SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6869

Length: 2100 nt

UniGene Fasta

>sp_v3.0_unigene6869
TTTCTGTCCCAATTTGACCCACAGCGTAGTTCCACTATCAGACAAGCTCCTACCGTGATGGAACTTTGGCCCAAACTTTTTAGCAAATCTGAATTTATCCAAACACTCGAGATCACTGAGTACCTTTACTGCAAAAACTTCACAGGATTTTATTTCCGATTCCCCTTTATGTGACGCCTGTCAAGCTGCAGCATCCCTGTTTCACACAATTGACTGCCTGCCGACAGTCGAATGGCCACCGGTGGCTTTACTGGGATCGCCTGTGCTCTAAATCTCATTCTCATTTTATTGGGCTGCGCGACTCTCGCAGAGTGTGCCAACTCGGACCTCCACACTTGTCTCGAAGACTCTGACAACGGTTTGGACGACGTATATGCATCTGCTATCGACCGCTTCGCCATTGATATTGCTGAGGAGGCCACCCCTTCCCCATCTGCCTCTTTCCATGGCGTCTCGCAGGAGATTCTTAGGCTGGCAAAGCTGCCGGAGACCGTGGAATGGCTGAAAAACATCCGCAGAAAAATCCACGAGCGACCTGAACTTGCATATCAAGAGTTCGAGACAAGTGCCCTTGTCAGACGCGAGCTTGATGAAATGGGAATAAAGTATCGGTGGCCCCTGGCGGAAACAGGCGTTGTGGCCTCCATTGGCACAGGAGGCCCTCCATTTGTTGCCCTCAGAGCTGATATGGATGCTCTGCCCATTCAGGAGGAGGTTGACTGGGAACACAAGAGTAAGAACGTTGGGAAAATGCATGCTTGTGGACATGATGGGCATGTCACCATGCTTCTCGGTGCTGCAAAGATATTGCAAGAACGCCGGCTCATGTTGCAGGGAACTGTTGTCCTAATCTTCCAACCAGCAGAGGAAGCAGGTGCTGGGGCACAAAAAAAATGATAAAAGATGGGGCACTAGAGAATGTAGAAGCAATATTCGGAATGCATTTGGCTTATGACTATCCAACTGGTACAGTTTTGTCCAAGCCTGGGTCCTTTGACAGCCGGATGTGGTTTCTTCAAGGCAGTAATAACAGGGAAGGGGGGACATGCAGCACTTCCAGAACTTGCAATTGATCCTATTGTTGCAGCTTCTGCTTGTATTGTCAGCCTACAACATCTTATTTCCCGGGAAACTAACCCTTTGGACTCAAAGGTGGTAACAGTGACTACAAGTCGTGGAGGTGATGCATTCAATGTGATCCCAGACTCGGTTACCATAAGTGGCACATTTCGTGCTTTCTCAAATGAGAGCTTTTATAACCTTAAGCAAAGAATAGAGGAGATTATTGTAGGCCAATCTCTTGTTCAGAGGTGCACTGCAACTGTGGAATTCTTAGAAAAGGAGTATCCATTTATTCCTCCAACTGTGAATGACCAGATTATGCATGATCATGTTTGCAAAGTTGCAGCTGATCTATTTGGTGCACATAATCTAAAAATTGCAACTCCTCTCATGGCTGGAGAAGACTTTGCTTTTTATACCGAGGTTATACCTGCAGGCTTTTTTCTCTTTGGAATGAAAGACGAGACACGTGGATCAATACATGCACCACACACTTCACTATTCACCATTGATGAAAATGTTCTCCCACTTGGTGCTGCGATGCATGCTGCCTTAGCTGAAAGGTACCTTAATGAAGGCAACTCTAGGCCTTCTCAATCTTCAGTAGCGGACACTAACATATTATAGTGAATTCAGATAAAGGACTTGAATTAACACCAATTTAGACCTTAGGGAAAGGAATCTCGAGAATATCCCAATATAGTAAATAAATTTTCATGTTTTTGCATGTAAAAGTAGAGTAGATCTGCTCAGTTACAAGTGAGCTGAAATATCATATTTATGTATTTTTGTGTAACAGCCATATGTACATTGTTTGACGGCTCACTTTGTTTTGTATTGGAAAGATGGTGGGTTTATCCCACATCTATTTAACATCTAAAATCCTGGCATGAGCCCCACTATTTGTTGTGTAGGAACTTTAAAGCATATTAGAGGTGGAAGAAGTTGTAACGAGTGCAACTGAGAAACGCAGATAGTTTAGTGACTAGCCTAGTGACTAGCCTAGACAATCGTAGGTTATGGATTGCTATACTAGTA

Ace file of the UniGene sp_v3.0_unigene6869

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	auxin conjugate hydrolase [Medicago truncatula]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3		IPR010168	-	-
Sma3	Peptidase M20	IPR002933	-	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G51760.1	IAR3, JR3 peptidase M20/M25/M40 family protein chr1:19199562-19201424 FORWARD LENGTH=440	55%
RefSeq	Arabidopsis thaliana	NP_175587.1	IAA-amino acid hydrolase ILR1-like 4 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002302231.1	iaa-amino acid hydrolase 9 [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQG8

Fln msg:

Fln protein: MATGGFTGIACALNLILILLGCATLAECANSDLHTCLEDSDNGLDDVYASAIDRFAIDIAEEATPSPSASFHGVSQEILRLAKLPETVEWLKNIRRKIHERPELAYQEFETSALVRRELDEMGIKYRWPLAETGVVASIGTGGPPFVALRADMDALPIQEEVDWEHKSKNVGKMHACGHDGHVTMLLGAAKILQERRLMLQGTVVLIFQPAEEAGAGAQKK**KMGH*RM*KQYSECIWLMTIQLVQFCPSLGPLTAGCGFFKAVITGKGGHAALPELAIDPIVAASACIVSLQHLISRETNPLDSKVVTVTTSRGGDAFNVIPDSVTISGTFRAFSNESFYNLKQRIEEIIVGQSLVQRCTATVEFLEKEYPFIPPTVNDQIMHDHVCKVAADLFGAHNLKIATPLMAGEDFAFYTEVIPAGFFLFGMKDETRGSIHAPHTSLFTIDENVLPLGAAMHAALAERYLNEGNSRPSQSSVADTNIL*

Protein Length: 487

Fln nts: TTTCTGTCCCAATTTGACCCACAGCGTAGTTCCACTATCAGACAAGCTCCTACCGTGATGGAACTTTGGCCCAAACTTTTTAGCAAATCTGAATTTATCCAAACACTCGAGATCACTGAGTACCTTTACTGCAAAAACTTCACAGGATTTTATTTCCGATTCCCCTTTATGTGACGCCTGTCAAGCTGCAGCATCCCTGTTTCACACAATTGACTGCCTGCCGACAGTCGA_-_ATGGCCACCGGTGGCTTTACTGGGATCGCCTGTGCTCTAAATCTCATTCTCATTTTATTGGGCTGCGCGACTCTCGCAGAGTGTGCCAACTCGGACCTCCACACTTGTCTCGAAGACTCTGACAACGGTTTGGACGACGTATATGCATCTGCTATCGACCGCTTCGCCATTGATATTGCTGAGGAGGCCACCCCTTCCCCATCTGCCTCTTTCCATGGCGTCTCGCAGGAGATTCTTAGGCTGGCAAAGCTGCCGGAGACCGTGGAATGGCTGAAAAACATCCGCAGAAAAATCCACGAGCGACCTGAACTTGCATATCAAGAGTTCGAGACAAGTGCCCTTGTCAGACGCGAGCTTGATGAAATGGGAATAAAGTATCGGTGGCCCCTGGCGGAAACAGGCGTTGTGGCCTCCATTGGCACAGGAGGCCCTCCATTTGTTGCCCTCAGAGCTGATATGGATGCTCTGCCCATTCAGGAGGAGGTTGACTGGGAACACAAGAGTAAGAACGTTGGGAAAATGCATGCTTGTGGACATGATGGGCATGTCACCATGCTTCTCGGTGCTGCAAAGATATTGCAAGAACGCCGGCTCATGTTGCAGGGAACTGTTGTCCTAATCTTCCAACCAGCAGAGGAAGCAGGTGCTGGGGCACAAAAAAAATGATAAAAGATGGGGCACTAGAGAATGTAGAAGCAATATTCGGAATGCATTTGGCTTATGACTATCCAACTGGTACAGTTTTGTCCAAGCCTGGGTCCTTTGACAGCCGGATGTGGTTTCTTCAAGGCAGTAATAACAGGGAAGGGGGGACATGCAGCACTTCCAGAACTTGCAATTGATCCTATTGTTGCAGCTTCTGCTTGTATTGTCAGCCTACAACATCTTATTTCCCGGGAAACTAACCCTTTGGACTCAAAGGTGGTAACAGTGACTACAAGTCGTGGAGGTGATGCATTCAATGTGATCCCAGACTCGGTTACCATAAGTGGCACATTTCGTGCTTTCTCAAATGAGAGCTTTTATAACCTTAAGCAAAGAATAGAGGAGATTATTGTAGGCCAATCTCTTGTTCAGAGGTGCACTGCAACTGTGGAATTCTTAGAAAAGGAGTATCCATTTATTCCTCCAACTGTGAATGACCAGATTATGCATGATCATGTTTGCAAAGTTGCAGCTGATCTATTTGGTGCACATAATCTAAAAATTGCAACTCCTCTCATGGCTGGAGAAGACTTTGCTTTTTATACCGAGGTTATACCTGCAGGCTTTTTTCTCTTTGGAATGAAAGACGAGACACGTGGATCAATACATGCACCACACACTTCACTATTCACCATTGATGAAAATGTTCTCCCACTTGGTGCTGCGATGCATGCTGCCTTAGCTGAAAGGTACCTTAATGAAGGCAACTCTAGGCCTTCTCAATCTTCAGTAGCGGACACTAACATATTATAG___TGAATTCAGATAAAGGACTTGAATTAACACCAATTTAGACCTTAGGGAAAGGAATCTCGAGAATATCCCAATATAGTAAATAAATTTTCATGTTTTTGCATGTAAAAGTAGAGTAGATCTGCTCAGTTACAAGTGAGCTGAAATATCATATTTATGTATTTTTGTGTAACAGCCATATGTACATTGTTTGACGGCTCACTTTGTTTTGTATTGGAAAGATGGTGGGTTTATCCCACATCTATTTAACATCTAAAATCCTGGCATGAGCCCCACTATTTGTTGTGTAGGAACTTTAAAGCATATTAGAGGTGGAAGAAGTTGTAACGAGTGCAACTGAGAAACGCAGATAGTTTAGTGACTAGCCTAGTGACTAGCCTAGACAATCGTAGGTTATGGATTGCTATACTAGTA

Fln Alignment:

Contig6869___CANSDLHTCLEDSDNGLDDVYASAIDRFAIDIAEEATPSPSASFHGVSQEILRLAKLPETVEWLKNIRRKIHERPELAYQEFETSALVRRELDEMGIKYRWPLAETGVVASIGTGGPPFVALRADMDALPIQEEVDWEHKSKNVGKMHACGHDGHVTMLLGAAKILQERRLMLQGTVVLIFQPAEEXXXXXXXXXXXXXH*RM*KQYS----ECIWLMTIQLVQFCPSL----GPLTAGCGFFKAVITGKGGHAALPELAIDPIVAASACIVSLQHLISRETNPLDSKVVTVTTSRGGDAFNVIPDSVTISGTFRAFSNESFYNLKQRIEEIIVGQSLVQRCTATVEFLEKEYPFIPPTVNDQIMHDHVCKVAADLFGAHNLKIATPLMAGEDFAFYTEVIPAGFFLFGMKDETRGSIHAPHTSLFTIDENVLPLGAAMHAALAERYLNEGNSRPSQSSVADTNIL
B8LQG8______________CSNLDLDTRLGDSDNSLDDVYGSAIDRFAIGIAEEGSPSHSASYHGVSQEILRLAKLPETVEWLKNVRRKIHERPELAYQEFETSALIRRELDEMGIKYRWPLAETGVVASIGTGGPPFVALRADMDALPIQEEVEWEHKSKNLGKMHACGHDAHATMLLGAAKILQERQHMLQGTVVLIFQPAEEAGAGAK---------RMIKDGALENVEAIFGMHLAYDHPTGTVMSKPGPLTAGCGFFKAVITGKGGHAALPELAIDPIIAASASIVSLQHLVSRETNPLDSQVVTVTTSSGGDAFNVIPDSVTISGTFRAFSNESFYRLKQRIEEIIVGQSLVQRCAATVEFLEKEYPFIPPTVNNQIMHDHVCKVAADLVGSHNLKIATPLMAGEDFAFYTEVIPADFFLFGMKNETCGSIHAPHTSLFTVDENVLPLGAAMHAAIAERYLNEGKSRPSQFSVADTSIL

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
123			50	50	1.0
156			20	80	0.995493
157			20	80	0.995493
158		80	20		0.995493
159		80	20		0.995493
332		60		40	1.0
389		40	60		1.0
393		40		60	1.0
397		40		60	1.0
398		40		60	1.0
404			25	75	0.996473
405		25	75		0.996473
406	50		50		1.0
407			50	50	1.0
408	75		25		0.996473
409	25			75	0.996473
410			25	75	0.996473
412	25	75			0.996473
413			25	75	0.996473
415	50			25	0.995533
416	25		50	25	0.995533
494		50		50	1.0
576	75		25		0.996473
587	20		80		0.995493
588		80		20	0.995493
589			20	80	0.995493
658	14		85		0.993533
660			85	14	0.993533
732	85		14		0.993533
812	20		80		0.995493
815	80			20	0.995493
816			80	20	0.995493
819		75		25	0.996473
820			75	25	0.996473
1031		14		85	0.993533
1231		20		80	0.995493
1234		80		20	0.995493
1246	85			14	0.993533
1247	85		14		0.993533
1248			14	85	0.993533
1310	85			14	0.993533
1627	97		2		0.975753
1657		3		96	0.983282
1789		38		61	1.0
1928		87		3	1.0
1942	4	52			1.0
1945	90			10	0.90298
1947	66		33		1.0
2026	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain