SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6865

Length: 1569 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6865

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor n=1 Tax=Lycoris longituba RepID=D6MKH0_9ASPA	-	-	9.99967e-42	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	cAMP response element binding (CREB) protein	IPR001630	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G11260.1	HY5, TED 5 Basic-leucine zipper (bZIP) transcription factor family protein chr5:3593583-3594800 REVERSE LENGTH=168	9.80909e-45	63%
RefSeq	Arabidopsis thaliana	NP_568246.1	transcription factor HY5 [Arabidopsis thaliana]	1.96182e-44	63%
RefSeq	Populus trichocarpa	XP_002324289.1	predicted protein [Populus trichocarpa]	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTI7

Fln msg:

Fln protein: MQDTAASTSTQHQSTSEKSSSSAAPAPFRQAKDAIESDDDIRRVPEMGGMQAGPSTCVPMRLDNPQPSTGVVAHRKRGRAPADKEHKRLKRLLRNRVSAQQARERKKAYLNDLEIRVKEIEHKNSELEERLSTLQNENHMLRQILKNTTMKKKGSGNSGAET*

Protein Length: 164

Fln nts: AACATCCATATTCAATTAATGAGTGGATTACTCTGGTTGCTAATCCTACCCACCGTAACTTCTTGACCTCAGAAGATAGCAATTGCATTCCCCTCCAAGTCGGAGAAGGAAAAAGTTGATTATTTAGTGTTGAAGTTGGTCAGCTCTGTGAAGGTTGGGCTGTGAACTGTGAAATCTATTAAAGTTCATGGATAGGTGATCTTAGAATTTGAAACGTAGTGTTCTGGATTGAGAGATCAGTTAAATATGGTTTGATGGGTGCAGTTGGAAGCACAGAGATCTGACGTGAAAATAGAGATCTGATTTGTTTAGTAAACCAATGGGTCTCCTGCAGCATTTGTGAAGAAGGTGAAGAGAGAGAGGTCTTTTTTACATCAACTGGTGACAGCCCTGGTGCTCTTATGAACACAACAGAAGCAGAGTTTTAGTAGTTGAGATTGGTGAAGAAAATATATGGGGAAGTTGGATATATTGTGAGTGTTAGTTGACGGGTGCTGCTCGCAAAAGAAGAGAGTTTCCGTGGCATTAATGCTTTTCAGGGACGGTTTGTATGAAATTTGAATAGAGGAATAACAGAGTTTGGGGATATATCAGA_-_ATGCAGGACACTGCTGCTTCCACATCTACACAACATCAGTCAACAAGTGAAAAATCTTCAAGTTCAGCGGCTCCAGCCCCATTTAGACAAGCCAAAGATGCAATTGAGAGCGATGATGATATCAGGAGGGTTCCTGAAATGGGAGGAATGCAAGCAGGTCCATCTACGTGTGTGCCTATGAGGTTAGACAATCCCCAACCTAGCACAGGCGTTGTTGCCCACAGGAAGAGAGGGAGAGCCCCTGCAGACAAGGAACACAAGCGTCTCAAAAGATTGCTTAGGAACAGAGTGTCTGCCCAACAGGCACGAGAAAGAAAGAAGGCATACTTAAATGATTTAGAAATAAGGGTCAAGGAGATTGAGCACAAGAACTCAGAGTTAGAGGAAAGGCTTTCCACTCTGCAGAATGAAAATCATATGCTTAGACAGATATTAAAGAATACAACAATGAAGAAAAAGGGATCTGGTAACTCAGGAGCAGAAACCTAA___GTTGTATAAGGATCTGGTAACTCAGGAGCAGAAAACTAAGTTGTATCAGGATCTGATAACTCAGAAGCAGAAACCTAAGTTGTATCAGGATCTGGCAACTCAGGAGCAAAAACCTAAATTGGAGCAGGGTACTGGATATGTATACTTATCTTAAGGTGCATTTATTATAGATTTGTGAGCACCCTATAGTGCGTGCTCTCTCCTCTCTGTCATTAGTGACATTTTCATGGGCCTTATTTCACACACAAGAGATTTTAACAGTCAACATAGATCACAAAGTTTTAGTTAGAACATTAGTAGTACATAATTAATAAACAATTTTACAACAGTTCCAGAGATATTATTCTCTGGTTTTAGAGATCAAGAAGAAAGACTAGTATGAGGATGTCCTGGTACACTTATAATCATTTGTTTTAACCTCGCTGTCTCTGTCCATATGAACTTCACTTAAAAGATGATCAGTAAAGCTGAGATTATTTCATGTA

Fln Alignment:

Contig6865___PAPFRQAKDAIESDDDIRRVPEMGGMQAGPSTCVPMRLDNPQPSTGVVAHRKRGRAPADKEHKRLKRLLRNRVSAQQARERKKAYLNDLEIRVKEIEHKNSELEERLSTLQNENHMLRQILKNTTMKKKGSGNSGAET
A9NTI7______________PAQFRLAKDAIESDDDIRRVPEMGGMQAGPSTCLPMRLDNPQPTTGVVAHKKRGRAPADKEHKRLKRLLRNRVSAQQARERKKAYLSDLETRVKEIEHKNSELEERLSTLQNENQMLRQILKNTTMKKKGSGNSGAET

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
350			80	20	0.995493
491	14		85		0.993533
636		12		87	0.992554
873	25	75			0.996473
875			25	75	0.996473
876	75		25		0.996473
947	33	33		33	0.997753
948	66	33			0.997452
950			66	33	0.997452
951			66	33	0.997452
1141	33		66		1.0
1181		33		66	1.0
1312	66			33	1.0
1318	33	66			1.0
1361	57		42		1.0
1364	28		71		1.0
1376	60		40		1.0
1511		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain