SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6863

Length: 2556 nt

UniGene Fasta

>sp_v3.0_unigene6863
ATGGGGAACGCCGGATATTTTTGAAAAACAGCTTTTATTACTTTCTGACCCGCCTCGCCTCCCGGACTGTAACTCCGGCGACGATATTCCCGTTTCACCGACGGCACCTCACTAGCTTCCACCGTCGAGAACGCAGCAGCGAGCAGCGCGAGCTCTAACTGCCGTTGGCACGCGAGCCATGAAGTAAGGTTGGCCCGAAATCGTCCCTCATTTCAAATCTACCGAAGCTCAACAACGACAAACAACGACAGAACAGAACAACAGAGAAGGCCATGGCAGAGGTCATGTCATCCTCGCCGCTCCACTATCGCTCAGATGAGTCCCTCACGGCTGCTGATTTCGAAGATGCCACCACTGTTGCAGGAACTTCGATCTTCTCGGCAAGCGATTTCATGACGGCTGGAGATTCTTCTTTCGATGAAACCCCAGCCTCTGAGATAGCGAATCCGTGTAATGACGGCAAAGTTTCTGTCAAGAAATCCAGAAACTGCATATGTCAGAGGAACGACGCCGTTGGCATGAAGATTTGCAAAAATGAGCACAATAATGAGAGCAATAACAGTAGTAATGAACAGTTATCTGTTCTAGCAGTTCTCTTAACGACATTTAGGCGATCTTTAGTTGCTTGCCGAGCAAACCGAGAAGAACCTTCGAACATGGAGATAAGTTGGCCGACAAATGTAAGACATGTTGCGCATGTAACTTTCGACCGTTTTAATGGCTTCCTGGGGTTGCCAGTCGAGTTCGAACTCGAGATCCCCAGAAGAGTTCCCAGTGCCAGTGCAAGTGTATTTGGGGTCTCTGCAGAGTCAATGCAGTGTACATATGATTCAAAAGGAAATAGTGTGCCCACTATTCTTTTGCTTATGCAGGAGCGATTGTATTCTCAGGGAGGTCTTAAGGCTGAAGGCATATTCAGAATAAATGCAGAAAATAGTCAAGAGGAGCATGTACGAGACCAGCTGAATAAGGGGATTGTGCCAAATGATATAGATGTTCACTGTTTGGCAGGCTTGATAAAGGCATGGTTTAGGGAGCTGCCTACGGGAGTGCTGGACTCACTCACCCCTGAGCAAGTACTTCAGTGCAATGCAGAAGAAGAGTGTGTTGAACTTGTCAAGCTTCTTCCTCCAACACAACTAGCCCTCTTAAATTGGGCAATTGATCTAATGACAGATGTTGTACAAGAAGAGAAGCACAACAAAATGAATGCAAGGAACATTGCAATGGTCTTTGCACCAAATATGACGCAAATGTCAGATCCCTTGACTGCCCTTATGCATGCTGTTCAAGTGATGAATTTCCTCAAGACCTTAATTCTCAAATCATTGAGGGAACGTGAAGAGATATCGTTAGGTCACTGGCCAACTTATTGTGCAGATTCACGTGATGATGACGGCTATGACAGTACAACACAGACATTGGGCAATTGTGAAGCAAAGTACAGCACAGATGATGAACGCACAAGTGGTAGCGGTGAGTTTCTCATGGATGGGTATTCCCGCAGTACTGAAGATGATATCGAGGATTCACGTGATTCAGTCAATTACATTGAGGAAGATTTTGTGATTCATTTTGGCGAGAAGGATACCACAGATGATGATGAGCTTTCTGGTGATAGCAGAGCTGGTGATTTTAGTCCAAGCAGTGCAGATGTTGCAGTGAGGGAAAATATAGGAGCAACAATACTAGAAAAAATTAACAAAAGTGATGGTTTTCAATTTGGGAAAGGCCCTCGCATGTTTCATTCAGAAGGAGATCAGGATTACGCTGGTACGAGTGAAGTGGATTCTGACAAAATTTATGGGATTTTCAGTGATCGGAAAACAAAAAATGTTGTGGAGGATACCAAGGGAGATGTAAAGGACCATGCACAGTGCATGATTCAGATGAACCATTCTGCAGTGAAGTCAAGAGGAAGAAGGGTTCTAAGTCCTATTGATCAGCAAATAGAAAGAGTGGAAGCATGGTGACGAGTTTTATTCTAATCTTCTGTTGTTTTGCCAGATTTTTTCTGCTTGTGCAGAGACTGATTTGTGGGTGGAATTTTGTGGGGAGATGGTTTTGAAGACGTTTTAATTTGTGGGTTGTCTGTTGACTCTCTTTAAATTATTCAAGATCAGTATTCCTTGGCCTGGGTTTTGACTTTTGTAGACCTTGTAAATTATCTGACCACAAGTGTGTTTAGGTGCATCATAGCCTTGCATGGATGTCGACATTGCTAGACTTCAAAAATATTATCTAGGGACGTGATTTTGTTATACATAGCGTTTGGGTTAACCCGGGGCTTGCTATATTGTGATCGTTTTTGAGGTGTTAAAAGTTCTTTAACATCTCGTGATTTTACCAGCTGATTTCAAGAATTTGTATTTCTACATCTTCATGTAAGAAATATTGAACTCATGTTTTATCTACAGGGCTTTGGAAGGACCATTTCTTCTCATTAAGTGTCACGTATACATCTTTATGAGTGCTCCTAACTCATGATTATAACATATTGTTTTGTTTTATGAGGTTTTGTTTTTTTCTTCTTTCTCGATTCGGCAAAGGTACATT

Ace file of the UniGene sp_v3.0_unigene6863

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gtpase activating protein, putative n=1 Tax=Ricinus communis RepID=B9SCV2_RICCO	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	76%
Sma3	Putative rac GTPase activating protein	-	-	4.353e-19	-

Source	Gene names
Sma3	AT4g03100; At1g08340; At2g27440; At2g46710; At3g11490; At5g22400; F24K9.16; F4C21.2; GSVIVT00021595001; GSVIVT00023609001; GSVIVT00026140001; GSVIVT00037335001; H0404F02.3; LOC_Os11g05540; LOC_Os12g34840; MtrDRAFT_AC150442g3v2; OSJNBa0020J04.11; Os01g0967

Source	GOs	Term	Type	e value	Identity
Sma3	intracellular	GO:0005622	Cellular Component	0.0	-
Sma3	signal transduction	GO:0007165	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	0.0	-
Sma3	Rho GTPase-activating protein domain	IPR000198	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain chr5:7423050-7425335 REVERSE LENGTH=466	62%
RefSeq	Arabidopsis thaliana	NP_197632.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002321041.1	predicted protein, partial [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HHF3

Fln msg: your sequence is longer than subject: 567 - 479

Fln protein: MAEVMSSSPLHYRSDESLTAADFEDATTVAGTSIFSASDFMTAGDSSFDETPASEIANPCNDGKVSVKKSRNCICQRNDAVGMKICKNEHNNESNNSSNEQLSVLAVLLTTFRRSLVACRANREEPSNMEISWPTNVRHVAHVTFDRFNGFLGLPVEFELEIPRRVPSASASVFGVSAESMQCTYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINAENSQEEHVRDQLNKGIVPNDIDVHCLAGLIKAWFRELPTGVLDSLTPEQVLQCNAEEECVELVKLLPPTQLALLNWAIDLMTDVVQEEKHNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILKSLREREEISLGHWPTYCADSRDDDGYDSTTQTLGNCEAKYSTDDERTSGSGEFLMDGYSRSTEDDIEDSRDSVNYIEEDFVIHFGEKDTTDDDELSGDSRAGDFSPSSADVAVRENIGATILEKINKSDGFQFGKGPRMFHSEGDQDYAGTSEVDSDKIYGIFSDRKTKNVVEDTKGDVKDHAQCMIQMNHSAVKSRGRRVLSPIDQQIERVEAW*

Protein Length: 568

Fln nts: ATGGGGAACGCCGGATATTTTTGAAAAACAGCTTTTATTACTTTCTGACCCGCCTCGCCTCCCGGACTGTAACTCCGGCGACGATATTCCCGTTTCACCGACGGCACCTCACTAGCTTCCACCGTCGAGAACGCAGCAGCGAGCAGCGCGAGCTCTAACTGCCGTTGGCACGCGAGCCATGAAGTAAGGTTGGCCCGAAATCGTCCCTCATTTCAAATCTACCGAAGCTCAACAACGACAAACAACGACAGAACAGAACAACAGAGAAGGCC_-_ATGGCAGAGGTCATGTCATCCTCGCCGCTCCACTATCGCTCAGATGAGTCCCTCACGGCTGCTGATTTCGAAGATGCCACCACTGTTGCAGGAACTTCGATCTTCTCGGCAAGCGATTTCATGACGGCTGGAGATTCTTCTTTCGATGAAACCCCAGCCTCTGAGATAGCGAATCCGTGTAATGACGGCAAAGTTTCTGTCAAGAAATCCAGAAACTGCATATGTCAGAGGAACGACGCCGTTGGCATGAAGATTTGCAAAAATGAGCACAATAATGAGAGCAATAACAGTAGTAATGAACAGTTATCTGTTCTAGCAGTTCTCTTAACGACATTTAGGCGATCTTTAGTTGCTTGCCGAGCAAACCGAGAAGAACCTTCGAACATGGAGATAAGTTGGCCGACAAATGTAAGACATGTTGCGCATGTAACTTTCGACCGTTTTAATGGCTTCCTGGGGTTGCCAGTCGAGTTCGAACTCGAGATCCCCAGAAGAGTTCCCAGTGCCAGTGCAAGTGTATTTGGGGTCTCTGCAGAGTCAATGCAGTGTACATATGATTCAAAAGGAAATAGTGTGCCCACTATTCTTTTGCTTATGCAGGAGCGATTGTATTCTCAGGGAGGTCTTAAGGCTGAAGGCATATTCAGAATAAATGCAGAAAATAGTCAAGAGGAGCATGTACGAGACCAGCTGAATAAGGGGATTGTGCCAAATGATATAGATGTTCACTGTTTGGCAGGCTTGATAAAGGCATGGTTTAGGGAGCTGCCTACGGGAGTGCTGGACTCACTCACCCCTGAGCAAGTACTTCAGTGCAATGCAGAAGAAGAGTGTGTTGAACTTGTCAAGCTTCTTCCTCCAACACAACTAGCCCTCTTAAATTGGGCAATTGATCTAATGACAGATGTTGTACAAGAAGAGAAGCACAACAAAATGAATGCAAGGAACATTGCAATGGTCTTTGCACCAAATATGACGCAAATGTCAGATCCCTTGACTGCCCTTATGCATGCTGTTCAAGTGATGAATTTCCTCAAGACCTTAATTCTCAAATCATTGAGGGAACGTGAAGAGATATCGTTAGGTCACTGGCCAACTTATTGTGCAGATTCACGTGATGATGACGGCTATGACAGTACAACACAGACATTGGGCAATTGTGAAGCAAAGTACAGCACAGATGATGAACGCACAAGTGGTAGCGGTGAGTTTCTCATGGATGGGTATTCCCGCAGTACTGAAGATGATATCGAGGATTCACGTGATTCAGTCAATTACATTGAGGAAGATTTTGTGATTCATTTTGGCGAGAAGGATACCACAGATGATGATGAGCTTTCTGGTGATAGCAGAGCTGGTGATTTTAGTCCAAGCAGTGCAGATGTTGCAGTGAGGGAAAATATAGGAGCAACAATACTAGAAAAAATTAACAAAAGTGATGGTTTTCAATTTGGGAAAGGCCCTCGCATGTTTCATTCAGAAGGAGATCAGGATTACGCTGGTACGAGTGAAGTGGATTCTGACAAAATTTATGGGATTTTCAGTGATCGGAAAACAAAAAATGTTGTGGAGGATACCAAGGGAGATGTAAAGGACCATGCACAGTGCATGATTCAGATGAACCATTCTGCAGTGAAGTCAAGAGGAAGAAGGGTTCTAAGTCCTATTGATCAGCAAATAGAAAGAGTGGAAGCATGGTGA___CGAGTTTTATTCTAATCTTCTGTTGTTTTGCCAGATTTTTTCTGCTTGTGCAGAGACTGATTTGTGGGTGGAATTTTGTGGGGAGATGGTTTTGAAGACGTTTTAATTTGTGGGTTGTCTGTTGACTCTCTTTAAATTATTCAAGATCAGTATTCCTTGGCCTGGGTTTTGACTTTTGTAGACCTTGTAAATTATCTGACCACAAGTGTGTTTAGGTGCATCATAGCCTTGCATGGATGTCGACATTGCTAGACTTCAAAAATATTATCTAGGGACGTGATTTTGTTATACATAGCGTTTGGGTTAACCCGGGGCTTGCTATATTGTGATCGTTTTTGAGGTGTTAAAAGTTCTTTAACATCTCGTGATTTTACCAGCTGATTTCAAGAATTTGTATTTCTACATCTTCATGTAAGAAATATTGAACTCATGTTTTATCTACAGGGCTTTGGAAGGACCATTTCTTCTCATTAAGTGTCACGTATACATCTTTATGAGTGCTCCTAACTCATGATTATAACATATTGTTTTGTTTTATGAGGTTTTGTTTTTTTCTTCTTTCTCGATTCGGCAAAGGTACATT

Fln Alignment:

Contig6863___QLSVLAVLLTTFRRSLVACRANREEPSNMEISWPTNVRHVAHVTFDRFNGFLGLPVEFELEIPRRVPSASASVFGVSAESMQCTYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINAENSQEEHVRDQLNKGIVPNDIDVHCLAGLIKAWFRELPTGVLDSLTPEQVLQCNAEEECVELVKLLPPTQLALLNWAIDLMTDVVQEEKHNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILKSLREREEISLGHWPTYCADSRDDDGYDSTTQ
F6HHF3______________QLSLLALLVTLFRKSLVVCKTDREELCAMEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASANVFGVSTESMQLSFDSRGNSVPTILLLMQRRLYLQGGLQAEGIFRINAENSQEEYVREQLNRGVVPEGIDLHCLAGLIKAWFRELPTGVLDSLSPEQVMQCQAEEECAELVRLLPPTEAALLDWAINLMADVVQEEHLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLIIKTLREREDSMVEPAPTSSLEPFDENGHQSPSQ

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
411	14			85	0.993533
412	14	85			0.993533
414			14	85	0.993533
619		10		90	0.90298
685			88	11	0.923564
686	88			11	0.923564
688	87		12		0.992554
696	14	85			0.993533
776		10		90	0.90298
783	10		90		0.90298
787			88	11	0.923564
1014		25		75	0.996473
2179			92	7	0.999602
2264		90		9	0.999842
2349	90		9		0.999872
2437		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain