SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6841

Length: 2918 nt

UniGene Fasta

>sp_v3.0_unigene6841
ATGGGCGGAGCATATTAAATGCCAGTTTTGTTTCACCGGCATACATGGGAAGTTTAATATGATTCCTTTGGTATATTTCGATTTCCATCCTGCTTTTAATTTTTCACTTTTACCTTTTTTCACAGACGACTCTGACGGGCGGAGGAACTCATTCTTCCCCCATTCGCAGCAGACCTCCTGGATGCCCGTTGCGAAAGCTTAAATCTCCGACTTAAGCTGCATCGCGAACCTATCCTCAGTTTCAGTTAAACCCTAGACAACCATTGCGGAAACCGCAGATCTTTTATACTTGAAAAAAATTGGACCTTACAGGATCCGATCGCCATGCGCGGAGCACCAGCCATGCCCGGAGCATCAACCAGGGAAAATAGCAGAAAAATGTTCGTGACCAACACTCCAGGAGCTGATTTGGCACTGACAAACTGTGCATATTGTTCTTCTTCTGATCTGCGAACCTTCATGGTTCCAGGATTCGGTCAGGCCTTGGCATCCATTGGATCTTCTATGGTTCTTACATTGCGTTTGCATGAAAGCATACAGGATGATTATATTGCTTTGAATGCTATTCAGCGGCGCCATGCTAGGCTTTCTACGGGGGATACTGTTTTAGTCAGTAGGTTTGTTCCACCGGAAAAAAAATTCAAGCTGGTCTTGTTAAGACTTGAACTGGAGTTTGTCAAAGCTAAGGGCAAAACTGAACAGCTTGATGCTGTCCTTCTTGGCAAGGAGCTTCAAAAAAGATTCTCGGATCAGGTTTTCTCTATGGGGCAGAGAGCTACATTTGAATACTGTGGAACAAATTACATCTTCACTGTGAATCAGACTATTGTGGAAGGACAAGGAGATAATGAAAATATAGAGAGAGGAATGCTGTCAAAAGAAACATATATTATCTTTGAGTCAGCCTCAAATTCTGGCATAAAGATAAAGAATCAACGTGAAGCGGCAAGCAGCAACATTTTCAAGCAGAAGGATTTCGACCTTCAAAAATTGGGCATCGGTGGTCTTGCTGAACAATTCCAGGACATATTTCGCAGAGCATTTGCATCTCGGGTTCTTCCTCCACATGTCACAAACAAGTTGGGTATCAAGCATGTTAAAGGAATGCTGCTTCATGGACCCCCTGGAACAGGGAAGACCCTTATTGCCCGTCAAATTGGAAAGATGCTCAATGGGAAAGAACCAAAGATTGTTAATGGACCTGAAGTCTTAAGCAAATATGTGGGAGAAACAGAAAAAAATGTTCGGGATCTTTTTGCTGATGCGGAGAATGATCAAAGGACTCATGGTGACCAAAGTGAATTGCATGTTATTATTTTCGATGAAATTGATGCTATTTGCAAGACTAGAGGATCGACCAGGGATGGAACTGGAGTACATGATGGGATTGTCAATCAACTCCTAACAAAGATAGATGGTGTCGAGTCTTTAAACAATGTGTTGCTTATAGGAATGACAAACAGGAAGGACCTTATTGATGAGGCTCTCCTCAGGCCAGGGCGTTTGGAAATTCAAATAGAGATTGGCCTTCCTGATGAAAAAGGGCGTCTAGAGATTTTTCGAATACACACTAGCAAAATGAAAGAAAATTCTTTTCTTGCTGCTGACGTGAACCTTGAAGAACTCGCTGCACGGACAAAAAATTTCAGTGGAGCTGAAATTGAAGGTGTAGTGAAAAGTGCAGTCTCTTTTGCCTTGAACAGGCAAATCAACCATGATGATCTTACTAAACCTTTAGATGAAGAGAATATAAAGGTCACCATGGATGATTTCTTATGTGCACTTCAAGAAGTAAAAGCGGCGTTTGGAGCAGCCACAGACAATCTCGAGAGATGCAGATTGAATGGTATGGTTGATTGTGGTGAGAGGCACAAACATATATTTGAGAGAGTAATGTTATTAGTAGAGCAAGTGAAATGGAGCAAAGGAAGTCCTCTCATGACTTGTCTTCTTGAAGGGCCTTCGGGCAGTGGTAAAACATCCATGGCAGCAACAGTTGGCATTGACAGCAACTTTCCATTTGTTAAAGTAGTATCTGCTGAATCAATGATTGGACTGAGTGAGAGCAGCAAATGTGCAGTTATAGTCAAGGTTTTTGAGGATGCATACAAGTCTCCATTGAGTATTATCATTCTTGATGATATTGAACGATTATTGGAGTTTGTGGTGATTGGGCCCCGTTTTTCAAACTTGATCTCACAGACATTGTTGGTGCTTCTCAAGAAAATCCCCCCTAAGGGAAGGAATCTGTTGGTTATTGGGACTACAAGTGAAGTAAATGTCCTTGAGTCTTTGGGTATTCGCAAGGCTTTTGGTATTTCATTTCATGTGCCAACATTGGGGCGTGCAGACACAAAGAAGGTTTTACAACGGCTATCTATGTTTGCAAAAGATGACCTTGATGCAGCAGTGGAAGCTATTGATGAGATACCAATCAAGAAGTTGTTTATGTTAGTGGAGATGGTGGCACAAGGCGAGAAAGGGAACAGTGCGGAAGCCATCTACTCTGGAAAGGAGAAAATAAACATTAATCATTTCTTTGATTGCCTTCGTTATCTTACTGGGAATGATGATTTAGATTAGTTCAAGCTATATCCCGGATTTTCTATTGCTCTCTCTTTTCCAAAACTAGCATCTCAGGAGTTGAAACACATTTGTTGGTTTCTATACCCAATGTTCTGTAGAATGCAGTTCAACTTTGTTAACGCATTTCTATGAGCTGCAGGAAGCCTTGTTGTTTGATTATATGAACTGCTGTCTTTTTGATGTGTTCCTGCAGTCTGTTTTGACAGATTGCGACATGCTTTGTCTGTTTACCAAAAAGTTATTCATTTTTATTAATTCTCCAAAACGATTTTGCTATTAGAGAAGCCATCTTGTTAATAGAATCAGAATGTAAATGATAAAAGTTACAAGAC

Ace file of the UniGene sp_v3.0_unigene6841

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	N-ethylmaleimide sensitive fusion protein [Nicotiana tabacum]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Sma3	Predicted protein	-	-	-

Source	Gene names
Sma3	POPTRDRAFT_831118;

Source	InterPros	Term	Type	Identity
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	CDC48, domain 2	IPR004201	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G04910.1	NSF AAA-type ATPase family protein chr4:2489696-2495666 REVERSE LENGTH=742	74%
RefSeq	Arabidopsis thaliana	NP_192400.2	vesicle-fusing ATPase [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002305796.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQW3

Fln msg: your sequence is longer than subject: 753 - 288

Fln protein: MRGAPAMPGASTRENSRKMFVTNTPGADLALTNCAYCSSSDLRTFMVPGFGQALASIGSSMVLTLRLHESIQDDYIALNAIQRRHARLSTGDTVLVSRFVPPEKKFKLVLLRLELEFVKAKGKTEQLDAVLLGKELQKRFSDQVFSMGQRATFEYCGTNYIFTVNQTIVEGQGDNENIERGMLSKETYIIFESASNSGIKIKNQREAASSNIFKQKDFDLQKLGIGGLAEQFQDIFRRAFASRVLPPHVTNKLGIKHVKGMLLHGPPGTGKTLIARQIGKMLNGKEPKIVNGPEVLSKYVGETEKNVRDLFADAENDQRTHGDQSELHVIIFDEIDAICKTRGSTRDGTGVHDGIVNQLLTKIDGVESLNNVLLIGMTNRKDLIDEALLRPGRLEIQIEIGLPDEKGRLEIFRIHTSKMKENSFLAADVNLEELAARTKNFSGAEIEGVVKSAVSFALNRQINHDDLTKPLDEENIKVTMDDFLCALQEVKAAFGAATDNLERCRLNGMVDCGERHKHIFERVMLLVEQVKWSKGSPLMTCLLEGPSGSGKTSMAATVGIDSNFPFVKVVSAESMIGLSESSKCAVIVKVFEDAYKSPLSIIILDDIERLLEFVVIGPRFSNLISQTLLVLLKKIPPKGRNLLVIGTTSEVNVLESLGIRKAFGISFHVPTLGRADTKKVLQRLSMFAKDDLDAAVEAIDEIPIKKLFMLVEMVAQGEKGNSAEAIYSGKEKININHFFDCLRYLTGNDDLD*

Protein Length: 754

Fln nts: ATGGGCGGAGCATATTAAATGCCAGTTTTGTTTCACCGGCATACATGGGAAGTTTAATATGATTCCTTTGGTATATTTCGATTTCCATCCTGCTTTTAATTTTTCACTTTTACCTTTTTTCACAGACGACTCTGACGGGCGGAGGAACTCATTCTTCCCCCATTCGCAGCAGACCTCCTGGATGCCCGTTGCGAAAGCTTAAATCTCCGACTTAAGCTGCATCGCGAACCTATCCTCAGTTTCAGTTAAACCCTAGACAACCATTGCGGAAACCGCAGATCTTTTATACTTGAAAAAAATTGGACCTTACAGGATCCGATCGCC_-_ATGCGCGGAGCACCAGCCATGCCCGGAGCATCAACCAGGGAAAATAGCAGAAAAATGTTCGTGACCAACACTCCAGGAGCTGATTTGGCACTGACAAACTGTGCATATTGTTCTTCTTCTGATCTGCGAACCTTCATGGTTCCAGGATTCGGTCAGGCCTTGGCATCCATTGGATCTTCTATGGTTCTTACATTGCGTTTGCATGAAAGCATACAGGATGATTATATTGCTTTGAATGCTATTCAGCGGCGCCATGCTAGGCTTTCTACGGGGGATACTGTTTTAGTCAGTAGGTTTGTTCCACCGGAAAAAAAATTCAAGCTGGTCTTGTTAAGACTTGAACTGGAGTTTGTCAAAGCTAAGGGCAAAACTGAACAGCTTGATGCTGTCCTTCTTGGCAAGGAGCTTCAAAAAAGATTCTCGGATCAGGTTTTCTCTATGGGGCAGAGAGCTACATTTGAATACTGTGGAACAAATTACATCTTCACTGTGAATCAGACTATTGTGGAAGGACAAGGAGATAATGAAAATATAGAGAGAGGAATGCTGTCAAAAGAAACATATATTATCTTTGAGTCAGCCTCAAATTCTGGCATAAAGATAAAGAATCAACGTGAAGCGGCAAGCAGCAACATTTTCAAGCAGAAGGATTTCGACCTTCAAAAATTGGGCATCGGTGGTCTTGCTGAACAATTCCAGGACATATTTCGCAGAGCATTTGCATCTCGGGTTCTTCCTCCACATGTCACAAACAAGTTGGGTATCAAGCATGTTAAAGGAATGCTGCTTCATGGACCCCCTGGAACAGGGAAGACCCTTATTGCCCGTCAAATTGGAAAGATGCTCAATGGGAAAGAACCAAAGATTGTTAATGGACCTGAAGTCTTAAGCAAATATGTGGGAGAAACAGAAAAAAATGTTCGGGATCTTTTTGCTGATGCGGAGAATGATCAAAGGACTCATGGTGACCAAAGTGAATTGCATGTTATTATTTTCGATGAAATTGATGCTATTTGCAAGACTAGAGGATCGACCAGGGATGGAACTGGAGTACATGATGGGATTGTCAATCAACTCCTAACAAAGATAGATGGTGTCGAGTCTTTAAACAATGTGTTGCTTATAGGAATGACAAACAGGAAGGACCTTATTGATGAGGCTCTCCTCAGGCCAGGGCGTTTGGAAATTCAAATAGAGATTGGCCTTCCTGATGAAAAAGGGCGTCTAGAGATTTTTCGAATACACACTAGCAAAATGAAAGAAAATTCTTTTCTTGCTGCTGACGTGAACCTTGAAGAACTCGCTGCACGGACAAAAAATTTCAGTGGAGCTGAAATTGAAGGTGTAGTGAAAAGTGCAGTCTCTTTTGCCTTGAACAGGCAAATCAACCATGATGATCTTACTAAACCTTTAGATGAAGAGAATATAAAGGTCACCATGGATGATTTCTTATGTGCACTTCAAGAAGTAAAAGCGGCGTTTGGAGCAGCCACAGACAATCTCGAGAGATGCAGATTGAATGGTATGGTTGATTGTGGTGAGAGGCACAAACATATATTTGAGAGAGTAATGTTATTAGTAGAGCAAGTGAAATGGAGCAAAGGAAGTCCTCTCATGACTTGTCTTCTTGAAGGGCCTTCGGGCAGTGGTAAAACATCCATGGCAGCAACAGTTGGCATTGACAGCAACTTTCCATTTGTTAAAGTAGTATCTGCTGAATCAATGATTGGACTGAGTGAGAGCAGCAAATGTGCAGTTATAGTCAAGGTTTTTGAGGATGCATACAAGTCTCCATTGAGTATTATCATTCTTGATGATATTGAACGATTATTGGAGTTTGTGGTGATTGGGCCCCGTTTTTCAAACTTGATCTCACAGACATTGTTGGTGCTTCTCAAGAAAATCCCCCCTAAGGGAAGGAATCTGTTGGTTATTGGGACTACAAGTGAAGTAAATGTCCTTGAGTCTTTGGGTATTCGCAAGGCTTTTGGTATTTCATTTCATGTGCCAACATTGGGGCGTGCAGACACAAAGAAGGTTTTACAACGGCTATCTATGTTTGCAAAAGATGACCTTGATGCAGCAGTGGAAGCTATTGATGAGATACCAATCAAGAAGTTGTTTATGTTAGTGGAGATGGTGGCACAAGGCGAGAAAGGGAACAGTGCGGAAGCCATCTACTCTGGAAAGGAGAAAATAAACATTAATCATTTCTTTGATTGCCTTCGTTATCTTACTGGGAATGATGATTTAGATTAG___TTCAAGCTATATCCCGGATTTTCTATTGCTCTCTCTTTTCCAAAACTAGCATCTCAGGAGTTGAAACACATTTGTTGGTTTCTATACCCAATGTTCTGTAGAATGCAGTTCAACTTTGTTAACGCATTTCTATGAGCTGCAGGAAGCCTTGTTGTTTGATTATATGAACTGCTGTCTTTTTGATGTGTTCCTGCAGTCTGTTTTGACAGATTGCGACATGCTTTGTCTGTTTACCAAAAAGTTATTCATTTTTATTAATTCTCCAAAACGATTTTGCTATTAGAGAAGCCATCTTGTTAATAGAATCAGAATGTAAATGATAAAAGTTACAAGAC

Fln Alignment:

Contig6841___IGGLAEQFQDIFRRAFASRVLPPHVTNKLGIKHVKGMLLHGPPGTGKTLIARQIGKMLNGKEPKIVNGPEVLSKYVGETEKNVRDLFADAENDQRTHGDQSELHVIIFDEIDAICKTRGSTRDGTGVHDGIVN----QLLTKIDGVESLNNVLLIGMTNRKDLIDEALLRPGRLEIQIEIGLPDEKGRLEIFRIHTSKMKENSFLAADVNLEELAARTKNFSGAEIEGVVKSAVSFALNRQINHDDLTKPLDEENIKVTMDDFLCALQEV
B8LQW3______________IGGLDQQIKEI-KEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGSRMVRELFVMA----REHAPS----IIFMDEIDSIGSAR--MESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMN----LMRGIDLKKIAEKMSGASGAELKAVCTEAGMFALR-------------ERRVHVTQEDFEMAVAKV

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
245	66			33	1.0
476		11	88		0.923564
524		21		78	1.0
525		21		78	1.0
539		78	21		1.0
541	21		78		1.0
546	81		18		1.0
549	80			20	1.0
550	20			80	1.0
587	14	85			0.999981
608		20		80	0.999996
609		20		80	0.999996
617	88			11	0.923564
655	40		60		1.0
660		50	50		1.0
667	50			50	1.0
712		60		40	1.0
715		40		60	1.0
716		40	60		1.0
719		40	60		1.0
728		60	40		1.0
731	40	60			1.0
761	50			50	1.0
841	50		50		1.0
847		25		75	0.996473
849	75			25	0.996473
862			33	66	1.0
895	33	66			0.997452
902			33	66	1.0
903	25	75			0.996473
906		75		25	0.996473
930	60			40	1.0
979		80		20	0.995493
1058		83		16	0.999991
1064		83	16		0.999991
1084	14		78		0.999974
1692		20		80	0.995493
1705	60		40		1.0
1729			50	50	1.0
1759	14	85			0.993533
1798	25		75		1.0
1804	75		25		1.0
1810	87		12		0.992554
1864		75		25	1.0
1879		75		25	1.0
1884	87			12	0.992554
1893		87		12	0.992554
2768		53		46	1.0
2782	46	53			1.0
2783	50			50	1.0
2799	11		85	3	1.0
2813	26		73		1.0
2817	46		33		1.0
2818	30	69			1.0
2820	66	33			1.0
2830		37		62	1.0
2847	50	50			1.0
2849	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain