTGGCCATGAAAGGGAAAATCAGAATCTTTGGCCACCGAAACCCCTGGCGGAGAAACCCCAAGCACCGAAACCCTTCCTGAAGGCCCTGAAAACCGCAGAAAACAGCAGTGATCCATGCGGTGGGAGGTATATTTATGTGCACGATCTGCCCGCGAAGTTTAATGAAGACATGCTCAAGGAATGCCGGCGGCTGAGCCTGTGGACGAACATGTGTAAATTCACGTCAAATGCCGGGCTTGGCCCTACCCTGGAGAATACCGGGGGGGTTTTCTCGAATACTGGGTGGTTTGCGACGAATCAATTCGCTGTGGATGTGATTTTCCGCAACAGGATGAAGCAGTACGAGTGCCTGACGAATGATTCGTCAATGGCCGCGGCTGTGTTTGTCCCCTTTTATGCGGGTCTTGATATCTCAAGACATCTGTGGGGTTATAATATATCTGTTAGAGATGCTGCGTCGTTGCAACTCATGGATTGGTTGGTTAGCAGGCCGGAATGGGAGATCAATAAAGGGCATGACCATTTTCTTGTTGGGGGAAGAATAACTTGGGATTTCAGGAGGCTTTCTGATTCCGAGAGTGATTGGGGCAGCAAGCTTCTGTTTTTGCCTGCTATGAAAAACATGACCATGCTAGTCGTTGAGGCCAGTCCGTGGAATCGGAACGACATGGCAATCCCTTATCCCACATACTTCCATCCTGCCAAGGATTCTGATATCATCGAATGGCAGAACAGAATGCGGGGCATGAATCGTTCATCGCTGTTTTCCTTTGCTGGGGCCCCTCGCCCCGACATACCAACATCGATCAGGGGGCAGATCATGGATCAGTGCAGAAAATCTAATGTAGGTAAGCTCTTGGAATGTGATCTTGGTGAGAGCAAATGTCACTCACCGAGTACTATTATGAAGATGTTCCAGGAGTCTGTGTTCTGCTTGCAGCCCCAGGGTGATTCCTATACGCGCAGATCCTTTTTCGACTCCATGTTGGCTGGTTGTATTCCGGTCATGTTCCATCCTGGTTCTGCATATGCCCAGTATATCTGGCATCTTCCCAAGAATTATTCAACTTATTCGGTGTTTATTCCTGAGGACGACATCCGGAAGAGAAATATTAGCATAGAGCAGAGACTGCTTCAGATCCATCCCGAACAGGTGAGAAGGATGAGGGATGAGGTGATAAAGCTCATTCCAGCTATAGTGTATGCTGATCCCCGCTCTAAGCTAAACAATTTCAAGGATGCATTTGATATTGCTGTTCAATCCATGATTGATAAAGTTACCAAACTTAGATTGGATATTATAGAAGGCCGAGAAATAGAAGATTATCAAGAAGATGAAGGATCTGAACAATCTGCAAGGAAGTGGGAAGGATTGCGCAGAGAAGGGGAACAAACATGGGATGAGTTTTTCTCTAAGCCAAAGGATGAGGCATCTGGGCAACCTGAATCAAATAGTGCTAAACAGGAATCTCCAGGAATTAATCAAGATCAGCATCAGGCAGAGGAGAAAGCATGA___AGTAAGCCAGCGGCAGAAGGTCTATACAATCGGTGGGAAGGGTCCAATATATTTTTGAAGATTAAGTTTACATGATTTTTTGGTAGCAGCTGGAACTGGAACTAATCCTCTGACCAAGGCCTTGGACAATTTTCAAACATTTGCATTCCTGAGTAGTAGTTAGATGGTTCGAGAATTGTACATTCTTAACATTGGCGGATTGCACCCTTCATGATTGCCTGGAGGTTATTGCAGTTGGTTCAGTGGGTACCTGGGTAAGGACTTGGCTGTCATAACATGGGCCATTGTCCTGCTGATTATTTTTTAATTGTATCATTGTGCATATTGCAATTCAATAATGTTTCATCCTATCGAGGCACTTAATTATCCACAATAATGGAGATTAGGAATTGTTATCATGATGCTGGTATCATTTTCAGACTGGTAGATTGTTTTAATGTAAGCTGCCAGGAGTTTTATAGGGCTCAGGAACACTGATAAACCTTTTTGTAAGTGATCGGCCAAGTGTTGAGGTTGATCCTTTATCAATTACTCCTTATTTATTAAAAAATGGGCAATTGAAGTTTCAC

Fln Alignment:

Contig6880___KC-HSPSTIMKMFQESVFCLQPQGDSYTRRSFFDSMLAGCIPVMFHPGSAYAQYIWHLPKNYSTYSVFIPEDDI--RKRNISIEQRLLQIHPEQVRRMRDEVIKLIPAIVYADPRSKLNNF---KDAFDIAVQSMIDKVTKLR
A9NT31______________KCSHRPEAVMTELLKANFCLQPSGDSPTRRSTFDALIAGCIPVFFRRDSAYEQYTWHLPSDPETYSVFIAEERMVNSRKALKIEDVLSSYSQEKIRKMREKIVEIMPSLLYMNFAEKDGGEIFPRDAFDLSIEGMLRKVMSSR

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1299	20		80		0.999996
1322	88		11		0.923564
1549		75	25		0.996473
1647		14		85	0.999981
1650	85	14			0.999981
1660	11	88			0.923564
1661	88	11			0.923564
1677	88	11			0.923564
1678		11		88	0.923564
1681	88			11	0.923564
1695	16		66		0.988813
1824	33	66			0.997452
1827		66		33	0.997452
1830		33	66		0.997452
1831	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain