SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6853

Length: 2586 nt

UniGene Fasta

>sp_v3.0_unigene6853
ATGGGGATCCCCTTAAACATAATTACAAGCAATAACAGGAAGCTAATCATAGGCTTCATTGTAGGCTCTGCTTGTGGTGTGTGTTGAAGGGAGCCTCAATTGGGTATTGCAGAGAACGCAATCAAAGCCCATAATACAGTAGGAGCCCCGCAGTGACGAGACCCCATTCTGGTATTTGAAGGATATTGTTTGTTCATCAGTGGAGTCCTGAATACAGGAGATATTTTGTGTTGGGGACTATTTGGGCATCGCAGGGATTGCATTTAAAGCAGACCAACTGTGTTTAAGAGGCCTATTTGGGCATTCAAAGCGAATGCATTGAGAGCCCAACATTGTCCTGTTTGGATACATTGAAGGATCTACAAGGGCGAGACTTTTGCAGTATCAGAGGCCTGTTGCAGCATTGCAAAGAATGTATTCAAAGCTCAAGACATTAGTGGACGTTTGAATAGAATATCAGGCCTTCTTGGGTATTGTGGGGAATGCATTGAGTGCTGAACATAACAATGGATCCTTGCTCATTTGTGAAGGTTTTGGTTGGAGGGCTGGCACTGAGGATCCCAGTTTCATCCAAGCCTACCAGAACAGGCGTCCATCCTACTACTTCTCCTTGCTTTTGTGAGATCAGGTTGCCCAATCTGCCTCCTCAGACTGTGGTAGTTCCCCTGATTTCCCCAAGGTCATCTGACCCAGATGTCCATAACATCTCAGCCAGCTTCCATCTTGAGCAGATTGAGCTGAAGAAGCTGTCTTCTTCCTGTTTTGGGTCCTCGAAACCATGCTTGGAGATTGTAGTATATGCCGGAAGGCAGGGGTCGACCTGTGGTGTGTCTTTGGGGAAGCTTTTGGGGAAATTCAGAGTCCCTCTGGACCTTGAGGGTGCCCATGAGAAGCCCATTGTTTTCCACAGTGGATGGGTTTCAATTGGAAAATCTAAGCTGGATGGTGCACAGCTGCATTTGAATGTCAGAGCACAGCCAGACCTTAGGTATGTGTTTCAATTTGATGGGGAAATCGGATCAAGTCCTCAGGTTTTTCAGATTCAAGGCAATATCAGACAGCCAATTTTCAGCTGCAAGTTCAGTTCTGACCGAAGTTCTAGATCATGTTTAATGCAACATGATAGTAGCAACAAGAAACACTGGTTGTGTCCATTCGGAAACGTTCAAGACCGAGAACGAGGGAGGAGGGAACGCAAAGGATGGTTAGTAATGATTCACGATCTGTCTGGTTCCCCTGTAGCCGCTGCATCCATGGTCACACCCTTTGTTCCGTCACCTGGTTCTGATCGTGTAAGCCGCTCAAATCCTGGTGCCTGGCTCATTCTCAGACCTGACCACCGGGGTGAAGACAGCTGGAGACCATGGGGTCGCCTGGAAGCTTGGAGAGAACGAGGGAGCGGTGGTGGATTGGGGTGCAAATTTGAGCTTATGGCAGATGGTGGTGGTTTGGCTCGGATGGGCAGTGGGCTTCTGCTAGCAGAATCAATTATTAATGCTCAGAAGGGTGGCAAGTTTCTTATAGACAGTGGTCATGGCAAATCAGGCACACCTATATCTAACTCCCCTGCTTCAACCCCTCGTAGCAGTGGAGACTTTAGTTTCAGCATGTGGCCTTACCAATCCTACTGCGGCTTTGTGATGAGCTCGACCGTCCAAGGAGAAAGGAAGTGCAGTAAGCCTATGGTCCAGTTGGCAATGAGACATGTTACCTGCATGGAGGATGCTGCAGTGTTTGTAGCCTTGTCGGCAGCAGTGGATCTGAGCATGGATGCATGCCAGGTTTTTTCCAGAAAGTTGAAGAAACAATTATGCCGGAGGAATGACAGATTCTAGAGGAAGAACTATTTGTGATAGCCATAAACAAAAGCAGATCAAAGCATCAAACTGTCCATGGGCCAAGTTGTGAGAACATTGGTATCCTCATTGTGGGGGTCATATGGTAACCTCATAGAATTGTATACATCTTAGATGTATCAGAGGCATGTTTATTGAGTCTAGCATTTGGAGATTTCTGTGCCACAAAGAGAAGCAGATTGCTCATTTGCTTGGCTCTGAGGTGCAAGGTATCTCAGATCACGAGTCTGCAATTTTCAAAGATGAAGTACTACTTGTCACATTTCAGTGATTTTTGATCATAGCTTGGGATCATCAGAGCATTGATTAGTTTGCAATTTGCAAGATGTGTAGTTTGTAGGATATTTTTTCGGACTGACTTGAGCATCTGAAGAATGGAAATCAGATATAACAAACCGTGCTATCAAATTTTAGGCCATCCAAAATATTATGTCGTTGTGATATATGAGGATATATTTCTGTAATACATTATAGGCTCTTATTTTCCCTCACAGAAAAGTTTGAGCTGTTTGTGCTTTAACAACTAACAGAGTGTTACATTGCAAATTGCAAAGGTTGAAGAAAGAAACTCTTATCATTGCAAATGGAAAAGATCGAAGAAATTTTTAGCAAATTGCAAAGATCGAAGAAAGAAACTCTTATCATTGCAAATGGAAAAGATCGAAGAAATTTTTATCATTTGCAAATTGAAAAGATTGAAGAAATATTTATCATTACTCTTTTTTCTAAG

Ace file of the UniGene sp_v3.0_unigene6853

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1005 domain containing protein	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	58%

Source	Gene names
Sma3	At1g10020; At1g50040; At3g19680; At4g29310; At5g17640; F2J10.8; GSVIVT00015022001; GSVIVT00016640001; GSVIVT00022959001; GSVIVT00038592001; K10A8_120; LOC_Os03g56220; OJ1118_D07.19; OJ1449_C01.2; OJ9990_A01.119; OSJNBb0094O03.10; Os01g0740400; Os03g077300

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1005	IPR010410	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G10020.1	Protein of unknown function (DUF1005) chr1:3269939-3271732 REVERSE LENGTH=461	51%
RefSeq	Arabidopsis thaliana	NP_172473.1	uncharacterized protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002301131.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6H156

Fln msg:

Fln protein: MDPCSFVKVLVGGLALRIPVSSKPTRTGVHPTTSPCFCEIRLPNLPPQTVVVPLISPRSSDPDVHNISASFHLEQIELKKLSSSCFGSSKPCLEIVVYAGRQGSTCGVSLGKLLGKFRVPLDLEGAHEKPIVFHSGWVSIGKSKLDGAQLHLNVRAQPDLRYVFQFDGEIGSSPQVFQIQGNIRQPIFSCKFSSDRSSRSCLMQHDSSNKKHWLCPFGNVQDRERGRRERKGWLVMIHDLSGSPVAAASMVTPFVPSPGSDRVSRSNPGAWLILRPDHRGEDSWRPWGRLEAWRERGSGGGLGCKFELMADGGGLARMGSGLLLAESIINAQKGGKFLIDSGHGKSGTPISNSPASTPRSSGDFSFSMWPYQSYCGFVMSSTVQGERKCSKPMVQLAMRHVTCMEDAAVFVALSAAVDLSMDACQVFSRKLKKQLCRRNDRF*

Protein Length: 444

Fln nts: ATGGGGATCCCCTTAAACATAATTACAAGCAATAACAGGAAGCTAATCATAGGCTTCATTGTAGGCTCTGCTTGTGGTGTGTGTTGAAGGGAGCCTCAATTGGGTATTGCAGAGAACGCAATCAAAGCCCATAATACAGTAGGAGCCCCGCAGTGACGAGACCCCATTCTGGTATTTGAAGGATATTGTTTGTTCATCAGTGGAGTCCTGAATACAGGAGATATTTTGTGTTGGGGACTATTTGGGCATCGCAGGGATTGCATTTAAAGCAGACCAACTGTGTTTAAGAGGCCTATTTGGGCATTCAAAGCGAATGCATTGAGAGCCCAACATTGTCCTGTTTGGATACATTGAAGGATCTACAAGGGCGAGACTTTTGCAGTATCAGAGGCCTGTTGCAGCATTGCAAAGAATGTATTCAAAGCTCAAGACATTAGTGGACGTTTGAATAGAATATCAGGCCTTCTTGGGTATTGTGGGGAATGCATTGAGTGCTGAACATAACA_-_ATGGATCCTTGCTCATTTGTGAAGGTTTTGGTTGGAGGGCTGGCACTGAGGATCCCAGTTTCATCCAAGCCTACCAGAACAGGCGTCCATCCTACTACTTCTCCTTGCTTTTGTGAGATCAGGTTGCCCAATCTGCCTCCTCAGACTGTGGTAGTTCCCCTGATTTCCCCAAGGTCATCTGACCCAGATGTCCATAACATCTCAGCCAGCTTCCATCTTGAGCAGATTGAGCTGAAGAAGCTGTCTTCTTCCTGTTTTGGGTCCTCGAAACCATGCTTGGAGATTGTAGTATATGCCGGAAGGCAGGGGTCGACCTGTGGTGTGTCTTTGGGGAAGCTTTTGGGGAAATTCAGAGTCCCTCTGGACCTTGAGGGTGCCCATGAGAAGCCCATTGTTTTCCACAGTGGATGGGTTTCAATTGGAAAATCTAAGCTGGATGGTGCACAGCTGCATTTGAATGTCAGAGCACAGCCAGACCTTAGGTATGTGTTTCAATTTGATGGGGAAATCGGATCAAGTCCTCAGGTTTTTCAGATTCAAGGCAATATCAGACAGCCAATTTTCAGCTGCAAGTTCAGTTCTGACCGAAGTTCTAGATCATGTTTAATGCAACATGATAGTAGCAACAAGAAACACTGGTTGTGTCCATTCGGAAACGTTCAAGACCGAGAACGAGGGAGGAGGGAACGCAAAGGATGGTTAGTAATGATTCACGATCTGTCTGGTTCCCCTGTAGCCGCTGCATCCATGGTCACACCCTTTGTTCCGTCACCTGGTTCTGATCGTGTAAGCCGCTCAAATCCTGGTGCCTGGCTCATTCTCAGACCTGACCACCGGGGTGAAGACAGCTGGAGACCATGGGGTCGCCTGGAAGCTTGGAGAGAACGAGGGAGCGGTGGTGGATTGGGGTGCAAATTTGAGCTTATGGCAGATGGTGGTGGTTTGGCTCGGATGGGCAGTGGGCTTCTGCTAGCAGAATCAATTATTAATGCTCAGAAGGGTGGCAAGTTTCTTATAGACAGTGGTCATGGCAAATCAGGCACACCTATATCTAACTCCCCTGCTTCAACCCCTCGTAGCAGTGGAGACTTTAGTTTCAGCATGTGGCCTTACCAATCCTACTGCGGCTTTGTGATGAGCTCGACCGTCCAAGGAGAAAGGAAGTGCAGTAAGCCTATGGTCCAGTTGGCAATGAGACATGTTACCTGCATGGAGGATGCTGCAGTGTTTGTAGCCTTGTCGGCAGCAGTGGATCTGAGCATGGATGCATGCCAGGTTTTTTCCAGAAAGTTGAAGAAACAATTATGCCGGAGGAATGACAGATTCTAG___AGGAAGAACTATTTGTGATAGCCATAAACAAAAGCAGATCAAAGCATCAAACTGTCCATGGGCCAAGTTGTGAGAACATTGGTATCCTCATTGTGGGGGTCATATGGTAACCTCATAGAATTGTATACATCTTAGATGTATCAGAGGCATGTTTATTGAGTCTAGCATTTGGAGATTTCTGTGCCACAAAGAGAAGCAGATTGCTCATTTGCTTGGCTCTGAGGTGCAAGGTATCTCAGATCACGAGTCTGCAATTTTCAAAGATGAAGTACTACTTGTCACATTTCAGTGATTTTTGATCATAGCTTGGGATCATCAGAGCATTGATTAGTTTGCAATTTGCAAGATGTGTAGTTTGTAGGATATTTTTTCGGACTGACTTGAGCATCTGAAGAATGGAAATCAGATATAACAAACCGTGCTATCAAATTTTAGGCCATCCAAAATATTATGTCGTTGTGATATATGAGGATATATTTCTGTAATACATTATAGGCTCTTATTTTCCCTCACAGAAAAGTTTGAGCTGTTTGTGCTTTAACAACTAACAGAGTGTTACATTGCAAATTGCAAAGGTTGAAGAAAGAAACTCTTATCATTGCAAATGGAAAAGATCGAAGAAATTTTTAGCAAATTGCAAAGATCGAAGAAAGAAACTCTTATCATTGCAAATGGAAAAGATCGAAGAAATTTTTATCATTTGCAAATTGAAAAGATTGAAGAAATATTTATCATTACTCTTTTTTCTAAG

Fln Alignment:

Contig6853___MDPCSFVKVLVGGLALRIPVSSKPTRTGVHPTTSPCFCEIRLPNLPPQTVVVPLISPRSSDPD--VHNISASFHLEQIELKKLSSSCFGSSKPCLEIVVYAGRQGSTCGVSLGKLLGKFRVPLDLEGAHEKPIVFHSGWVSIGK-SKLDGAQLHLNVRAQPDLRYVFQFDGEIGSSPQVFQIQGNIRQPIXXXXXXXXXXXXXXL----MQHDSSNKKHWLCPFGNVQDRERGRRERKGWLVMIHDLSGSPVAAASMVTPFVPSPGSDRVSRSNPGAWLILRPDHRGEDSWRPWGRLEAWRERGSGGGLGCKFELMAD-GGGLARMGSGLLLAESIINAQKGGKFLIDSGHGKSG--TPIS-NSPASTPRSSGDFSFSMWPYQSYCGFVMSSTVQGERKCSKPMVQLAMRHVTCMEDAAVFVALSAAVDLSMDACQVFSRKLKKQLCRRND
F6H156______________MDPCPFVRLLVGNLALKVPVASKPARSVVHPSSSPCFCKIKLKNFPLQTAVVPFIPPENQFPDGQVQTLAASFHLSKADLEKLAAKSIFAGKLCLKIAVYTGRRGTTCGVNSGRLLGRVTVPLDLAGTETRPCVFHNGWISVGKGTKGSSAQFHLNVKSEPDPRFVFQFDGEPECNPQVFQIQGSIRQPVFTCKFSFRNTGGPNQRSRSLQSETISSRTWLSSFGS--ERERPGRERKGWSITVHDLSGSPVAAASMVTPFVASPGSDRVSRSNPGSWLILRP---GDGTWKPWGRLEAWRERGSSDGLGYRFELIPDTNGGMG--AAGIVLSESTLGSNKGGKFVIDLGGGSNGRATPGSATSPACSPRSSGDFGYGLWPYCSYRGFVMSATVEGEGKCSKPSVEISVQHVNCTEDAAAFVALAAAVDLSMDACRLFSHKLRKELCQHQD

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1119			33	66	1.0
2067	90		10		0.999898

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain