SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6862

Length: 1744 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6862

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phosphomethylpyrimidine kinase [Arabidopsis thaliana]	-	-	0.0	66%
FL-Next	tr=Thiamine-phosphate pyrophosphorylase; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	68%

Source	Gene names
Sma3	At1g22940; F19G10.10; GSVIVT00035470001; LOC_Os12g09000; MICPUCDRAFT_52893; OSTLU_17535; Os12g0192500; OsI_37743; OsJ_35490; PHYPADRAFT_140095; POPTRDRAFT_799543; RCOM_0321500; bth1;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	thiamine-phosphate diphosphorylase activity	GO:0004789	Molecular Function	-
Sma3	hydroxymethylpyrimidine kinase activity	GO:0008902	Molecular Function	-
Sma3	phosphomethylpyrimidine kinase activity	GO:0008972	Molecular Function	-
Sma3	thiamine biosynthetic process	GO:0009228	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Thiamine monophosphate synthase	IPR003733	-	-
Sma3	Phosphomethylpyrimidine kinase type-2	IPR004399	-	-
Sma3	Phosphomethylpyrimidine kinase type-1	IPR013749	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G22940.1	TH1, TH-1, THIE thiamin biosynthesis protein, putative chr1:8122384-8124908 FORWARD LENGTH=522	66%
RefSeq	Arabidopsis thaliana	NP_173707.2	thiamine-phosphate pyrophosphorylase [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002304056.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: G7INQ6

Fln msg: your sequence is shorter than subject: 496 - 576

Fln protein: SERSKVPHVLTVAGSDSGAGAGIQADMKVCGALGVYCSTVITAVTAQNTVGVQGVHLVPDSFVYEQLRSVLSDMEVNVVKTGMLPSTEIIRVLCRSLREYPVQALVVDPVMISTSGDVLASPTILDALRQELLPLSDIVTPNLKEASALVGGESLETIADMRAAAKSIHKLGPRYVLIKGGHLETAGSVIDILYDGETYHEIEGPRVETRNTHGTGCSLASCIAAELAKGAQMLPAVLASKRFVEEALESSRDFFIGNGPQGPFNHFFKLIDTETSPTKRRFKPSDLFLYAVTDSGMNKKWGRSISEAVRAAIEGGATIIQLREKEAETKDILNAAEECLKVARSYGVPLLINDHLDVALACNADGVHLGQSDMPVKVARALLGPNKIIGASCKTPEQALKAWKEGADYIGSGGVYPTNTKKNNQTIGLSGLQSVCESSPLPVVAIGGINIENVHELMEMSLPNLKGVAVVSCLFDSENISHEAHKLHSVLAKYV*

Protein Length: 497

Fln nts: AGTGAGAGAAGTAAGGTTCCACATGTGCTCACTGTTGCTGGTTCAGATTCAGGAGCAGGTGCAGGAATCCAAGCTGATATGAAGGTGTGTGGTGCCCTTGGTGTTTACTGTTCCACTGTCATAACTGCTGTCACAGCTCAAAACACTGTTGGAGTACAAGGTGTTCATCTAGTGCCAGACAGTTTTGTTTATGAACAGCTGAGATCTGTGTTATCCGACATGGAAGTCAATGTGGTAAAGACAGGTATGCTCCCTTCTACAGAGATTATTCGAGTCTTATGCAGAAGCCTGAGGGAGTATCCAGTCCAAGCATTAGTGGTTGACCCAGTTATGATTTCAACAAGTGGAGATGTGTTGGCAAGTCCTACTATTCTTGATGCACTTAGGCAAGAGCTTCTACCATTGTCAGATATTGTCACTCCTAATTTGAAAGAAGCATCAGCTTTAGTAGGTGGAGAGTCGCTGGAAACTATAGCTGATATGCGTGCAGCTGCAAAATCCATACACAAGCTGGGACCAAGGTATGTTCTCATAAAGGGAGGTCACCTAGAGACCGCTGGATCTGTCATTGACATTCTTTACGATGGAGAAACTTATCACGAGATTGAAGGACCACGTGTTGAGACTCGTAATACCCATGGAACGGGGTGTTCTTTGGCGTCATGCATTGCGGCTGAACTTGCAAAGGGAGCTCAGATGCTTCCAGCTGTCCTGGCATCAAAACGTTTTGTTGAAGAAGCTCTTGAATCCAGTCGAGATTTTTTTATTGGAAATGGACCTCAAGGTCCTTTCAATCACTTCTTCAAGTTGATTGATACGGAAACCAGCCCAACTAAAAGAAGATTCAAGCCAAGTGATCTCTTTTTGTATGCCGTAACGGATTCTGGAATGAATAAGAAATGGGGCCGTTCTATCTCGGAGGCTGTCAGGGCTGCTATTGAAGGGGGAGCAACTATCATACAGCTGAGAGAGAAAGAGGCTGAAACCAAAGACATCCTCAATGCAGCCGAAGAATGTTTGAAAGTTGCACGGTCATATGGAGTACCTCTGTTGATAAATGACCATTTAGATGTGGCACTTGCCTGCAATGCAGATGGAGTACACCTTGGGCAATCAGATATGCCAGTTAAAGTAGCTCGAGCTCTTCTTGGACCTAACAAAATCATCGGAGCATCATGCAAAACTCCAGAGCAAGCTCTAAAAGCTTGGAAGGAGGGTGCAGATTACATTGGGTCTGGTGGTGTTTATCCAACTAATACAAAGAAAAATAACCAAACTATTGGGTTGAGCGGTCTGCAAAGTGTCTGCGAGAGTAGTCCATTGCCCGTCGTTGCTATTGGAGGCATTAATATTGAAAATGTACATGAGCTCATGGAAATGTCTCTACCCAATTTGAAGGGTGTGGCAGTTGTTTCTTGTCTGTTTGACAGCGAAAACATCTCTCATGAAGCTCACAAACTGCATTCTGTGTTAGCAAAGTATGTTTAG___AGTCGAAAGTTGAAACTGATTGGTTAAGATTCCAGGTGTCTTTGAAACTGATTGGTTAAGATTCCACGTGTCTATCTCCCTTCATGGGTGCCTGGATTCTAGAAAATAACATTTCGTTTGTTGAAATCTTTGTAAAAGAAAAATAAGCTGGCCCCTTGTCAGCATTCTCTGACCAGTGCCTTCTAGGGCTTTCATTCTCTTGGTCTTCATTGAAAAGGAATGAGATGTTGTGTGGTGCCCGTGGCCACTTATTTTG

Fln Alignment:

Contig6862___SERSKVPHVLTVAGSDSGAGAGIQADMKVCGALGVYCSTVITAVTAQNTVGVQGVHLVPDSFVYEQLRSVLSDMEVNVVKTGMLPSTEIIRVLCRSLREYPVQALVVDPVMISTSGDVLASPTILDALRQELLPLSDIVTPNLKEASALVGGESLETIADMRAAAKSIHKLGPRYVLIKGGHLETAGSVIDILYDGETYHEIEGPRVETRNTHGTGCSLASCIAAELAKGAQMLPAVLASKRFVEEALESSRDFFIGNGPQGPFNHFFKLID-TETSPTKRRFKPSDLFLYAVTDSGMNKKWGRSISEAVRAAIEGGATIIQLREKEAETKDILNAAEECLKVARSYGVPLLINDHLDVALACNADGVHLGQSDMPVKVARALLGPNKIIGASCKTPEQALKAWKEGADYIGSGGVYPTNTKKNNQTIGLSGLQSVCESSPLPVVAIGGINIENVHELMEMSLPNLKGVAVVSCLFDSENISHEAHKLHSVLAK
G7INQ6______________SELNKIPHVLTVAGSDSGAGAGIQADLKTCSARRVYCSTVITAVTAQNTLGVQGVNIVPHDFVQHQLNSVLSDINVDVVKTGMLPSLSVLKVLCQSLRKFPVKALVVDPVMISTSGDILAGPSVLDGFREELLPMADIVTPNVKEASALLGDLPIKTVSDMRTAAKLIHDLGPRSVLVKGGDLPNSSEAIDIFYDGQEFYELSSPRVNTRNTHGTGCTMASCIAAELAKGSSMLSAVKIAKRFVEAALEYSRDLLIGNGVQGPFDHLLALKNINQSSYRQDRFNPNDLFLYAVTDSGMNRKWGRSIAEAVKAAVEGGATIVQLREKDAETKDFVDAAKVCLKICRSYGVPLLINDRIDVALACDADGVHVGQSDMPARLARTILGPEKIIGVSCKTPEHAHQAWLDGADYIGSGGVYPTNTKENNRTIGLDGLKEVCKASKLPVVAIGGIGMSNARAVMELGVPSLKGVAVVSALFDRECILTETRNLQAVISE

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1251	85		14		0.993533
1276	85		14		0.993533
1334		88		11	0.923564
1352		11		88	0.923564
1382	16	83			0.999991
1416		23		76	1.0
1480		18		81	0.999994
1556		73	26		1.0
1653	77			22	0.999999
1658		75		25	1.0
1662	60			20	0.99255
1664		40	20	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain